mRNA_M-pyrifera_M_contig6853.16488.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6853.16488.1
Unique NamemRNA_M-pyrifera_M_contig6853.16488.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6853.16488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6853contigM-pyrifera_M_contig6853:9152..9961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size811
Cds size732
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816577.4261775-UTR-M-pyrifera_M_contig6853:9151..92291622816577.4261775-UTR-M-pyrifera_M_contig6853:9151..9229Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6853 9152..9229 +
1692278057.2049124-UTR-M-pyrifera_M_contig6853:9151..92291692278057.2049124-UTR-M-pyrifera_M_contig6853:9151..9229Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6853 9152..9229 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816577.4379191-CDS-M-pyrifera_M_contig6853:9229..99611622816577.4379191-CDS-M-pyrifera_M_contig6853:9229..9961Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6853 9230..9961 +
1692278057.2178133-CDS-M-pyrifera_M_contig6853:9229..99611692278057.2178133-CDS-M-pyrifera_M_contig6853:9229..9961Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6853 9230..9961 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6853.16488.1prot_M-pyrifera_M_contig6853.16488.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6853 9230..9961 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6853.16488.1

>prot_M-pyrifera_M_contig6853.16488.1 ID=prot_M-pyrifera_M_contig6853.16488.1|Name=mRNA_M-pyrifera_M_contig6853.16488.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=244bp
MCSCCSRRLEQGEEAVLYLKRQQPPAANWNPNQVQTMHMLLLGDFTQSAV
RRRNNDFLPAFHLLVGVTLTLFLPVKPLLKERVADRNPERNPEPMVRQQL
FFLYLYFHTQSLSTHSDTRGSGNHHTSSSTTETRLSSVPSSASQDRPVSG
QTYHKIQDNSSANPPHRLLATTQSQRNTGAWGRSRPPSIVSVYTMLLSVC
LYCLPWPLTRTPTVSFPRATRRKIRRMYTCPPIPKMDSQKQHPR
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mRNA from alignment at M-pyrifera_M_contig6853:9152..9961+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6853.16488.1 ID=mRNA_M-pyrifera_M_contig6853.16488.1|Name=mRNA_M-pyrifera_M_contig6853.16488.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig6853:9152..9961+ (Macrocystis pyrifera P11B4 male)
GGACATATTTGGCAGCGTCGAGAGGAGTCCCGCCTGCACACAAAAAACGT
GCTTACTCAGTAATTAGTCGTGTATATAATGTGCTCATGTTGTTCGCGTC
GCCTCGAACAAGGAGAAGAAGCCGTACTATACCTCAAACGACAACAACCA
CCTGCCGCCAACTGGAATCCGAATCAAGTACAGACGATGCACATGTTGCT
ACTTGGCGACTTCACACAGAGTGCGGTGCGCCGCAGAAACAACGACTTCC
