mRNA_M-pyrifera_M_contig68434.16472.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68434.16472.1
Unique NamemRNA_M-pyrifera_M_contig68434.16472.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig68434.16472.1 vs. uniprot
Match: A0A0A0L4H9_CUCSA (Uncharacterized protein n=4 Tax=Benincaseae TaxID=1003877 RepID=A0A0A0L4H9_CUCSA)

HSP 1 Score: 86.7 bits (213), Expect = 1.500e-16
Identity = 62/186 (33.33%), Postives = 96/186 (51.61%), Query Frame = 1
Query:   40 LRLLEVSEELLSEIESGKSLMIKATADQDAVMCTGGCTYGMQFVETSNSVLLVPQALKPEDSGSTGDGEASXXXXXXXXXDVSEEKVAEIAGIVRGTYTLHEMPSRVWQLRELLEQTR-----DAETEKMSLRRQRLFAWEDLRRVVQVSDLELWQGLQELGAIRVGKHWRVLTPSFFREAMNAVL 582
            L LLEV E+LL E+   + + I+   ++DAV CT   TYG+++V TSNSVLL+P +         G  E           D S+E VA +  +  G   LHE+  R+ +L+ LL +       + E E +    +R++ W+DL   VQ SD EL  GLQ L A+ +  +WR++   +    +  +L
Sbjct:   37 LVLLEVDEKLLEEVLHQR-VSIRGQPEEDAVFCTKSKTYGIKYVGTSNSVLLIPPS---------GRSEYYTNELDSHQKDNSKE-VAPVIKVAPGIMELHEIAPRIDKLKLLLSEEHYSFADEWENEAVDKYEKRMYNWDDLINKVQASDNELKAGLQALSAVEIDGYWRIVDEKYMDSMLQMLL 211          
BLAST of mRNA_M-pyrifera_M_contig68434.16472.1 vs. uniprot
Match: A0A6J1CZB2_MOMCH (sister chromatid cohesion protein DCC1 n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1CZB2_MOMCH)

HSP 1 Score: 85.1 bits (209), Expect = 5.350e-16
Identity = 60/189 (31.75%), Postives = 103/189 (54.50%), Query Frame = 1
Query:   40 LRLLEVSEELLSEIESGKSLMIKATADQDAVMCTGGCTYGMQFVETSNSVLLVPQALKPEDSGSTGDGEASXXXXXXXXXDVSEEKVAEIAGIVRGTYTLHEMPSRVWQLRELLEQ-----TRDAETEKMSLRRQRLFAWEDLRRVVQVSDLELWQGLQELGAIRVGKHWRVLTPSFFREAMNAVLEVV 591
            L LLEV E+LL E+   + + I+   ++DAV CT   TYG+++V TSNSVLL+P + + E   +  D               S  KVA +  +  G   L E+  R+ +L+ LL +       + E++++    ++L+ W+DL   +Q SD E+  GLQEL A+ +  +WRV+   +    M+++L+++
Sbjct:   37 LVLLEVDEKLLEEVLHQR-VSIRGQPEEDAVFCTKSKTYGIKYVGTSNSVLLIPPSGRLEYYENDLDSHGKD----------SSRKVASVIKVAPGIMELVEIAPRIDKLKLLLSEKPYSLADEWESDEVDKYEKKLYNWDDLINKIQASDDEMKAGLQELSAVEIDGYWRVVDEKY----MDSILQML 210          
BLAST of mRNA_M-pyrifera_M_contig68434.16472.1 vs. uniprot
Match: A0A1S2XMT3_CICAR (sister chromatid cohesion protein DCC1 n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2XMT3_CICAR)

