mRNA_M-pyrifera_M_contig68532.16490.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68532.16490.1
Unique NamemRNA_M-pyrifera_M_contig68532.16490.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig68532.16490.1 vs. uniprot
Match: A0A6V3DVU9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V3DVU9_HETAK)

HSP 1 Score: 115 bits (287), Expect = 1.590e-30
Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 1
Query:   25 PAHQNKYAFRHNPNSVKTRRILAIPNTGVCRRCKEIIEWKKKYRKYKPLSQPRKCDSCGEKKIVLAYHVLCKQCGPVRK 261
            P HQN++AF+HNPNS KTR+ILA+PN G+CRRC E IEW+KKYRKYKPL+QP  C  C +K +  AYH  CK C   R+
Sbjct:   15 PKHQNEFAFKHNPNSKKTRKILAMPNVGLCRRCSEKIEWRKKYRKYKPLTQPAVCRFCKQKTVTSAYHSACKPCAKQRR 93          
BLAST of mRNA_M-pyrifera_M_contig68532.16490.1 vs. uniprot
Match: A0A7S2BQ45_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BQ45_9STRA)

HSP 1 Score: 113 bits (283), Expect = 4.620e-30
Identity = 50/83 (60.24%), Postives = 63/83 (75.90%), Query Frame = 1
Query:    1 EIQKMPRRPAHQNKYAFRHNPNSVKTRRILAIPNTGVCRRCKEIIEWKKKYRKYKPLSQPRKCDSCGEKKIVLAYHVLCKQCG 249
            + +K  R+PAHQN++AF HN NS  T++ILA+PN G+CRRC + IEW+KKYRKYKPL QPRKC+ C  K +  AYHV CK C 
Sbjct:    5 QSKKKGRKPAHQNEFAFVHNANSRLTKKILAMPNEGLCRRCHDKIEWRKKYRKYKPLKQPRKCNFCHNKAVKAAYHVACKPCA 87          
BLAST of mRNA_M-pyrifera_M_contig68532.16490.1 vs. uniprot
Match: D2UXH9_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2UXH9_NAEGR)

HSP 1 Score: 111 bits (277), Expect = 3.730e-29
Identity = 47/81 (58.02%), Postives = 61/81 (75.31%), Query Frame = 1
Query:   22 RPAHQNKYAFRHNPNSVKTRRILAIPNTGVCRRCKEIIEWKKKYRKYKPLSQPRKCDSCGEKKIVLAYHVLCKQCGPVRKR 264
            +P HQN YAF+HN  S  T +IL+ PN G+C+RC +IIEWKK YRKYKPL+QPR+C+ C +K I LAYHV+C  C   +K+
Sbjct:   10 KPRHQNDYAFKHNKASKLTAKILSTPNVGLCKRCHDIIEWKKAYRKYKPLTQPRRCNVCQQKTITLAYHVICDACAKKQKK 90          
BLAST of mRNA_M-pyrifera_M_contig68532.16490.1 vs. uniprot
Match: A0A6A5BUN5_NAEFO (Uncharacterized protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BUN5_NAEFO)

HSP 1 Score: 110 bits (274), Expect = 1.710e-28
Identity = 45/81 (55.56%), Postives = 62/81 (76.54%), Query Frame = 1
Query:   22 RPAHQNKYAFRHNPNSVKTRRILAIPNTGVCRRCKEIIEWKKKYRKYKPLSQPRKCDSCGEKKIVLAYHVLCKQCGPVRKR 264
            +P +QN+YAF+HN  S  T +IL+ PN G+CRRC +IIEWKK YRKYKPL+QPR+C+ C +K + LAYHV+C +C    ++
Sbjct:   10 KPRYQNEYAFKHNKASKLTSKILSTPNVGLCRRCHDIIEWKKAYRKYKPLTQPRRCNICQQKTVTLAYHVICNKCAKENRK 90          
BLAST of mRNA_M-pyrifera_M_contig68532.16490.1 vs. uniprot
Match: A0A7S2FXE3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FXE3_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.760e-28
Identity = 45/75 (60.00%), Postives = 57/75 (76.00%), Query Frame = 1
Query:   25 PAHQNKYAFRHNPNSVKTRRILAIPNTGVCRRCKEIIEWKKKYRKYKPLSQPRKCDSCGEKKIVLAYHVLCKQCG 249
            P+HQN +AF+HNPNS  T++ILA+PN G+CRRC E IEW+KKYRKYKPL  P  C+ C +K +  AYHV C+ C 
Sbjct:   25 PSHQNGFAFQHNPNSKLTKKILAMPNEGLCRRCTEKIEWRKKYRKYKPLRVPGSCNYCRKKAVTAAYHVACRPCA 99          
BLAST of mRNA_M-pyrifera_M_contig68532.16490.1 vs. uniprot
Match: K0SDJ3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SDJ3_THAOC)

