mRNA_M-pyrifera_M_contig68531.16489.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68531.16489.1
Unique NamemRNA_M-pyrifera_M_contig68531.16489.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig68531.16489.1 vs. uniprot
Match: A0A812Z575_9DINO (EOGT protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812Z575_9DINO)

HSP 1 Score: 192 bits (487), Expect = 9.910e-54
Identity = 103/207 (49.76%), Postives = 131/207 (63.29%), Query Frame = 1
Query:   13 HTVFAAPGYSNFLLAHLDGPSTCARKSRLLRAFREFFLGGMGVPTPAARS------NER-------LRVVVVSRRPYDKFVGHAFVGRQVDNEQELMEAFQASGGADAFLAAGADVKLVDLVHLDFAEQLELIASTDILVGMHGAALSYAAFLPPWAGVLELWPKTTKMWRCFEHLAHLSGVAYQRWANPDKS-RYREDKQGDYTTL 591
            H V++ PGY++F  + L   + C   + L+RAFR F L GMGV     RS      N+R       + V  +SRRPY+K V HAFVGRQVDNE EL+ A   +G    F  A   V+LVD+VHL   EQ+ LIA +D+LVGMHGAALS+   +PPW GV ELWPK T MWRCFEH+A  +G+AY R A    + ++R DK GDYTT+
Sbjct:  426 HVVYSPPGYTSFFFSTLTQDAHCTAATHLMRAFRRFLLSGMGVRHMLPRSALAVPANQRGAPVGDVITVTFISRRPYNKHVSHAFVGRQVDNEAELVGAMLETG---RFRKATLHVQLVDMVHLSSEEQVRLIARSDVLVGMHGAALSHMLAMPPWGGVFELWPKPTDMWRCFEHMARWAGLAYGRLAASGTAPQFRTDKNGDYTTV 629          
BLAST of mRNA_M-pyrifera_M_contig68531.16489.1 vs. uniprot
Match: A0A5J4Y8B4_9CHLO (EGF-domain O-c isoform A n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y8B4_9CHLO)

HSP 1 Score: 149 bits (376), Expect = 1.380e-41
Identity = 83/214 (38.79%), Postives = 128/214 (59.81%), Query Frame = 1
Query:   10 EHTVFAAPGYSNFLLAHLDGPSTCARKSRLLRAFREFFLGGMGVPTPA-ARSNERLRVVVVSRRPYDKFVGHAFVGRQVDNEQELMEAFQASGGADAFLAAGADVKLVDLVHLDFAEQLELIAS-TDILVGMHGAALSYAAFLPPWAGVLELWPKTTKMWRCFEHLAHLSGVAYQRWANPDKSRYREDKQGDYTTLDVPAVVELAKTLAKAVRE 645
            +  +F  PGY++ L AH    ++C   + L + FRE+FLG + +P+   +R+ + +RVV++SR+PY K      V RQ+ NE EL    +   G  A        +L+DL  +  AEQ++L++S T+ILVGMHGAAL+++  +PP   +LELWP+   MWR +EH A  +G+ Y+RW + DK  +   +    T++DV AV  L KTL  AV +
Sbjct:    3 QQAIFVPPGYTSLLYAHGHEDNSCPYNTALFKGFREWFLGTLSLPSQGPSRAGQPVRVVLISRKPYGK---KKRVARQIRNELELFAMVEQMQGVQA--------RLIDLARISLAEQIQLVSSDTNILVGMHGAALAWSLMMPPGTALLELWPQPN-MWRLYEHTAQWAGLHYRRWVSQDKMPHSVSEPP--TSVDVQAVAALLKTLVVAVHK 202          
BLAST of mRNA_M-pyrifera_M_contig68531.16489.1 vs. uniprot
Match: A0A6A5C5A0_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5C5A0_NAEFO)