HSP 1 Score: 84.7 bits (208), Expect = 7.510e-16
Identity = 63/190 (33.16%), Postives = 102/190 (53.68%), Query Frame = 1
Query:   40 LRLLEVSEELLSEIESGKSLMIKATADQDAVMCTGGCTYGMQFVETSNSVLLVPQALKPE-DSGSTGDGEASXXXXXXXXXDVSEEKVAEIAGIVRGTYTLHEMPSRVWQLRELLEQT--RDAETEKMSLR-----RQRLFAWEDLRRVVQVSDLELWQGLQELGAIRVGKHWRVLTPSFFREAMNAVLE 585
            L +LE+ ++LL ++  G+ ++++   ++DAV+CT   TYGM+FV TSNSVLLVP + + E D+    D             D  E+ V  +  +V G   L E+  R+ +L+ LL +   R  ET+  +L      R  L+ W DL   +Q SD EL  GLQ L A+ +  +WR++  S+    +  +L+
Sbjct:   39 LIILELDDKLLPDV-LGERVVLRGQPEEDAVLCTQSKTYGMKFVGTSNSVLLVPPSNQSECDNLQKNDSS-----------DYDEKVVTPVIKVVLGNMELIEVSPRLDKLKLLLSENVYRSDETDMENLEENQECRTGLYNWNDLINNIQASDEELRFGLQTLSAVEINGYWRLVDESYMDMILGMLLK 216          
BLAST of mRNA_M-pyrifera_M_contig68434.16472.1 vs. uniprot
Match: UPI001ED86812 (sister chromatid cohesion protein DCC1 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED86812)

HSP 1 Score: 83.2 bits (204), Expect = 2.770e-15
Identity = 56/198 (28.28%), Postives = 100/198 (50.51%), Query Frame = 1
Query:    7 LKFSESLDPGSLRLLEVSEELLSEIESGKSLMIKATADQDAVMCTGGCTYGMQFVETSNSVLLVPQALKPEDSGSTGDGEASXXXXXXXXXDVSEEKVAE---IAGIVRGTYTLHEMPSRVWQLRELLEQTRDAETEKMSLRRQRLFAWEDLRRVVQVSDLELWQGLQELGAIRVGKHWRVLTPSFFREAMNAVLEVV 591
            L F E  +    ++LE+++ELL  ++ GKSL+I+   D +AV+CT   TY ++  ETSNS+LL+P+ + P+D  ++                  EE++ E   +  ++   + L     RV ++  LLE +     E  +     +++ EDL  +VQ S+ EL   L E+ A  +  +WR+L   +    +  +L +V
Sbjct:   42 LFFVEDDEESDFKILELNKELLECVQEGKSLVIRGLEDDEAVLCTDDATYEIRGAETSNSMLLIPELIFPDDVPNS-----------------LEERIIEEKTVISVIHNYFELRRCQPRVNKIARLLESSVYRGKEHENEVSGTMYSLEDLLDIVQCSNKELASALAEIEAYNINGYWRLLEFDYHFRVLTYILNLV 222          
BLAST of mRNA_M-pyrifera_M_contig68434.16472.1 vs. uniprot
Match: A0A8B7NXZ1_HYAAZ (Sister chromatid cohesion protein DCC1 n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7NXZ1_HYAAZ)

HSP 1 Score: 80.5 bits (197), Expect = 2.340e-14
Identity = 60/197 (30.46%), Postives = 99/197 (50.25%), Query Frame = 1
Query:    7 LKFSESLDPGSLRLLEVSEELLSEIESGKSLMIKATADQDAVMCTGGCTYGMQFVETSNSVLLVPQALKPEDSGSTGDGEASXXXXXXXXXDVSEEKVAEIAGIVRGTYTLHEMPSRVWQLRELLEQTRDAETEKMSLR--RQRLFAWEDLRRVVQVSDLELWQGLQELGAIRVGKHWRVLTPSFFREAMNAVLEVV 591
            L+F  + +P    LL++  +L+  ++ G  L+++  +D  AV+CT   T+ ++  ETSNS++LVP  L PED  S G+                E    EI G+      +     R+ +LRELL +   A    + +    QR++   DL   VQ SD +L   L++L A+ +  HWR+L   +F  A ++VL V+
Sbjct:   32 LEFPAAYNPEKYLLLQLPNKLIDAVKQGDELILRGDSDDFAVLCTDNETFEVREAETSNSLVLVPSMLTPEDMKSIGNSR--------------ELLHKEIVGVHNKYLEVRPCLPRLGKLRELLSECPYAGPSHVPMDDDEQRMYDMTDLLDRVQSSDDQLRSALEDLPALFIDGHWRMLEFEYFFGATSSVLGVI 214          
BLAST of mRNA_M-pyrifera_M_contig68434.16472.1 vs. uniprot
Match: A0A6J1IFE0_CUCMA (sister chromatid cohesion protein DCC1 n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1IFE0_CUCMA)