HSP 1 Score: 112 bits (280), Expect = 1.930e-28
Identity = 49/81 (60.49%), Postives = 59/81 (72.84%), Query Frame = 1
Query:   19 RRPAHQNKYAFRHNPNSVKTRRILAIPNTGVCRRCKEIIEWKKKYRKYKPLSQPRKCDSCGEKKIVLAYHVLCKQCGPVRK 261
            R P HQN +AFRHNP S KT +ILA PN GVC RC + IEW+KKYRKYKP +QP KC+ CG+K I+ AYH +C +C    K
Sbjct:   14 RAPKHQNSFAFRHNPKSKKTDKILASPNVGVCGRCHDKIEWRKKYRKYKPRTQPGKCNVCGQKNIMAAYHTICTKCAGSEK 94          
BLAST of mRNA_M-pyrifera_M_contig68532.16490.1 vs. uniprot
Match: A0A6T6VFD4_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A6T6VFD4_9STRA)

HSP 1 Score: 106 bits (264), Expect = 5.230e-27
Identity = 45/78 (57.69%), Postives = 55/78 (70.51%), Query Frame = 1
Query:   25 PAHQNKYAFRHNPNSVKTRRILAIPNTGVCRRCKEIIEWKKKYRKYKPLSQPRKCDSCGEKKIVLAYHVLCKQCGPVR 258
            P H+N +AF+HN NS KT++IL I + G+C RC EIIEWKKKYRKYKPL  P+KC+ C  + I  AYH LC  C   R
Sbjct:   13 PKHKNSFAFKHNKNSKKTKKILGIDHHGLCSRCSEIIEWKKKYRKYKPLKAPKKCNGCDRRSIAKAYHTLCDDCARSR 90          
BLAST of mRNA_M-pyrifera_M_contig68532.16490.1 vs. uniprot
Match: A0A0H5R2V5_9EUKA (Uncharacterized protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R2V5_9EUKA)

HSP 1 Score: 107 bits (267), Expect = 5.750e-27
Identity = 43/75 (57.33%), Postives = 57/75 (76.00%), Query Frame = 1
Query:   25 PAHQNKYAFRHNPNSVKTRRILAIPNTGVCRRCKEIIEWKKKYRKYKPLSQPRKCDSCGEKKIVLAYHVLCKQCG 249
            PAH NK+AF+HNP+S  T+ I AIP   VC RC +I+EW+K +RKYKPL +PRKCD C  + I+ +YHV+C+QC 
Sbjct:   21 PAHLNKFAFKHNPHSAVTKAIAAIPQRRVCSRCYDILEWRKSFRKYKPLKKPRKCDQCNNQTIITSYHVICEQCS 95          
BLAST of mRNA_M-pyrifera_M_contig68532.16490.1 vs. uniprot
Match: A0A7S4VSA8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VSA8_9STRA)

HSP 1 Score: 105 bits (263), Expect = 6.850e-27
Identity = 43/74 (58.11%), Postives = 55/74 (74.32%), Query Frame = 1
Query:   25 PAHQNKYAFRHNPNSVKTRRILAIPNTGVCRRCKEIIEWKKKYRKYKPLSQPRKCDSCGEKKIVLAYHVLCKQC 246
            PAHQNKYAF+HNP S  T +IL+ PN GVC++C + IEW+KKYRKYKPL QP  C+ C ++ +  AYH +C  C
Sbjct:   17 PAHQNKYAFKHNPKSKLTEKILSSPNEGVCKKCHDKIEWRKKYRKYKPLKQPSTCNVCRKRNVKAAYHTICNDC 90          
BLAST of mRNA_M-pyrifera_M_contig68532.16490.1 vs. uniprot
Match: D8M6Q4_BLAHO (Uncharacterized protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M6Q4_BLAHO)

