mRNA_M-pyrifera_M_contig68433.16471.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68433.16471.1
Unique NamemRNA_M-pyrifera_M_contig68433.16471.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig68433.16471.1 vs. uniprot
Match: A0A5A8CZ28_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CZ28_CAFRO)

HSP 1 Score: 449 bits (1156), Expect = 5.330e-145
Identity = 225/381 (59.06%), Postives = 292/381 (76.64%), Query Frame = 1
Query:   67 ERYEMQRLVASGVLPASA-----VMSDXXXXXXXGDAMTVDIVEREPPFLRGQTSATRELSPVRVVKNPDGSLARAAQAQAEFVKEKREVKAIRHKEMVEAAPRDLGQAWADPMASRADRHLAVDLAGLSMVKADEDEPEWKRKSIGTSVALGKTSKLSIREQRIGLPIYKMKDDFINAVRDNQVIVVLGETGSGKTTQMPQYLAEAGFTSKGIVACTQPRRVAAMSVAERVSEEVGCRVGEEVGYSIRFEDKTSPTTKIKFMTDGMLLREYLADRSLSRYSVIILDEAHERTINTDVLFGLMYRLLQKRRDLRVICTSATLDAEKFSSFFFDCPIFKIPGRMFPVRTYHATEPADDYVELAVRTAMKLHVTEPAGDILVF 1194
            E++ + +L+ SGVLPA         S         + + V++V+ E PFLRG      ++SPVRVVKNP+GSL RAA  Q+   KE++EVK ++ +EM++A P+D+   W DP+A+  D+ LA ++ G+    A  DE EWK K   T++A GK S LSIREQR GLPI K++D+FI AVR +QV+VV+GETGSGKTTQM QYLAEAGFT+KG++ CTQPRR+AA SVAERV+EEVGCR+G+EVG+SIRF D TSP T IK+MTDGMLLREYL D  L RYSVIILDEAHERTINTDVLFGL+  L+++R DLRVI TSATLD++KF+ ++FDCP+ +IPGR FPV T++ T+PADDY+ELA+ T +++HVT+PAGDIL+F
Sbjct:  328 EQFAVGQLIRSGVLPAEMYPSFNAESGVLDLEEEEEEVDVEVVDDEAPFLRGLGRGAADVSPVRVVKNPEGSLQRAAMTQSALSKERKEVKQLQQREMLDAIPKDMSSGWLDPLATTGDKLLAEEVRGIGGAAAGADEGEWKAKQRSTAIARGKISTLSIREQREGLPIRKLRDEFIAAVRAHQVLVVVGETGSGKTTQMTQYLAEAGFTAKGMIGCTQPRRIAASSVAERVAEEVGCRLGQEVGFSIRFNDVTSPETVIKYMTDGMLLREYLMDDELKRYSVIILDEAHERTINTDVLFGLLKGLVKRRPDLRVIATSATLDSDKFAEYWFDCPVMRIPGRTFPVTTHYVTQPADDYLELAITTVLRIHVTKPAGDILLF 708          
BLAST of mRNA_M-pyrifera_M_contig68433.16471.1 vs. uniprot
Match: A0A835Q324_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835Q324_VANPL)

HSP 1 Score: 427 bits (1097), Expect = 5.940e-141
Identity = 218/395 (55.19%), Postives = 295/395 (74.68%), Query Frame = 1
Query:   31 SGGRARKELSTQERYEMQRLVASGVL-----PASAVMSDXXXXXXXG--DAMTVDIVEREPPFLRGQTSATRELSPVRVVKNPDGSLARAAQAQAEFVKEKREVKAIRHKEMVEAAPRDLGQAWADPMASRADRHLAVDLAGLSMVKADEDEPEWKRKSIGTSVALGKTSKLSIREQRIGLPIYKMKDDFINAVRDNQVIVVLGETGSGKTTQMPQYLAEAGFTSKGIVACTQPRRVAAMSVAERVSEEVGCRVGEEVGYSIRFEDKTSPTTKIKFMTDGMLLREYLADRSLSRYSVIILDEAHERTINTDVLFGLMYRLLQKRRDLRVICTSATLDAEKFSSFFFDCPIFKIPGRMFPVRTYHATEPADDYVELAVRTAMKLHVTEPAGDILVF 1194