HSP 1 Score: 79.7 bits (195), Expect = 4.420e-14
Identity = 57/186 (30.65%), Postives = 99/186 (53.23%), Query Frame = 1
Query:   40 LRLLEVSEELLSEIESGKSLMIKATADQDAVMCTGGCTYGMQFVETSNSVLLVPQALKPEDSGSTGDGEASXXXXXXXXXDVSEEKVAEIAGIVRGTYTLHEMPSRVWQLRELLEQTR-----DAETEKMSLRRQRLFAWEDLRRVVQVSDLELWQGLQELGAIRVGKHWRVLTPSFFREAMNAVL 582
            L LLEV E+LL E+   + + I+  A+++AV CT   TYG+++V TSNSVLL+P + + E   +  D + +           S ++V  +  +  G   L E+  R+ +L+ LL +       + E+E+M    ++++ W DL   VQ SD EL  GL+ L A+ +  +WR++   +    +  +L
Sbjct:   37 LVLLEVDEKLLEEVLHER-VSIRGQAEEEAVFCTKSKTYGIKYVGTSNSVLLIPPSGRSEYYENELDSQGND----------STKEVVPVIKLAPGIMELVEIAPRIDKLKLLLSENPYSLADEWESEEMDKCEKQMYNWNDLLDKVQASDDELKAGLRALSAVEIDGYWRLVDEKYMDSMLQMLL 211          
BLAST of mRNA_M-pyrifera_M_contig68434.16472.1 vs. uniprot
Match: A0A293LQY7_ORNER (Sister chromatid cohesion protein DCC1 (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293LQY7_ORNER)

HSP 1 Score: 74.7 bits (182), Expect = 2.490e-12
Identity = 56/195 (28.72%), Postives = 89/195 (45.64%), Query Frame = 1
Query:    7 LKFSESLDPGSLRLLEVSEELLSEIESGKSLMIKATADQDAVMCTGGCTYGMQFVETSNSVLLVPQALKPEDSGSTGDGEASXXXXXXXXXDVSEEKVAEIAGIVRGTYTLHEMPSRVWQLRELLEQTRDAETEKMSLRRQRLFAWEDLRRVVQVSDLELWQGLQELGAIRVGKHWRVLTPSFFREAMNAVLEVV 591
            L FS+  D   L L+EV +++L ++ESG  L  +   D  AV+CT  CTY ++  ETSNS+LLVP  + P + G+  D             D   E + ++  I      L +  SR+  L +LL +     TE         +   DL   VQ  + E+   L EL  ++V   +R+L   +    +N +   +
Sbjct:   26 LLFSDEED-SQLLLMEVDKDMLKDLESGDMLTFRGRDDDSAVLCTNKCTYEVREAETSNSLLLVPHLMLPNEMGAVDD-------------DNLTESMKQVPRIFHTYLELRQCSSRLRPLCDLLRRKPFKGTELEDDDLTDKYTLSDLLSAVQARECEILAALDELPVVKVNGFYRLLEVDYHFRVVNFIANYI 206          
BLAST of mRNA_M-pyrifera_M_contig68434.16472.1 vs. uniprot
Match: UPI001425AF77 (sister chromatid cohesion protein DCC1-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425AF77)

HSP 1 Score: 73.6 bits (179), Expect = 5.510e-12
Identity = 52/186 (27.96%), Postives = 98/186 (52.69%), Query Frame = 1
Query:   40 LRLLEVSEELLSEIESGKSLMIKATADQDAVMCTGGCTYGMQFVETSNSVLLVPQALKPEDSGSTGDGEASXXXXXXXXXDVSEEKVAEIAGIVRGTYTLHEMPSRVWQLRELLEQTRDAETEKMSLRR--QRLFAWEDLRRVVQVSDLELWQGLQELGAIRVGKHWRVLTPSFFREAMNAVLEVV 591
            ++L+EV+++LLS +++GK L+I+      AV+CT   TY ++  ET+N +LLVP  +    S S  D   S            E K  ++AG++   + L     ++ ++R LLE +      +   R    +L+  +DL  +VQ S+ E+++ L ++ A  +  HWR+L+  +    + ++L +V
Sbjct:    1 MKLMEVNDDLLSNLKAGKRLVIRGEKTDHAVLCTDNTTYDLKLAETTNGLLLVPDGVT---SDSFVDNTRSL-----------EHK--QVAGLIHTYFELKPTRPKLKKVRVLLEDSEYEGAVEEGAREITGKLYTTDDLLDIVQASEDEIFRELAKIQACTINGHWRLLSFEYKSRVIASILNLV 170          
BLAST of mRNA_M-pyrifera_M_contig68434.16472.1 vs. uniprot
Match: UPI000BA812FF (sister chromatid cohesion protein DCC1-like isoform X1 n=6 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA812FF)

