mRNA_M-pyrifera_M_contig6857.16492.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6857.16492.1
Unique NamemRNA_M-pyrifera_M_contig6857.16492.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6857.16492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6857contigM-pyrifera_M_contig6857:5589..6425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size837
Cds size564
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6857.16492.1prot_M-pyrifera_M_contig6857.16492.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6857 5657..6220 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816577.653945-UTR-M-pyrifera_M_contig6857:5588..56561622816577.653945-UTR-M-pyrifera_M_contig6857:5588..5656Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6857 5589..5656 +
1692278057.2999935-UTR-M-pyrifera_M_contig6857:5588..56561692278057.2999935-UTR-M-pyrifera_M_contig6857:5588..5656Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6857 5589..5656 +
1622816577.6900897-UTR-M-pyrifera_M_contig6857:6220..64251622816577.6900897-UTR-M-pyrifera_M_contig6857:6220..6425Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6857 6221..6425 +
1692278057.3167841-UTR-M-pyrifera_M_contig6857:6220..64251692278057.3167841-UTR-M-pyrifera_M_contig6857:6220..6425Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6857 6221..6425 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816577.671253-CDS-M-pyrifera_M_contig6857:5656..62201622816577.671253-CDS-M-pyrifera_M_contig6857:5656..6220Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6857 5657..6220 +
1692278057.3085299-CDS-M-pyrifera_M_contig6857:5656..62201692278057.3085299-CDS-M-pyrifera_M_contig6857:5656..6220Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6857 5657..6220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6857.16492.1

>prot_M-pyrifera_M_contig6857.16492.1 ID=prot_M-pyrifera_M_contig6857.16492.1|Name=mRNA_M-pyrifera_M_contig6857.16492.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=188bp
MLCYAARWPRKGGRAQLIWKTKGLFLGRSWIYVGIRHSKACRRLSLKNNS
FFQGQDIKTQTTGETWRAVREEATKVAAYLQVKIHSTLLRQKKKTVQNAV
HKKQCVPCRKDPLVRVVKRLTSIIRWLVPRRPAQQVACSKGKQSRFVFRL
LRSHLSPAQASRNGAQKYGRTLHKTERQTRDIQKIRR*
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mRNA from alignment at M-pyrifera_M_contig6857:5589..6425+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6857.16492.1 ID=mRNA_M-pyrifera_M_contig6857.16492.1|Name=mRNA_M-pyrifera_M_contig6857.16492.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=837bp|location=Sequence derived from alignment at M-pyrifera_M_contig6857:5589..6425+ (Macrocystis pyrifera P11B4 male)
TGTTTTGTTGTGCTTATTTATTGATTGTTGGTATGCCAGACCCCAGCAGT
CTACGTATGCCATGCTAAATGCTATGCTATGCTGCGCGGTGGCCGAGGAA
GGGGGGTCGCGCTCAACTCATATGGAAGACGAAGGGGCTATTTCTGGGGC
GCTCATGGATATATGTAGGAATCCGGCATTCAAAAGCATGCCGCCGGCTG
TCACTCAAAAATAATTCATTCTTCCAAGGTCAGGACATCAAAACACAAAC
GACCGGCGAAACATGGCGCGCCGTCAGAGAAGAGGCAACGAAAGTCGCGG
CGTACTTGCAGGTAAAAATACATTCGACACTTTTGAGACAAAAAAAAAAA
ACTGTCCAAAACGCTGTTCATAAAAAACAGTGTGTCCCGTGTCGAAAAGA
CCCCCTCGTTCGGGTTGTGAAGCGATTGACGAGTATAATCCGATGGCTTG
TGCCGCGGCGCCCTGCTCAACAAGTTGCCTGCTCAAAGGGGAAGCAGTCC
CGGTTTGTCTTTCGGCTTCTTCGCTCACACCTTTCGCCCGCACAGGCGTC
AAGAAACGGCGCACAGAAATATGGCAGGACCCTTCATAAAACAGAGAGAC
AAACGAGAGACATACAGAAAATCCGACGATAAAGGTTTTCGTCCGAGCAC
GTAGCCACAGGAAGAGCGCAAACTCTCACAAGGAACCCCTCCCCCCTACG
TACGCAACCGGCCCAACTAAAAATAAAAACTACCCTCCGCTCACTGCCCG
TGCACTGCCCGTATCTCTCATGCCCGCTCGGGGCGATCGCCAGATTCCCG
CAGCAGTTACAAAAAAAAAAAAACTATTTGCCCTTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6857:5589..6425+

>mRNA_M-pyrifera_M_contig6857.16492.1 ID=mRNA_M-pyrifera_M_contig6857.16492.1|Name=mRNA_M-pyrifera_M_contig6857.16492.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1128bp|location=Sequence derived from alignment at M-pyrifera_M_contig6857:5589..6425+ (Macrocystis pyrifera P11B4 male)
ATGCTATGCTATGCTGCGCGGTGGCCGAGGAAGGGGGGTCGCGCTCAACT
CATATGGAAGACGAAGGGGCTATTTCTGGGGCGCTCATGGATATATGTAG
GAATCCGGCATTCAAAAGCATGCCGCCGGCTGTCACTCAAAAATAATTCA
TTCTTCCAAGGTCAGGACATCAAAACACAAACGACCGGCGAAACATGGCG
CGCCGTCAGAGAAGAGGCAACGAAAGTCGCGGCGTACTTGCAGGTAAAAA
TACATTCGACACTTTTGAGACAAAAAAAAAAAACTGTCCAAAACGCTGTT
CATAAAAAACAGTGTGTCCCGTGTCGAAAAGACCCCCTCGTTCGGGTTGT
GAAGCGATTGACGAGTATAATCCGATGGCTTGTGCCGCGGCGCCCTGCTC
AACAAGTTGCCTGCTCAAAGGGGAAGCAGTCCCGGTTTGTCTTTCGGCTT
CTTCGCTCACACCTTTCGCCCGCACAGGCGTCAAGAAACGGCGCACAGAA
ATATGGCAGGACCCTTCATAAAACAGAGAGACAAACGAGAGACATACAGA
AAATCCGACGATAAATGCTATGCTATGCTGCGCGGTGGCCGAGGAAGGGG
GGTCGCGCTCAACTCATATGGAAGACGAAGGGGCTATTTCTGGGGCGCTC
ATGGATATATGTAGGAATCCGGCATTCAAAAGCATGCCGCCGGCTGTCAC
TCAAAAATAATTCATTCTTCCAAGGTCAGGACATCAAAACACAAACGACC
GGCGAAACATGGCGCGCCGTCAGAGAAGAGGCAACGAAAGTCGCGGCGTA
CTTGCAGGTAAAAATACATTCGACACTTTTGAGACAAAAAAAAAAAACTG
TCCAAAACGCTGTTCATAAAAAACAGTGTGTCCCGTGTCGAAAAGACCCC
CTCGTTCGGGTTGTGAAGCGATTGACGAGTATAATCCGATGGCTTGTGCC
GCGGCGCCCTGCTCAACAAGTTGCCTGCTCAAAGGGGAAGCAGTCCCGGT
TTGTCTTTCGGCTTCTTCGCTCACACCTTTCGCCCGCACAGGCGTCAAGA
AACGGCGCACAGAAATATGGCAGGACCCTTCATAAAACAGAGAGACAAAC
GAGAGACATACAGAAAATCCGACGATAA
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