HSP 1 Score: 142 bits (357), Expect = 1.070e-35
Identity = 81/226 (35.84%), Postives = 133/226 (58.85%), Query Frame = 1
Query:   10 EHTVFAAPGYSNFLLAHLD-----GPSTCARKSRLLRAFREFFLGGMGVPTPAAR-SNERLRVVVVSRRPYDKF-VGHAFVGRQVDNEQELMEAFQASGGADAFLAAGADVKLVDLVHLDFAEQLELIASTDILVGMHGAALSYAAFLPPW-AGVLELWP-KTTKMWRCFEHLAHLSGVAYQRWANPDKSRYREDKQGDYTTLDVPAVVELAKTLAKAVREERRNL 660
            E  +F   GY++ LL+HL       P+ C+++ + L A+ E  + G  +PT +++ S+E +RV++VSRRPY+K  V H+++GRQ+ NE +L++A +        +     V+ VD   L F EQ++    +D L+GMHGA L++A +LPP  + VLELW  K  + W+CFE +    G  Y+ W N +   + +D +GDYT +DV   +   + + K +R  R+NL
Sbjct:  349 EKAIFQPAGYASPLLSHLTDFSKGNPNQCSQRLKTLTAYTERIIEGFNIPTRSSQPSSEIIRVLLVSRRPYNKNGVEHSYMGRQIANEDDLLKALKKYELDHKTIV----VERVDFAQLSFKEQIQKTYHSDFLIGMHGAGLTHAFWLPPSRSAVLELWSLKEVQNWQCFEQITLWKGNLYEIWKNSNPKNHWKDSKGDYTIVDVDEFMTTFERMLKDLRAMRKNL 570          
BLAST of mRNA_M-pyrifera_M_contig68531.16489.1 vs. uniprot
Match: UPI001CFF0EC2 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFF0EC2)

HSP 1 Score: 138 bits (348), Expect = 2.190e-34
Identity = 79/226 (34.96%), Postives = 132/226 (58.41%), Query Frame = 1
Query:   10 EHTVFAAPGYSNFLLAHLD-----GPSTCARKSRLLRAFREFFLGGMGVPTPAAR-SNERLRVVVVSRRPYDKF-VGHAFVGRQVDNEQELMEAFQASGGADAFLAAGADVKLVDLVHLDFAEQLELIASTDILVGMHGAALSYAAFLPP-WAGVLELWP-KTTKMWRCFEHLAHLSGVAYQRWANPDKSRYREDKQGDYTTLDVPAVVELAKTLAKAVREERRNL 660
            E  +F   GY++ LL+HL        + C+++ + L A+ E  L G  +P  +++ S++ +RV+ VSRRPY+K  V H+++GRQ+ NE +L++A +        +     V+ VD   L F EQ++    +D L+GMHGA L++A +LPP  + VLELW  K  + W+CFE +    G  Y+ W N +   + +D +GDYT +DV   +++ + + K +R  R+NL
Sbjct:  361 EKAIFQPAGYASPLLSHLTDFSKANSNQCSQRLKTLTAYTERILTGFNIPPRSSQPSSDIIRVLFVSRRPYNKHGVEHSYMGRQIANEDDLLKALKKYELEHKNIV----VERVDFAQLTFKEQIQKTYHSDFLIGMHGAGLTHAFWLPPSQSAVLELWSIKEVQNWQCFEQITLWKGNLYEIWKNSNPKNHWKDSKGDYTIIDVDEFMKMFERMLKDLRAMRKNL 582          
BLAST of mRNA_M-pyrifera_M_contig68531.16489.1 vs. uniprot
Match: A0A0G4IU64_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IU64_PLABS)

HSP 1 Score: 136 bits (343), Expect = 4.520e-34
Identity = 80/219 (36.53%), Postives = 118/219 (53.88%), Query Frame = 1
Query:    1 LLSEHTVFAAPGYSNFLLAHLDGPSTCARKSR----LLRAFREFFLGGMGVPTPAARSNERLRVVVVSRRPYDKFVGHAFVGRQVDNEQELMEAFQASGGADAFLAAGADVKLVDLVHLDFAEQLELIASTDILVGMHGAALSYAAFLPPWAGVLELWPKTTKMWRCFEHLAHLSGVAYQRWANPD-KSRYREDKQGDYTTLDVPAVVELAKTLAKAVR 642
            +L ++ VF  PGYS+F   H   P    +       L  AF    L G GV    AR++  +RV++V R+PY     H  +GRQ+DNE  L+ A  +          G  V +VD   LDF EQL  ++++D+++GMHGA L++A +LP    +LE+ PK +  W CF H+A  +G+ Y    N    + YRED  GDYTT+DV  +  + ++L   VR
Sbjct:  281 MLIQNAVFVPPGYSSFFYRHNTDPDDDCQVGTGGVALYDAFSRHILSGFGVTRRQARTSS-VRVLMVVRKPY--LPSHPRMGRQIDNEAALVSALDS--------IPGIVVDVVDFAGLDFEEQLRRVSASDVMIGMHGAGLTHALWLPVGGALLEIRPKPSMGWYCFRHMAKYAGLHYDALVNRHFPAGYREDAHGDYTTVDVAELTSIVESLLSRVR 488          
BLAST of mRNA_M-pyrifera_M_contig68531.16489.1 vs. uniprot
Match: E1ZCP2_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZCP2_CHLVA)

