mRNA_M-pyrifera_M_contig68469.16477.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68469.16477.1
Unique NamemRNA_M-pyrifera_M_contig68469.16477.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig68469.16477.1 vs. uniprot
Match: A0A2D9CLH4_9BACT (Aminotran_5 domain-containing protein n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A2D9CLH4_9BACT)

HSP 1 Score: 204 bits (519), Expect = 6.020e-61
Identity = 91/134 (67.91%), Postives = 108/134 (80.60%), Query Frame = 1
Query:    1 FDYMGTNDYSANLSIPVSIAHMGAQLPGGWDALRKRNHDLIVEGAKIVCDAIGIEQRVPESMIGTMIAIPLPGVPSDGELYDNALWDTLYLKHGIQVPIWELPGIHPSVIRMSAQLYNTIEDFEKLGEVLNKAL 402
            FDY GTNDY+ NL IPV+I HMGAQLPGGWDALRKRNHD+++ GA+IVCD +GIEQ+VPESMIGTM++IPLPG      L    LWD LYL HG+QVP+W+LPG+   + R+SAQLYNT+EDFEKLGE L   L
Sbjct:  387 FDYTGTNDYTGNLVIPVAIEHMGAQLPGGWDALRKRNHDMVIAGAQIVCDMLGIEQQVPESMIGTMVSIPLPGKCEPSNLLGEGLWDRLYLNHGLQVPVWDLPGVCDRMTRISAQLYNTLEDFEKLGEALKVEL 520          
BLAST of mRNA_M-pyrifera_M_contig68469.16477.1 vs. uniprot
Match: A0A2A4RDT0_9BACT (Aminotran_5 domain-containing protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A2A4RDT0_9BACT)

HSP 1 Score: 199 bits (505), Expect = 9.820e-60
Identity = 90/130 (69.23%), Postives = 103/130 (79.23%), Query Frame = 1
Query:    1 FDYMGTNDYSANLSIPVSIAHMGAQLPGGWDALRKRNHDLIVEGAKIVCDAIGIEQRVPESMIGTMIAIPLPGVPSDGELYDNALWDTLYLKHGIQVPIWELPGIHPSVIRMSAQLYNTIEDFEKLGEVL 390
            FDY+GTNDY+ N  IPV+I HMGAQLPGGWD LR+RNHDL+V GAK++CDAIGIEQ VPESMIGTM+ IPLPGV   G L    LWD LYL HGIQVPIWELPG+H  V+R+S QL+N + DFE L   L
Sbjct:  298 FDYVGTNDYTGNHVIPVAIEHMGAQLPGGWDELRQRNHDLVVHGAKLICDAIGIEQVVPESMIGTMVGIPLPGVCEPGSLMGEGLWDRLYLNHGIQVPIWELPGVHGRVMRVSCQLFNXVGDFEALAGAL 427          
BLAST of mRNA_M-pyrifera_M_contig68469.16477.1 vs. uniprot
Match: A0A3M2BII9_9BACT (Aminotransferase class V-fold PLP-dependent enzyme n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2BII9_9BACT)

HSP 1 Score: 152 bits (384), Expect = 5.590e-42
Identity = 72/135 (53.33%), Postives = 93/135 (68.89%), Query Frame = 1
Query:    4 DYMGTNDYSANLSIPVSIAHMGAQLPGGWDALRKRNHDLIVEGAKIVCDAIGIEQRVPESMIGTMIAIPLPGVPSDGE--LYDNALWDTLYLKHGIQVPIWELPGIHPSVIRMSAQLYNTIEDFEKLGEVLNKAL 402
            DY+GTNDY+ANL IP +I HM AQ+PGGWD +R+ NH  IVE   ++C     E   PESMIG+M ++ LP  P       YD+AL D L  +HGIQVP+WE+PG+ P V+RMSAQLYN + ++E L E LN+ L
Sbjct:  267 DYVGTNDYTANLVIPDAIEHMAAQVPGGWDEIRRLNHAKIVEARSLICARTPAEAVAPESMIGSMASVLLPPAPDPSRPTRYDDALQDALLDRHGIQVPVWEMPGVAPRVMRMSAQLYNHMGEYELLAEALNEEL 401          
BLAST of mRNA_M-pyrifera_M_contig68469.16477.1 vs. uniprot
Match: A0A3M2CVH4_9BACT (Aminotransferase class V-fold PLP-dependent enzyme n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2CVH4_9BACT)