HSP 1 Score: 73.2 bits (178), Expect = 6.890e-12
Identity = 55/188 (29.26%), Postives = 93/188 (49.47%), Query Frame = 1
Query:   40 LRLLEVSEELLSEIESGKSLMIKATADQDAVMCTGGCTYGMQFVETSNSVLLVPQALKPEDSGSTGDGEASXXXXXXXXXDVSEEKVAEIAGIVRGTYTLHEMPSRVWQLRELLEQT----RDAETEKMSLRRQRLFAWEDLRRVVQVSDLELWQGLQELGAIRVGKHWRVLTPSFFREAMNAVLEVV 591
            L+L+EV+ ++L++I  G+ ++I+      AV+CT   TY ++   TSNS+LL+P  + P D   T D +                   E+AGI      LH    RV +LR L+E+     ++ E + + ++    + +EDL  V+Q S  EL   L+EL A  +   WR+L   +     N ++ +V
Sbjct:   59 LKLMEVTPDILNQILEGERVIIRGDKSDPAVLCTDTQTYDIKEAGTSNSLLLLPSVVWP-DEAETNDKDDGITIASQ-----------EVAGIFHNYLELHLCRPRVQKLRYLMEENLYTGKEYEADNVDVK----YTFEDLLNVIQASPKELQTALRELQACCIDGFWRMLDFDYQFSVFNHIVNLV 230          
BLAST of mRNA_M-pyrifera_M_contig68434.16472.1 vs. uniprot
Match: UPI0018D06200 (sister chromatid cohesion protein DCC1 n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0018D06200)

HSP 1 Score: 73.2 bits (178), Expect = 9.680e-12
Identity = 59/209 (28.23%), Postives = 107/209 (51.20%), Query Frame = 1
Query:   22 SLDPGSLRLLEVSEELLSEIESGKSLMIKATADQDAVMCTGGCTYGMQFVETSNSVLLVPQALKPEDSGST---------GDGEASXXXXXXXXX------DVSEEKVAEIAGIVRGTYTLHEMPS---RVWQLRELLEQTRDAETE-KMSLRRQRLFAWEDLRRVVQVSDLELWQGLQELGAIRVGKHWRVLTPSFFREAMNAVLEVV 591
            SL   +LRL+++ + LL EIE+GK L+ K   +++ V+CT   TY ++  ETSNS+LLVP+ +   D+G           GD + S               D    +  +   IV   +T +E+     R+ +LR++LE TR    E + ++ + +L  +  L   +Q S  EL Q L+++ AI +  ++R+L   +    ++ +L+++
Sbjct:   39 SLHNDNLRLMQLDDYLLKEIEAGKELVFKGEREENVVLCTETKTYDVKEAETSNSLLLVPELMFATDTGHDETMKNNSMDGDSDTSFDKSNTSLNKSTDSDDGKPPRNIQHKDIVNTFFTYYELKQCKPRLNKLRKILEATRYRGPELEYAVDKSKLLDYNKLFHQIQASRAELTQELEKIQAIEIDGYYRLLEFDYEFRVLSYMLDLI 247          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68434.16472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0A0L4H9_CUCSA1.500e-1633.33Uncharacterized protein n=4 Tax=Benincaseae TaxID=... [more]
A0A6J1CZB2_MOMCH5.350e-1631.75sister chromatid cohesion protein DCC1 n=1 Tax=Mom... [more]
A0A1S2XMT3_CICAR7.510e-1633.16sister chromatid cohesion protein DCC1 n=1 Tax=Cic... [more]
UPI001ED868122.770e-1528.28sister chromatid cohesion protein DCC1 n=1 Tax=Isc... [more]
A0A8B7NXZ1_HYAAZ2.340e-1430.46Sister chromatid cohesion protein DCC1 n=1 Tax=Hya... [more]
A0A6J1IFE0_CUCMA4.420e-1430.65sister chromatid cohesion protein DCC1 n=3 Tax=Cuc... [more]
A0A293LQY7_ORNER2.490e-1228.72Sister chromatid cohesion protein DCC1 (Fragment) ... [more]
UPI001425AF775.510e-1227.96sister chromatid cohesion protein DCC1-like n=1 Ta... [more]
UPI000BA812FF6.890e-1229.26sister chromatid cohesion protein DCC1-like isofor... [more]
UPI0018D062009.680e-1228.23sister chromatid cohesion protein DCC1 n=1 Tax=Plu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68434contigM-pyrifera_M_contig68434:138..1232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score91.3
Seed ortholog evalue5.5e-16
Seed eggNOG ortholog3656.XP_008438251.1
KEGG koko:K11271
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Sister chromatid cohesion protein
EggNOG OGs37KPA@33090,3GE24@35493,4JJSI@91835,KOG0798@1,KOG0798@2759
COG Functional cat.D
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons3
Model size591
Cds size591
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68434.16472.1prot_M-pyrifera_M_contig68434.16472.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68434 138..1232 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816576.4407074-CDS-M-pyrifera_M_contig68434:137..2321622816576.4407074-CDS-M-pyrifera_M_contig68434:137..232Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68434 138..232 +
1692278056.6043737-CDS-M-pyrifera_M_contig68434:137..2321692278056.6043737-CDS-M-pyrifera_M_contig68434:137..232Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68434 138..232 +
1622816576.454131-CDS-M-pyrifera_M_contig68434:307..5971622816576.454131-CDS-M-pyrifera_M_contig68434:307..597Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68434 308..597 +
1692278056.615197-CDS-M-pyrifera_M_contig68434:307..5971692278056.615197-CDS-M-pyrifera_M_contig68434:307..597Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68434 308..597 +
1622816576.4688804-CDS-M-pyrifera_M_contig68434:1026..12321622816576.4688804-CDS-M-pyrifera_M_contig68434:1026..1232Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68434 1027..1232 +
1692278056.6241405-CDS-M-pyrifera_M_contig68434:1026..12321692278056.6241405-CDS-M-pyrifera_M_contig68434:1026..1232Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68434 1027..1232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68434.16472.1