HSP 1 Score: 134 bits (337), Expect = 1.270e-32
Identity = 72/183 (39.34%), Postives = 107/183 (58.47%), Query Frame = 1
Query:  124 LGGMGVPTPAARSNERLRVVVVSRRPYDKFVGHAFVGRQVDNEQELMEAFQASGGADAFLAAGA-DVKLVDLVHLDFAEQLELIASTDILVGMHGAALSYAAFLPPWAGVLELWPKTTKMWRCFEHLAHLSGVAYQRWANPDKSRYREDKQGDYTTLDVPAVVELAKTLAKAVREER-RNLGL 666
            +G +G    A RS+  L + ++SRRP     G A + RQ+ NE+EL+   + +   D      A  V L+D   L   +Q+ ++  TDIL+GMHGAAL+YA  LPP A ++ELWP+   +WRC+++ A  +G  Y+R ANPD SR+R+   GD T +DV  V +  + L   V++ R   LGL
Sbjct:  491 IGSLGAEGDAHRSDSTLTIRLISRRPGP---GKARMARQIGNEEELVAELRVAADEDRGGGGSAVSVGLLDFAQLTVEQQVAVVQQTDILIGMHGAALAYALLLPPHAALVELWPQADGIWRCYQNFAQWAGALYRRVANPDPSRHRDTPAGDVTQVDVGEVAQAVRELLPLVQQRRAERLGL 670          
BLAST of mRNA_M-pyrifera_M_contig68531.16489.1 vs. uniprot
Match: A0A7S2TIA9_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TIA9_9EUKA)

HSP 1 Score: 126 bits (316), Expect = 1.990e-32
Identity = 72/222 (32.43%), Postives = 122/222 (54.95%), Query Frame = 1
Query:    1 LLSEHTVFAAPGYSNFLLAHLDGPSTCARKSRLLRAFREFFLGGMGVPTPAARSNE--RLRVVVVSRRPYD-KFVGHAFVGRQVDNEQELMEAFQASGGADAFLAAGADVKLVDLVHLDFAEQLELIASTDILVGMHGAALSYAAFLPPWAGVLELWPKTTKMWRCFEHLAHLSGVAYQRWANPDKSR-YREDKQGDYTTLDVPAVVELAKTLAKAVREERR 654
            +L++  V++ PGYSN LL      + C +  R++ AF    +  +        S++   L+++ +SRRPY  K V H FVGRQ+DN+ E+++A +              V + D  H++  +Q+   A +D++VGMHGAAL++  +LP W G++E+  K   +   F  +A  +G+ ++ W NP   R YR+D  GDYTT+D+   +   +    AVRE ++
Sbjct:    2 ILAKRAVWSPPGYSNILLG--KNWNDCQKPMRMMEAF----IAAVDDAYEGEHSHDIQNLKIIFISRRPYQTKQVDHKFVGRQIDNQDEVVKAIKE--------IPHVSVTVADFAHMELKDQIHAAAGSDVMVGMHGAALAHCLWLPSWGGLVEMGSKRD-LGVFFLKIARWAGIHFENWINPYYPRHYRQDNTGDYTTVDLKTFLPHVQRAVDAVRERKK 208          
BLAST of mRNA_M-pyrifera_M_contig68531.16489.1 vs. uniprot
Match: A0A0H5RBP8_9EUKA (Uncharacterized protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RBP8_9EUKA)