HSP 1 Score: 103 bits (258), Expect = 9.650e-27
Identity = 45/77 (58.44%), Postives = 56/77 (72.73%), Query Frame = 1
Query:   19 RRPAHQNKYAFRHNPNSVKTRRILAIPNTGVCRRCKEIIEWKKKYRKYKPLSQPRKCDSCGEKKIVLAYHVLCKQCG 249
            R PAHQNK++FRHN NS KT +I A+P   VC RC++ IEWKKKYRKYKPL+ P KC  CG + +  AYH +C +C 
Sbjct:   11 RTPAHQNKFSFRHNKNSKKTEKIAAMPIYLVCERCRKKIEWKKKYRKYKPLTAPGKCVKCGNRNVKAAYHQICDECA 87          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68532.16490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V3DVU9_HETAK1.590e-3062.03Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2BQ45_9STRA4.620e-3060.24Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
D2UXH9_NAEGR3.730e-2958.02Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
A0A6A5BUN5_NAEFO1.710e-2855.56Uncharacterized protein n=2 Tax=Naegleria TaxID=57... [more]
A0A7S2FXE3_9STRA1.760e-2860.00Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
K0SDJ3_THAOC1.930e-2860.49Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A6T6VFD4_9STRA5.230e-2757.69Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A0H5R2V5_9EUKA5.750e-2757.33Uncharacterized protein n=1 Tax=Spongospora subter... [more]
A0A7S4VSA8_9STRA6.850e-2758.11Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
D8M6Q4_BLAHO9.650e-2758.44Uncharacterized protein n=1 Tax=Blastocystis homin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68532contigM-pyrifera_M_contig68532:710..973 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.9
Seed ortholog evalue2.9e-22
Seed eggNOG ortholog159749.K0SDJ3
Preferred nameC9orf85
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Uncharacterized conserved protein (DUF2039)
EggNOG OGs2XDRH@2836,KOG3241@1,KOG3241@2759
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size264
Cds size252
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816577.5108953-UTR-M-pyrifera_M_contig68532:709..7211622816577.5108953-UTR-M-pyrifera_M_contig68532:709..721Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig68532 710..721 +
1692278057.2446296-UTR-M-pyrifera_M_contig68532:709..7211692278057.2446296-UTR-M-pyrifera_M_contig68532:709..721Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig68532 710..721 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816577.5241559-CDS-M-pyrifera_M_contig68532:721..9731622816577.5241559-CDS-M-pyrifera_M_contig68532:721..973Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68532 722..973 +
1692278057.262437-CDS-M-pyrifera_M_contig68532:721..9731692278057.262437-CDS-M-pyrifera_M_contig68532:721..973Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68532 722..973 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68532.16490.1prot_M-pyrifera_M_contig68532.16490.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68532 722..973 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68532.16490.1

>prot_M-pyrifera_M_contig68532.16490.1 ID=prot_M-pyrifera_M_contig68532.16490.1|Name=mRNA_M-pyrifera_M_contig68532.16490.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
MPRRPAHQNKYAFRHNPNSVKTRRILAIPNTGVCRRCKEIIEWKKKYRKY
KPLSQPRKCDSCGEKKIVLAYHVLCKQCGPVRKR
back to top

mRNA from alignment at M-pyrifera_M_contig68532:710..973+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68532.16490.1 ID=mRNA_M-pyrifera_M_contig68532.16490.1|Name=mRNA_M-pyrifera_M_contig68532.16490.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig68532:710..973+ (Macrocystis pyrifera P11B4 male)
GAAATTCAGAAAATGCCTCGGAGACCTGCGCATCAGAATAAGTATGCGTT CCGTCACAACCCTAACAGTGTGAAAACGCGCCGCATCCTTGCGATCCCCA ACACTGGCGTGTGTAGGCGCTGCAAGGAGATCATTGAGTGGAAGAAAAAG TACCGAAAGTACAAACCTCTCTCCCAGCCGCGCAAGTGCGACTCTTGTGG GGAGAAAAAGATTGTACTCGCGTACCATGTGCTGTGCAAGCAGTGTGGAC CGGTAAGGAAGCGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig68532:710..973+

>mRNA_M-pyrifera_M_contig68532.16490.1 ID=mRNA_M-pyrifera_M_contig68532.16490.1|Name=mRNA_M-pyrifera_M_contig68532.16490.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig68532:710..973+ (Macrocystis pyrifera P11B4 male)
ATGCCTCGGAGACCTGCGCATCAGAATAAGTATGCGTTCCGTCACAACCC
TAACAGTGTGAAAACGCGCCGCATCCTTGCGATCCCCAACACTGGCGTGT
GTAGGCGCTGCAAGGAGATCATTGAGTGGAAGAAAAAGTACCGAAAGTAC
AAACCTCTCTCCCAGCCGCGCAAGTGCGACTCTTGTGGGGAGAAAAAGAT
TGTACTCGCGTACCATGTGCTGTGCAAGCAGTGTGGACCGGTAAGGAAGC
GAATGCCTCGGAGACCTGCGCATCAGAATAAGTATGCGTTCCGTCACAAC
CCTAACAGTGTGAAAACGCGCCGCATCCTTGCGATCCCCAACACTGGCGT
GTGTAGGCGCTGCAAGGAGATCATTGAGTGGAAGAAAAAGTACCGAAAGT
ACAAACCTCTCTCCCAGCCGCGCAAGTGCGACTCTTGTGGGGAGAAAAAG
ATTGTACTCGCGTACCATGTGCTGTGCAAGCAGTGTGGACCGGTAAGGAA
GCGA
back to top