>prot_M-pyrifera_M_contig68434.16472.1 ID=prot_M-pyrifera_M_contig68434.16472.1|Name=mRNA_M-pyrifera_M_contig68434.16472.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=197bp
MELKFSESLDPGSLRLLEVSEELLSEIESGKSLMIKATADQDAVMCTGGC
TYGMQFVETSNSVLLVPQALKPEDSGSTGDGEASGGGSGDGEGDVSEEKV
AEIAGIVRGTYTLHEMPSRVWQLRELLEQTRDAETEKMSLRRQRLFAWED
LRRVVQVSDLELWQGLQELGAIRVGKHWRVLTPSFFREAMNAVLEVV
back to top

mRNA from alignment at M-pyrifera_M_contig68434:138..1232+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68434.16472.1 ID=mRNA_M-pyrifera_M_contig68434.16472.1|Name=mRNA_M-pyrifera_M_contig68434.16472.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1095bp|location=Sequence derived from alignment at M-pyrifera_M_contig68434:138..1232+ (Macrocystis pyrifera P11B4 male)
ATGGAGCTAAAGTTTTCTGAATCGTTGGACCCTGGGTCATTACGCCTCTT GGAGGTGTCAGAGGAGTTGTTGAGTGAAATTGAGAGTGGAAAATCGTACG TAATATACCTCGAATGTGGCTAAATCGCATCCGGCCGTATTCATATTCTT TTGTTTTCGTTTGTTTGCAGATTGATGATCAAAGCGACTGCTGATCAAGA TGCTGTTATGTGCACTGGCGGCTGTACGTATGGAATGCAGTTTGTCGAAA CTTCCAATAGCGTGCTTTTAGTCCCTCAAGCATTGAAACCGGAGGATTCT GGATCTACTGGGGATGGTGAGGCTAGTGGAGGTGGGAGCGGGGATGGGGA GGGGGATGTGAGTGAGGAAAAGGTTGCAGAAATTGCTGGTATTGTCCGAG GTACGTACACCTTGCATGAAATGCCATCTCGTGTCTGGCAACTGCGTGAA TTACTCGAACGTGCTCCTTTGGACGCACCAGAACATGGATTAGATCCTCT TGCAGAGTTGGTGTGGGAAGAAGATAAGGAAGAGGAAGAAGGGGACGTAG GGGAGGAGAAGAAAGTTTCATCTACCACTTCTTCAACATTCAATGACTTT CTTCTCACTGCACCTGATGATCATGACACCCATGACACAAGCCATGACGA TTCTGGGGGTGCTGAATCTTCAACATCTGCTACTGTAGCATCTCCTCCAT CAGCATCAGAATCAGCAGCTTCAACATCTGCTTCCACAACTATCCCATCC TCTCCCCCTTCATCCTCATCAACATCATCATCTCCAGGTGTGTTTACTTC ACCTGGTGCATCAGGTAAAGTGGCTTCCTTCTCTTCTCTCTCCTCCCCTG TGCCTATTCGTGATGATGGAGCTCCGTTGCCTGTGAGAGAAACAAGAGAT GCGGAGACAGAAAAGATGTCGTTGCGACGTCAACGGTTGTTTGCTTGGGA AGACTTGCGGAGAGTGGTGCAAGTGAGTGATCTGGAATTGTGGCAAGGGT TGCAGGAGCTGGGAGCAATTCGTGTGGGGAAACATTGGAGAGTATTAACA CCATCCTTCTTTCGAGAAGCGATGAATGCAGTGCTCGAAGTTGTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig68434:138..1232+