HSP 1 Score: 119 bits (298), Expect = 1.110e-27
Identity = 70/221 (31.67%), Postives = 118/221 (53.39%), Query Frame = 1
Query:    1 LLSEHTVFAAPGYSNFLLAHLDGPSTCARKSR---LLRAFREFFLGGMGVPTPAARSNERLRVVVVSRRPYDKF-VGHAFVGRQVDNEQELMEAFQASGGADAFLAAGADVKLVDLVHLDFAEQLELIASTDILVGMHGAALSYAAFLPPWAGVLELWPKTTKMWRCFEHLAHLSGVAYQRWANPD-KSRYREDKQGDYTTLDVPAVVELAKT-LAKAVRE 645
            +L EH VF   GYS+ L    +   +C        L+RAF    +    +    AR ++ +R+++V R+PY      H F+GRQ+DNE +++   ++          G ++ +VD   +   +Q++ + S+D+++GMHGA L +A +LP    ++E+ P     WRCF ++A   G+ Y  + N +  S YRED +GDYT +DV  +    KT +AK  R+
Sbjct:  288 VLIEHGVFVPAGYSSILYKSNEHGLSCDPGKDGVGLMRAFARHVVTSFNI---TARRHDHIRILLVLRKPYSSGQFEHKFIGRQIDNEDDVISMIRS--------LPGTELTVVDFAKVPLRDQIDQVHSSDVMIGMHGAGLLHAFWLPLHGALVEIRPTPNMGWRCFRNIAIQVGLIYDEYTNDEFPSNYREDARGDYTIIDVKKLENKLKTVIAKIYRK 497          
BLAST of mRNA_M-pyrifera_M_contig68531.16489.1 vs. uniprot
Match: A0A7S3ZG50_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZG50_9EUKA)

HSP 1 Score: 110 bits (275), Expect = 3.810e-27
Identity = 56/146 (38.36%), Postives = 90/146 (61.64%), Query Frame = 1
Query:  166 ERLRVVVVSRRPYD-KFVGHAFVGRQVDNEQELMEAFQASGGADAFLAAGADVKLVDLVHLDFAEQLELIASTDILVGMHGAALSYAAFLPPWAGVLELWPKTTKMWRCFEHLAHLSGVAYQRWANPDKSR-YREDKQGDYTTLDV 597
            + L+V+ +SRRPY  K V H FVGRQ+DN+ E+++A +A             V++VD  H+   +Q+   A +D++VGMHGAAL++  +LP W G++E+  K   +   F  +A  +G+ ++ W NP   R +R+D  GDYTT+D+
Sbjct:    8 DNLKVIFISRRPYQTKQVDHKFVGRQIDNQDEVVKAIKA--------LPNVSVQVVDFAHMQLKDQIHAAAGSDVMVGMHGAALAHCLWLPSWGGLVEMGSKRD-LGVYFLKIARWAGIHFENWINPYYPRHFRKDNAGDYTTVDL 144          
BLAST of mRNA_M-pyrifera_M_contig68531.16489.1 vs. uniprot
Match: A0A482RN06_9ARCH (Glycosyltransferase family 61 protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RN06_9ARCH)