HSP 1 Score: 146 bits (368), Expect = 1.510e-39
Identity = 66/137 (48.18%), Postives = 97/137 (70.80%), Query Frame = 1
Query:    1 FDYMGTNDYSANLSIPVSIAHMGAQLPGGWDALRKRNHDLIVEGAKIVCDAIGIEQRVPESMIGTMIAIPLP---GVPSDGELYDNALWDTLYLKHGIQVPIWELPGIHPSVIRMSAQLYNTIEDFEKLGEVLNKAL 402
            FDY+GT D + NL +PV+I H+ AQ PGG   L+KRNH+++++GA++V DA G+   VPESM+ +M+++PLP   G    G +YD++LWD L  +H IQ P W L G+ P ++R+S Q +N+I DFE+L EVL + L
Sbjct:  280 FDYVGTEDPTGNLVLPVAIEHLSAQHPGGLAGLQKRNHEVVMQGARLVADAAGVAMPVPESMVPSMVSLPLPVPEGGVKKGAMYDDSLWDALRNEHRIQAPCWALAGVAPRLMRVSCQWHNSIADFERLAEVLPRLL 416          
BLAST of mRNA_M-pyrifera_M_contig68469.16477.1 vs. uniprot
Match: UPI001AC51716 (Isopenicillin-N epimerase n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=UPI001AC51716)

HSP 1 Score: 137 bits (345), Expect = 3.490e-36
Identity = 66/138 (47.83%), Postives = 91/138 (65.94%), Query Frame = 1
Query:    1 FDYMGTNDYSANLSIPVSIAHMGAQLPGGWDALRKRNHDLIVEGAKIVCDAIGIEQRVPESMIGTMIAIPLPGVPSD----GELYDNALWDTLYLKHGIQVPIWELPGIHPSVIRMSAQLYNTIEDFEKLGEVLNKAL 402
            +DY GT DY+A LSIP +I  MG+ L G W AL + NH+L++ GA++V  A+G+E + PESMIG M  +PLP   ++       YD+ L D L+ +HGI VPIW +      V+R+SAQ+YNTI  +E+LGE L K L
Sbjct:  269 YDYFGTGDYTAVLSIPQAIESMGSLLAGSWPALMRHNHELVMRGAEVVARALGVEPQSPESMIGCMATLPLPEPAAELADRPTRYDDPLQDALFERHGIVVPIWRMGAREQRVVRISAQVYNTITQYERLGEALAKEL 406          
BLAST of mRNA_M-pyrifera_M_contig68469.16477.1 vs. uniprot
Match: A0A5M4D8J2_9CYAN (Aminotransferase class V-fold PLP-dependent enzyme n=1 Tax=Cyanobacteria bacterium CYA TaxID=2484221 RepID=A0A5M4D8J2_9CYAN)

HSP 1 Score: 137 bits (344), Expect = 4.200e-36
Identity = 62/135 (45.93%), Postives = 90/135 (66.67%), Query Frame = 1
Query:    4 DYMGTNDYSANLSIPVSIAHMGAQLPGGWDALRKRNHDLIVEGAKIVCDAIGIEQRVPESMIGTMIAIPLPGVPSDGE--LYDNALWDTLYLKHGIQVPIWELPGIHPSVIRMSAQLYNTIEDFEKLGEVLNKAL 402
            DY+GT DY+ANL IP +I H+GAQLPGGW+A+   NH  ++E   ++CD   ++   PE MIGTM ++ LP  P       Y++ L DT+  +H IQ+P+WE+  + P V+R+SAQLYN + ++E L E LN+ L
Sbjct:  266 DYVGTGDYTANLVIPDAIEHLGAQLPGGWEAIIASNHAKVIEARSMLCDRCPVQAMAPEQMIGTMASVMLPENPDRTRPTCYEDCLQDTMNERHAIQIPVWEMYPVTPRVMRISAQLYNHMGEYEMLAEALNEEL 400          
BLAST of mRNA_M-pyrifera_M_contig68469.16477.1 vs. uniprot
Match: A0A7Y5VXP5_9BACT (Aminotransferase class V-fold PLP-dependent enzyme n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Y5VXP5_9BACT)