            S  R  K +S+ E++E ++L+ASGVL     P      D       G  + + +++ E EP FL+GQ+  + ++SPV++ KNP+GSL+RAA  Q+  +KE+REV+  + + M+++ P+DL + W DPM    +RHLA +L G+ +  +  D PEWK+ + G ++  G+ SKLSI+EQR  LPIYK+K + I AV DNQV+VV+GETGSGKTTQ+ QYLAEAG+T+KG + CTQPRRVAAMSVA+RV+EE GCR+GEEVGY+IRFED T P T IK+MTDGMLLRE L D +LS+YSVI+LDEAHERTI+TDVLFGL+ +L+++R DLR+I TSATLDAEKFS +FF+C IF IPGR FPV   +A +P  DY++ A+ T +++HVTEP GDIL+F
Sbjct:   54 SSRRPLKRMSSPEKWEAKQLIASGVLDVREYPMFDDEGDGMLYQEEGAEEELEIELNEDEPAFLQGQSRFSIDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGL--SAYDMPEWKKDAYGKALTFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPETVIKYMTDGMLLREILVDENLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRLDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYAKQPESDYLDAALMTVLQIHVTEPEGDILLF 446          
BLAST of mRNA_M-pyrifera_M_contig68433.16471.1 vs. uniprot
Match: A0A5B8MEZ3_9CHLO (RNA helicase n=4 Tax=Chloropicon TaxID=2302914 RepID=A0A5B8MEZ3_9CHLO)

HSP 1 Score: 437 bits (1123), Expect = 3.110e-140
Identity = 228/397 (57.43%), Postives = 295/397 (74.31%), Query Frame = 1
Query:   28 LSGGRARKELSTQERYEMQRLVASGVLPASAVMS-DXXXXXXXGDA------MTVDIVEREPPFLRGQTSATR-ELSPVRVVKNPDGSLARAAQAQAEFVKEKREVKAIRHKEMVEAAPRDLGQAWADPMASRADRHLAVDLAGLSMVKADEDEPEWKRKSIGTSVALGKTSKLSIREQRIGLPIYKMKDDFINAVRDNQVIVVLGETGSGKTTQMPQYLAEAGFTSKGIVACTQPRRVAAMSVAERVSEEVGCRVGEEVGYSIRFEDKTSPTTKIKFMTDGMLLREYLADRSLSRYSVIILDEAHERTINTDVLFGLMYRLLQKRRDLRVICTSATLDAEKFSSFFFDCPIFKIPGRMFPVRTYHATEPADDYVELAVRTAMKLHVTEPAGDILVF 1194
            L   R RK +S+ ER+E ++L+ASG+LP S   + D        +       + VD+ E EPPFL+GQT+A+  ++SP+++V+ PDGSL RAA  Q+   KE+RE+K  + +  +EA P+DL + W DPMA+  DR LA ++ G  +  A  D PEWK+K+ G + + G+ S LSI EQR GLPIYK++D  I AV DNQ +VV+GETGSGKTTQM QYLAEAG+TS+G + CTQPRRVAAMSVA+RVSEE GCR+GEEVGY+IRFED+TS  T IK+MTDGMLLRE L   +L  YSVIILDEAHERTINTDVLFGL+  L+Q+R+D+++I TSATLDAEKFSS+FF+CPIF IPGRMFPV   +  +P  DY++  + T M++H+TEP GDILVF