>mRNA_M-pyrifera_M_contig68434.16472.1 ID=mRNA_M-pyrifera_M_contig68434.16472.1|Name=mRNA_M-pyrifera_M_contig68434.16472.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1182bp|location=Sequence derived from alignment at M-pyrifera_M_contig68434:138..1232+ (Macrocystis pyrifera P11B4 male)
ATGGAGCTAAAGTTTTCTGAATCGTTGGACCCTGGGTCATTACGCCTCTT
GGAGGTGTCAGAGGAGTTGTTGAGTGAAATTGAGAGTGGAAAATCATGGA
GCTAAAGTTTTCTGAATCGTTGGACCCTGGGTCATTACGCCTCTTGGAGG
TGTCAGAGGAGTTGTTGAGTGAAATTGAGAGTGGAAAATCATTGATGATC
AAAGCGACTGCTGATCAAGATGCTGTTATGTGCACTGGCGGCTGTACGTA
TGGAATGCAGTTTGTCGAAACTTCCAATAGCGTGCTTTTAGTCCCTCAAG
CATTGAAACCGGAGGATTCTGGATCTACTGGGGATGGTGAGGCTAGTGGA
GGTGGGAGCGGGGATGGGGAGGGGGATGTGAGTGAGGAAAAGGTTGCAGA
AATTGCTGGTATTGTCCGAGGTACGTACACCTTGCATGAAATGCCATCTC
GTGTCTGGCAACTGCGTGAATTACTCGAACATTGATGATCAAAGCGACTG
CTGATCAAGATGCTGTTATGTGCACTGGCGGCTGTACGTATGGAATGCAG
TTTGTCGAAACTTCCAATAGCGTGCTTTTAGTCCCTCAAGCATTGAAACC
GGAGGATTCTGGATCTACTGGGGATGGTGAGGCTAGTGGAGGTGGGAGCG
GGGATGGGGAGGGGGATGTGAGTGAGGAAAAGGTTGCAGAAATTGCTGGT
ATTGTCCGAGGTACGTACACCTTGCATGAAATGCCATCTCGTGTCTGGCA
ACTGCGTGAATTACTCGAACAAACAAGAGATGCGGAGACAGAAAAGATGT
CGTTGCGACGTCAACGGTTGTTTGCTTGGGAAGACTTGCGGAGAGTGGTG
CAAGTGAGTGATCTGGAATTGTGGCAAGGGTTGCAGGAGCTGGGAGCAAT
TCGTGTGGGGAAACATTGGAGAGTATTAACACCATCCTTCTTTCGAGAAG
CGATGAATGCAGTGCTCGAAGTTGTGAAACAAGAGATGCGGAGACAGAAA
AGATGTCGTTGCGACGTCAACGGTTGTTTGCTTGGGAAGACTTGCGGAGA
GTGGTGCAAGTGAGTGATCTGGAATTGTGGCAAGGGTTGCAGGAGCTGGG
AGCAATTCGTGTGGGGAAACATTGGAGAGTATTAACACCATCCTTCTTTC
GAGAAGCGATGAATGCAGTGCTCGAAGTTGTG
back to top