HSP 1 Score: 127 bits (320), Expect = 2.100e-32
Identity = 61/141 (43.26%), Postives = 88/141 (62.41%), Query Frame = 1
Query:    1 FDYMGTNDYSANLSIPVSIAHMGAQLPGGWDALRKRNHDLIVEGAKIVCDAIGIEQRVPESMIGTMIAIPLPGVPSD----GELYDNALWDTLYLKHGIQVPIWEL-------PGIHPSVIRMSAQLYNTIEDFEKLGEVL 390
            FDYMGT+DY+  L +P +I  M   +PGGW+ +R+RN  L++E  + VC   G+    P+SM+G+M+++PLP   +       LYD+ L D L  +H +QVPIW L       PG+   +IR+SAQLYN+IE +  LGE L
Sbjct:  286 FDYMGTDDYTGMLCVPHAIEAMAKMIPGGWEEIRRRNRSLVLEAREAVCAMAGLRPACPDSMVGSMVSLPLPEADASLSGRATLYDDPLQDALLERHRVQVPIWRLGEGTPANPGVR--IIRLSAQLYNSIEQYRYLGEAL 424          
BLAST of mRNA_M-pyrifera_M_contig68469.16477.1 vs. uniprot
Match: A0A4P5X7H8_9BACT (Isopenicillin-N epimerase n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A4P5X7H8_9BACT)

HSP 1 Score: 125 bits (315), Expect = 6.860e-32
Identity = 60/142 (42.25%), Postives = 90/142 (63.38%), Query Frame = 1
Query:    1 FDYMGTNDYSANLSIPVSIAHMGAQLPGGWDALRKRNHDLIVEGAKIVCDAIGIEQRVPESMIGTMIAIPLPG--------VPSDGELYDNALWDTLYLKHGIQVPIWELPGIHPSVIRMSAQLYNTIEDFEKLGEVLNKAL 402
            FDY+GT DY+A  +IP +IA M A  PGGW A+ K NH+L + G  +VC  +GIE   P++M+G+++++ LPG        V +    Y +AL D L   HGIQVP+W + G+   + R+SAQ+YN+I+++E+L   L   L
Sbjct:  257 FDYVGTQDYTAIYAIPDAIAAMRAMQPGGWPAVMKHNHELAIRGRDVVCKRLGIEPAAPDAMLGSIVSMILPGHDAQRHARVMARETKYHDALQDRLLHMHGIQVPVWGVAGLTMRICRISAQVYNSIDEYERLAGALEGEL 398          
BLAST of mRNA_M-pyrifera_M_contig68469.16477.1 vs. uniprot
Match: A0A7D8YKB8_9BACT (Aminotransferase class V-fold PLP-dependent enzyme n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7D8YKB8_9BACT)

HSP 1 Score: 126 bits (317), Expect = 7.080e-32
Identity = 59/139 (42.45%), Postives = 89/139 (64.03%), Query Frame = 1
Query:    1 FDYMGTNDYSANLSIPVSIAHMGAQLPGGWDALRKRNHDLIVEGAKIVCDAIGIEQRVPESMIGTMIAIPLPGVP-SDGEL----YDNALWDTLYLKHGIQVPIWELPGIHPSVIRMSAQLYNTIEDFEKLGEVLNKAL 402
            FDY+GTNDYS  L+ P +I  + + LPGGWD L  RNH+L++EG  ++CDA+G+E   P+ M+ +M +I +PG+  + G +    Y++ L   L   H +QVP+W LP     ++R+SAQLYN+ E +  L E L + L
Sbjct:  314 FDYVGTNDYSPVLAAPEAIDFLASLLPGGWDELTARNHELVIEGRNLICDALGVEPPAPDDMLASMASIIIPGLGLTSGGIKPGGYEDPLQARLVEHHRVQVPVWSLPSKGHRILRISAQLYNSREQYAYLAEALKREL 452          
BLAST of mRNA_M-pyrifera_M_contig68469.16477.1 vs. uniprot
Match: A0A4P5X6Z6_9BACT (Isopenicillin-N epimerase n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A4P5X6Z6_9BACT)