Sbjct:  304 LFNSRRRKRMSSPERWETKQLIASGILPVSEYPNFDEDGPGLLNEEEGAEEEIEVDLNEDEPPFLQGQTNASGVDVSPIKIVRVPDGSLQRAAMTQSALAKERRELKEQQQRSEMEAVPKDLSRPWEDPMAA-GDRQLAAEVKGTGL--AARDVPEWKQKAFGKATSYGQRSSLSIAEQRKGLPIYKLRDQLIQAVNDNQFMVVIGETGSGKTTQMTQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCRLGEEVGYAIRFEDRTSKDTVIKYMTDGMLLREVLLKETLHDYSVIILDEAHERTINTDVLFGLLKNLVQQRKDIKIIITSATLDAEKFSSYFFNCPIFTIPGRMFPVEILYTKDPEADYLDACLVTVMQIHLTEPEGDILVF 697          
BLAST of mRNA_M-pyrifera_M_contig68433.16471.1 vs. uniprot
Match: A0A314YWR6_PRUYE (RNA helicase n=4 Tax=Prunus TaxID=3754 RepID=A0A314YWR6_PRUYE)

HSP 1 Score: 418 bits (1075), Expect = 5.410e-140
Identity = 211/392 (53.83%), Postives = 292/392 (74.49%), Query Frame = 1
Query:   40 RARKELSTQERYEMQRLVASGVL-----PASAVMSDXXXXXXXG--DAMTVDIVEREPPFLRGQTSATRELSPVRVVKNPDGSLARAAQAQAEFVKEKREVKAIRHKEMVEAAPRDLGQAWADPMASRADRHLAVDLAGLSMVKADEDEPEWKRKSIGTSVALGKTSKLSIREQRIGLPIYKMKDDFINAVRDNQVIVVLGETGSGKTTQMPQYLAEAGFTSKGIVACTQPRRVAAMSVAERVSEEVGCRVGEEVGYSIRFEDKTSPTTKIKFMTDGMLLREYLADRSLSRYSVIILDEAHERTINTDVLFGLMYRLLQKRRDLRVICTSATLDAEKFSSFFFDCPIFKIPGRMFPVRTYHATEPADDYVELAVRTAMKLHVTEPAGDILVF 1194
            R  K +S+ E++E ++L+ASGVL     P     +D       G  + + +++ E EP FL GQ+  + ++SPV++ KNP+GSL RAA  Q+  +KE+REV+  + + M+++ P+DL + W DPM    +RHLA +L G+ +  +  D PEWK+ + G +++ G+ SKLSI+EQR  LPIYK+K + I AV +NQV+VV+GETGSGKTTQ+ QYLAEAG+T+ G + CTQPRRVAAMSVA+RV+EE GCR+GEEVGY+IRFED T P T IK+MTDGMLLRE L D +LS+YSV++LDEAHERTI+TDVLFGL+ +L+++R DLR+I TSATLDAEKFS +FF+C IF IPGR FPV   +  +P  DY++ ++ T +++H+TEP GDIL+F
Sbjct:  114 RPLKRMSSPEKWEAKQLIASGVLGVTEYPMYDEETDGMLYQEEGAEEELEIELNEDEPAFLNGQSRYSVDMSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGL--SAYDMPEWKKDAFGKTISFGQRSKLSIQEQRQSLPIYKLKKELIAAVHENQVLVVIGETGSGKTTQVTQYLAEAGYTTMGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVVMLDEAHERTIHTDVLFGLLKKLVKRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLF 503          
BLAST of mRNA_M-pyrifera_M_contig68433.16471.1 vs. uniprot
Match: A0A1D6H4I9_MAIZE (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6H4I9_MAIZE)

HSP 1 Score: 425 bits (1092), Expect = 2.800e-139
Identity = 216/396 (54.55%), Postives = 292/396 (73.74%), Query Frame = 1