HSP 1 Score: 111 bits (277), Expect = 4.030e-27
Identity = 61/157 (38.85%), Postives = 79/157 (50.32%), Query Frame = 1
Query:  310 GADVKLVDLVHLDFAEQLELIASTDILV----------------------------------------GMHGAALSYAAFLPPWAGVLELWPKTTKMWRCFEHLAHLSGVAYQRWANPDKSRYREDKQGDYTTLDVPAVVELAKTLAKAVREERRNL 660
            G  ++LVD+  L  AEQ+ LIA T+ILV                                         MHGAALSYA F+     V+ELWP+   +WRCFEHLA  +GV Y+RW N   SRYRED+ GDY T+D  AV ++ + +   VR+ R  L
Sbjct:   10 GVHIELVDMAQLSVAEQMRLIADTEILVRIEHHRARVRACARCKFSSSPVSPCLHGRAPWLLRVFMQIAMHGAALSYAMFMRAHGAVIELWPRPDGLWRCFEHLATHAGVEYERWGNSQPSRYREDRAGDYLTVDGAAVAQVLQRVVAHVRDRRAGL 166          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68531.16489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812Z575_9DINO9.910e-5449.76EOGT protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A5J4Y8B4_9CHLO1.380e-4138.79EGF-domain O-c isoform A n=1 Tax=Trebouxia sp. A1-... [more]
A0A6A5C5A0_NAEFO1.070e-3535.84Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
UPI001CFF0EC22.190e-3434.96uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A0G4IU64_PLABS4.520e-3436.53Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
E1ZCP2_CHLVA1.270e-3239.34Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A7S2TIA9_9EUKA1.990e-3232.43Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A0H5RBP8_9EUKA1.110e-2731.67Uncharacterized protein n=1 Tax=Spongospora subter... [more]
A0A7S3ZG50_9EUKA3.810e-2738.36Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A482RN06_9ARCH4.030e-2738.85Glycosyltransferase family 61 protein n=1 Tax=arch... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68531contigM-pyrifera_M_contig68531:136..807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score146.4
Seed ortholog evalue1.6e-32
Seed eggNOG ortholog554065.XP_005848377.1
KEGG koko:K03714
KEGG ReactionR06016
KEGG Pathwayko00513,ko01100,map00513,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005797,GO:0006464,GO:0006486,GO:0006487,GO:0006605,GO:0006612,GO:0006620,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016740,GO:0016757,GO:0016763,GO:0019538,GO:0031090,GO:0031204,GO:0031984,GO:0031985,GO:0033036,GO:0033365,GO:0034613,GO:0034645,GO:0035252,GO:0036211,GO:0042285,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0050513,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070085,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Beta-1,2-xylosyltransferase
EggNOG OGs37P3Y@33090,KOG4698@1,KOG4698@2759
EC2.4.2.38
COG Functional cat.S
CAZyGT61
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Exons1
Model size672
Cds size672
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816577.4718482-CDS-M-pyrifera_M_contig68531:135..8071622816577.4718482-CDS-M-pyrifera_M_contig68531:135..807Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68531 136..807 +
1692278057.228828-CDS-M-pyrifera_M_contig68531:135..8071692278057.228828-CDS-M-pyrifera_M_contig68531:135..807Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68531 136..807 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68531.16489.1prot_M-pyrifera_M_contig68531.16489.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68531 136..807 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68531.16489.1

>prot_M-pyrifera_M_contig68531.16489.1 ID=prot_M-pyrifera_M_contig68531.16489.1|Name=mRNA_M-pyrifera_M_contig68531.16489.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=224bp
LLSEHTVFAAPGYSNFLLAHLDGPSTCARKSRLLRAFREFFLGGMGVPTP
AARSNERLRVVVVSRRPYDKFVGHAFVGRQVDNEQELMEAFQASGGADAF
LAAGADVKLVDLVHLDFAEQLELIASTDILVGMHGAALSYAAFLPPWAGV
LELWPKTTKMWRCFEHLAHLSGVAYQRWANPDKSRYREDKQGDYTTLDVP
AVVELAKTLAKAVREERRNLGLA*
back to top

mRNA from alignment at M-pyrifera_M_contig68531:136..807+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68531.16489.1 ID=mRNA_M-pyrifera_M_contig68531.16489.1|Name=mRNA_M-pyrifera_M_contig68531.16489.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig68531:136..807+ (Macrocystis pyrifera P11B4 male)
CTGCTGTCAGAACACACCGTTTTCGCCGCCCCAGGATACTCCAACTTCCT CCTCGCCCACCTCGACGGCCCAAGCACGTGCGCACGAAAGTCGAGGCTGC TCCGAGCGTTTCGCGAATTCTTCCTTGGCGGAATGGGAGTGCCCACGCCC GCGGCTCGCAGCAACGAGCGCCTGCGAGTGGTGGTCGTGTCCCGGCGACC CTACGACAAGTTCGTAGGCCACGCCTTTGTCGGAAGACAGGTCGACAACG AGCAGGAGCTCATGGAAGCCTTCCAGGCCAGCGGAGGAGCTGATGCTTTC CTCGCAGCGGGCGCTGACGTGAAGCTCGTCGACCTCGTGCACCTCGATTT CGCAGAACAGCTCGAGCTCATCGCCAGCACCGACATCCTCGTCGGCATGC ACGGCGCAGCGCTCAGCTACGCAGCCTTCCTCCCGCCCTGGGCCGGCGTC CTCGAGCTCTGGCCAAAGACCACCAAGATGTGGAGGTGCTTCGAGCACCT CGCACACCTCTCCGGAGTCGCCTACCAGCGCTGGGCAAACCCGGACAAGT CCCGGTACAGGGAGGACAAGCAAGGAGACTACACCACCCTAGACGTGCCC GCAGTTGTGGAACTCGCCAAAACACTTGCCAAGGCGGTCAGAGAGGAAAG GAGAAACCTTGGACTTGCATAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig68531:136..807+