HSP 1 Score: 125 bits (314), Expect = 2.300e-31
Identity = 62/142 (43.66%), Postives = 91/142 (64.08%), Query Frame = 1
Query:    1 FDYMGTNDYSANLSIPVSIAHMGAQLPGGWDALRKRNHDLIVEGAKIVCDAIG----IEQRVPESMIGTMIAIPLPGVPSDGEL----YDNALWDTLYLKHGIQVPIWELPGIHPSVIRMSAQLYNTIEDFEKLGEVLNKAL 402
            FDY GT+DYSA +++P +I  MGA LPGGW AL + NH +I++  KI+C+ +G    ++  VP++M+GTM+ + LP  P   +     YD+AL D L  K+ I VPIW L   +  +IR+SAQ+YNT  ++E L + L   L
Sbjct:  324 FDYQGTDDYSAMVTLPAAIDAMGAILPGGWPALMRHNHHMILQARKILCEHLGSLYNLQPCVPDAMVGTMVTLKLPEPPEHLKTRPTCYDDALQDVLLDKYRIVVPIWRLMSTNERIIRVSAQVYNTTAEYEYLAQALKTEL 465          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68469.16477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D9CLH4_9BACT6.020e-6167.91Aminotran_5 domain-containing protein n=2 Tax=Phyc... [more]
A0A2A4RDT0_9BACT9.820e-6069.23Aminotran_5 domain-containing protein n=1 Tax=bact... [more]
A0A3M2BII9_9BACT5.590e-4253.33Aminotransferase class V-fold PLP-dependent enzyme... [more]
A0A3M2CVH4_9BACT1.510e-3948.18Aminotransferase class V-fold PLP-dependent enzyme... [more]
UPI001AC517163.490e-3647.83Isopenicillin-N epimerase n=1 Tax=Phycisphaerales ... [more]
A0A5M4D8J2_9CYAN4.200e-3645.93Aminotransferase class V-fold PLP-dependent enzyme... [more]
A0A7Y5VXP5_9BACT2.100e-3243.26Aminotransferase class V-fold PLP-dependent enzyme... [more]
A0A4P5X7H8_9BACT6.860e-3242.25Isopenicillin-N epimerase n=1 Tax=Phycisphaerae ba... [more]
A0A7D8YKB8_9BACT7.080e-3242.45Aminotransferase class V-fold PLP-dependent enzyme... [more]
A0A4P5X6Z6_9BACT2.300e-3143.66Isopenicillin-N epimerase n=1 Tax=Phycisphaerae ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68469contigM-pyrifera_M_contig68469:830..1234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score110.9
Seed ortholog evalue4.5e-22
Seed eggNOG ortholog1170562.Cal6303_1535
Preferred namecefD
KEGG rclassRC00302
KEGG koko:K04127,ko:K11325,ko:K21174
KEGG ReactionR04147
KEGG Pathwayko00311,ko01059,ko01100,ko01130,map00311,map01059,map01100,map01130
KEGG ModuleM00673,M00825
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM aminotransferase class V
EggNOG OGs1G0VG@1117,COG0520@1,COG0520@2
EC5.1.1.17
COG Functional cat.E
Best tax levelCyanobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size405
Cds size396
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816576.710462-CDS-M-pyrifera_M_contig68469:829..12251622816576.710462-CDS-M-pyrifera_M_contig68469:829..1225Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68469 830..1225 -
1692278056.7380323-CDS-M-pyrifera_M_contig68469:829..12251692278056.7380323-CDS-M-pyrifera_M_contig68469:829..1225Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68469 830..1225 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816576.721817-UTR-M-pyrifera_M_contig68469:1225..12341622816576.721817-UTR-M-pyrifera_M_contig68469:1225..1234Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig68469 1226..1234 -
1692278056.7552383-UTR-M-pyrifera_M_contig68469:1225..12341692278056.7552383-UTR-M-pyrifera_M_contig68469:1225..1234Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig68469 1226..1234 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68469.16477.1prot_M-pyrifera_M_contig68469.16477.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68469 830..1225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68469.16477.1