TTCCCGCGTTCCATTTATTGGTTGGCGTGACACTCACTCTCTTCTTGCCT
GTCAAGCCGCTTCTGAAAGAGCGCGTTGCAGACAGAAACCCCGAGAGGAA
CCCCGAACCCATGGTACGGCAACAGCTCTTTTTTTTGTACCTCTATTTTC
ACACGCAATCCCTGTCAACACACTCAGACACCCGCGGCAGCGGTAACCAT
CACACTAGTTCGTCAACGACCGAAACACGACTATCGTCAGTACCTTCATC
TGCAAGCCAAGATAGACCTGTGTCGGGGCAAACGTATCATAAAATACAGG
ACAACTCATCGGCAAACCCACCTCACCGCTTGCTGGCGACAACCCAGTCT
CAACGAAACACCGGCGCGTGGGGTAGGAGCCGGCCACCTTCCATTGTAAG
CGTCTACACAATGCTTTTATCTGTCTGCTTGTATTGTCTACCCTGGCCTC
TGACCCGGACCCCGACCGTCTCGTTTCCTAGAGCTACGCGTCGGAAAATC
CGACGTATGTACACCTGTCCACCCATACCAAAAATGGATTCCCAAAAGCA
GCACCCGCGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6853:9152..9961+

>mRNA_M-pyrifera_M_contig6853.16488.1 ID=mRNA_M-pyrifera_M_contig6853.16488.1|Name=mRNA_M-pyrifera_M_contig6853.16488.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1464bp|location=Sequence derived from alignment at M-pyrifera_M_contig6853:9152..9961+ (Macrocystis pyrifera P11B4 male)
ATGTGCTCATGTTGTTCGCGTCGCCTCGAACAAGGAGAAGAAGCCGTACT
ATACCTCAAACGACAACAACCACCTGCCGCCAACTGGAATCCGAATCAAG
TACAGACGATGCACATGTTGCTACTTGGCGACTTCACACAGAGTGCGGTG
CGCCGCAGAAACAACGACTTCCTTCCCGCGTTCCATTTATTGGTTGGCGT
GACACTCACTCTCTTCTTGCCTGTCAAGCCGCTTCTGAAAGAGCGCGTTG
CAGACAGAAACCCCGAGAGGAACCCCGAACCCATGGTACGGCAACAGCTC
TTTTTTTTGTACCTCTATTTTCACACGCAATCCCTGTCAACACACTCAGA
CACCCGCGGCAGCGGTAACCATCACACTAGTTCGTCAACGACCGAAACAC
GACTATCGTCAGTACCTTCATCTGCAAGCCAAGATAGACCTGTGTCGGGG
CAAACGTATCATAAAATACAGGACAACTCATCGGCAAACCCACCTCACCG
CTTGCTGGCGACAACCCAGTCTCAACGAAACACCGGCGCGTGGGGTAGGA
GCCGGCCACCTTCCATTGTAAGCGTCTACACAATGCTTTTATCTGTCTGC
TTGTATTGTCTACCCTGGCCTCTGACCCGGACCCCGACCGTCTCGTTTCC
TAGAGCTACGCGTCGGAAAATCCGACGTATGTACACCTGTCCACCCATAC
CAAAAATGGATTCCCAAAAGCAGCACCCGCGTATGTGCTCATGTTGTTCG
CGTCGCCTCGAACAAGGAGAAGAAGCCGTACTATACCTCAAACGACAACA
ACCACCTGCCGCCAACTGGAATCCGAATCAAGTACAGACGATGCACATGT
TGCTACTTGGCGACTTCACACAGAGTGCGGTGCGCCGCAGAAACAACGAC
TTCCTTCCCGCGTTCCATTTATTGGTTGGCGTGACACTCACTCTCTTCTT
GCCTGTCAAGCCGCTTCTGAAAGAGCGCGTTGCAGACAGAAACCCCGAGA
GGAACCCCGAACCCATGGTACGGCAACAGCTCTTTTTTTTGTACCTCTAT
TTTCACACGCAATCCCTGTCAACACACTCAGACACCCGCGGCAGCGGTAA
CCATCACACTAGTTCGTCAACGACCGAAACACGACTATCGTCAGTACCTT
CATCTGCAAGCCAAGATAGACCTGTGTCGGGGCAAACGTATCATAAAATA
CAGGACAACTCATCGGCAAACCCACCTCACCGCTTGCTGGCGACAACCCA
GTCTCAACGAAACACCGGCGCGTGGGGTAGGAGCCGGCCACCTTCCATTG
TAAGCGTCTACACAATGCTTTTATCTGTCTGCTTGTATTGTCTACCCTGG
CCTCTGACCCGGACCCCGACCGTCTCGTTTCCTAGAGCTACGCGTCGGAA
AATCCGACGTATGTACACCTGTCCACCCATACCAAAAATGGATTCCCAAA
AGCAGCACCCGCGT
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