>mRNA_M-pyrifera_M_contig68531.16489.1 ID=mRNA_M-pyrifera_M_contig68531.16489.1|Name=mRNA_M-pyrifera_M_contig68531.16489.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1344bp|location=Sequence derived from alignment at M-pyrifera_M_contig68531:136..807+ (Macrocystis pyrifera P11B4 male)
CTGCTGTCAGAACACACCGTTTTCGCCGCCCCAGGATACTCCAACTTCCT
CCTCGCCCACCTCGACGGCCCAAGCACGTGCGCACGAAAGTCGAGGCTGC
TCCGAGCGTTTCGCGAATTCTTCCTTGGCGGAATGGGAGTGCCCACGCCC
GCGGCTCGCAGCAACGAGCGCCTGCGAGTGGTGGTCGTGTCCCGGCGACC
CTACGACAAGTTCGTAGGCCACGCCTTTGTCGGAAGACAGGTCGACAACG
AGCAGGAGCTCATGGAAGCCTTCCAGGCCAGCGGAGGAGCTGATGCTTTC
CTCGCAGCGGGCGCTGACGTGAAGCTCGTCGACCTCGTGCACCTCGATTT
CGCAGAACAGCTCGAGCTCATCGCCAGCACCGACATCCTCGTCGGCATGC
ACGGCGCAGCGCTCAGCTACGCAGCCTTCCTCCCGCCCTGGGCCGGCGTC
CTCGAGCTCTGGCCAAAGACCACCAAGATGTGGAGGTGCTTCGAGCACCT
CGCACACCTCTCCGGAGTCGCCTACCAGCGCTGGGCAAACCCGGACAAGT
CCCGGTACAGGGAGGACAAGCAAGGAGACTACACCACCCTAGACGTGCCC
GCAGTTGTGGAACTCGCCAAAACACTTGCCAAGGCGGTCAGAGAGGAAAG
GAGAAACCTTGGACTTGCATAGCTGCTGTCAGAACACACCGTTTTCGCCG
CCCCAGGATACTCCAACTTCCTCCTCGCCCACCTCGACGGCCCAAGCACG
TGCGCACGAAAGTCGAGGCTGCTCCGAGCGTTTCGCGAATTCTTCCTTGG
CGGAATGGGAGTGCCCACGCCCGCGGCTCGCAGCAACGAGCGCCTGCGAG
TGGTGGTCGTGTCCCGGCGACCCTACGACAAGTTCGTAGGCCACGCCTTT
GTCGGAAGACAGGTCGACAACGAGCAGGAGCTCATGGAAGCCTTCCAGGC
CAGCGGAGGAGCTGATGCTTTCCTCGCAGCGGGCGCTGACGTGAAGCTCG
TCGACCTCGTGCACCTCGATTTCGCAGAACAGCTCGAGCTCATCGCCAGC
ACCGACATCCTCGTCGGCATGCACGGCGCAGCGCTCAGCTACGCAGCCTT
CCTCCCGCCCTGGGCCGGCGTCCTCGAGCTCTGGCCAAAGACCACCAAGA
TGTGGAGGTGCTTCGAGCACCTCGCACACCTCTCCGGAGTCGCCTACCAG
CGCTGGGCAAACCCGGACAAGTCCCGGTACAGGGAGGACAAGCAAGGAGA
CTACACCACCCTAGACGTGCCCGCAGTTGTGGAACTCGCCAAAACACTTG
CCAAGGCGGTCAGAGAGGAAAGGAGAAACCTTGGACTTGCATAG
back to top