>prot_M-pyrifera_M_contig68469.16477.1 ID=prot_M-pyrifera_M_contig68469.16477.1|Name=mRNA_M-pyrifera_M_contig68469.16477.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
MGTNDYSANLSIPVSIAHMGAQLPGGWDALRKRNHDLIVEGAKIVCDAIG
IEQRVPESMIGTMIAIPLPGVPSDGELYDNALWDTLYLKHGIQVPIWELP
GIHPSVIRMSAQLYNTIEDFEKLGEVLNKAL*
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mRNA from alignment at M-pyrifera_M_contig68469:830..1234-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68469.16477.1 ID=mRNA_M-pyrifera_M_contig68469.16477.1|Name=mRNA_M-pyrifera_M_contig68469.16477.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=405bp|location=Sequence derived from alignment at M-pyrifera_M_contig68469:830..1234- (Macrocystis pyrifera P11B4 male)
TTCGACTACATGGGAACGAACGACTACTCTGCGAATCTCTCGATCCCTGT CTCGATCGCGCACATGGGAGCGCAGCTCCCAGGGGGATGGGATGCGCTAC GCAAGCGCAATCACGATCTGATCGTCGAAGGCGCGAAGATCGTCTGCGAC GCGATCGGGATCGAGCAGCGAGTCCCTGAATCGATGATCGGCACGATGAT CGCGATCCCGCTCCCGGGAGTCCCATCTGACGGCGAGCTCTACGACAACG CGCTCTGGGACACGCTCTATCTCAAGCACGGCATCCAGGTACCGATCTGG GAACTGCCGGGGATCCATCCAAGCGTGATTCGGATGAGTGCGCAGCTGTA CAACACGATCGAGGACTTTGAGAAGCTGGGAGAGGTATTAAACAAAGCAC TTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68469:830..1234-

>mRNA_M-pyrifera_M_contig68469.16477.1 ID=mRNA_M-pyrifera_M_contig68469.16477.1|Name=mRNA_M-pyrifera_M_contig68469.16477.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig68469:830..1234- (Macrocystis pyrifera P11B4 male)
ATGGGAACGAACGACTACTCTGCGAATCTCTCGATCCCTGTCTCGATCGC
GCACATGGGAGCGCAGCTCCCAGGGGGATGGGATGCGCTACGCAAGCGCA
ATCACGATCTGATCGTCGAAGGCGCGAAGATCGTCTGCGACGCGATCGGG
ATCGAGCAGCGAGTCCCTGAATCGATGATCGGCACGATGATCGCGATCCC
GCTCCCGGGAGTCCCATCTGACGGCGAGCTCTACGACAACGCGCTCTGGG
ACACGCTCTATCTCAAGCACGGCATCCAGGTACCGATCTGGGAACTGCCG
GGGATCCATCCAAGCGTGATTCGGATGAGTGCGCAGCTGTACAACACGAT
CGAGGACTTTGAGAAGCTGGGAGAGGTATTAAACAAAGCACTTTGAATGG
GAACGAACGACTACTCTGCGAATCTCTCGATCCCTGTCTCGATCGCGCAC
ATGGGAGCGCAGCTCCCAGGGGGATGGGATGCGCTACGCAAGCGCAATCA
CGATCTGATCGTCGAAGGCGCGAAGATCGTCTGCGACGCGATCGGGATCG
AGCAGCGAGTCCCTGAATCGATGATCGGCACGATGATCGCGATCCCGCTC
CCGGGAGTCCCATCTGACGGCGAGCTCTACGACAACGCGCTCTGGGACAC
GCTCTATCTCAAGCACGGCATCCAGGTACCGATCTGGGAACTGCCGGGGA
TCCATCCAAGCGTGATTCGGATGAGTGCGCAGCTGTACAACACGATCGAG
GACTTTGAGAAGCTGGGAGAGGTATTAAACAAAGCACTTTGA
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