Query:   40 RARKELSTQERYEMQRLVASGVLPASAVMSDXXXXXXXGDAMT-----------VDIVEREPPFLRGQTSATRELSPVRVVKNPDGSLARAAQAQAEFVKEKREVKAIRHKEMVEAAPRDLGQAWADPMASRADRHLAVDLAGLSMVKADEDEPEWKRKSIGTSVALGKTSKLSIREQRIGLPIYKMKDDFINAVRDNQVIVVLGETGSGKTTQMPQYLAEAGFTSKGIVACTQPRRVAAMSVAERVSEEVGCRVGEEVGYSIRFEDKTSPTTKIKFMTDGMLLREYLADRSLSRYSVIILDEAHERTINTDVLFGLMYRLLQKRRDLRVICTSATLDAEKFSSFFFDCPIFKIPGRMFPVRTYHATEPADDYVELAVRTAMKLHVTEPAGDILVF 1194
            R  K +S+ ER+E ++L+ASGVL     + D       GD M            +++ E EP FL+GQ+  + ++SPV++ KNP+GSL+RAA  Q   +KE+REV+    + M+++ P+DL + W DPM    +RHLA +L G+ +  +  D PEWK+++ G ++  G+ SKLSI+EQR  LPIYK+K + I AV DNQV+VV+GETGSGKTTQ+ QYLAEAG+T++G + CTQPRRVAAMSVA+RV+EE GCR+GEEVGY+IRFED T P T IK+MTDGMLLRE L D +LS+YSVI+LDEAHERTI+TDVLFGL+ +L+++R D+R+I TSATLDAEKFS +FF+C IF IPGR FPV   +  +P  DY++ A+ T +++H+TEP GDILVF
Sbjct:   60 RPLKRMSSPERWEAKQLIASGVLD----VRDYPMFDEDGDGMMYQEEGAEEELEIELNEDEPAFLQGQSRFSIDMSPVKIFKNPEGSLSRAAALQTALIKERREVREQEQRAMLDSIPKDLNRPWEDPMPDTGERHLAQELRGVGL--SAYDMPEWKKEAYGKALTFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENLSQYSVIMLDEAHERTIHTDVLFGLLKQLIKRRSDMRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQIHLTEPEGDILVF 449          
BLAST of mRNA_M-pyrifera_M_contig68433.16471.1 vs. uniprot
Match: A0A5K0XGV8_9MAGN (RNA helicase (Fragment) n=3 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0XGV8_9MAGN)

HSP 1 Score: 429 bits (1104), Expect = 3.690e-139
Identity = 221/407 (54.30%), Postives = 299/407 (73.46%), Query Frame = 1
Query:    1 SGVSLTSSVLSGGRAR--KELSTQERYEMQRLVASGVL-----PASAVMSDXXXXXXXG--DAMTVDIVEREPPFLRGQTSATRELSPVRVVKNPDGSLARAAQAQAEFVKEKREVKAIRHKEMVEAAPRDLGQAWADPMASRADRHLAVDLAGLSMVKADEDEPEWKRKSIGTSVALGKTSKLSIREQRIGLPIYKMKDDFINAVRDNQVIVVLGETGSGKTTQMPQYLAEAGFTSKGIVACTQPRRVAAMSVAERVSEEVGCRVGEEVGYSIRFEDKTSPTTKIKFMTDGMLLREYLADRSLSRYSVIILDEAHERTINTDVLFGLMYRLLQKRRDLRVICTSATLDAEKFSSFFFDCPIFKIPGRMFPVRTYHATEPADDYVELAVRTAMKLHVTEPAGDILVF 1194
            SG+ +     SG   R  K +S+ ER+E ++L+ASGVL     P      D       G  + + +++ E EPPFL+GQT  + ++SPV++VKNPDGSL RAA  Q+   KE+RE++  + + M+++ P+DL + W DPM    +RHLA +L G+ +  +  D PEWK+ + G +   G+ SKLSI+EQR  LPI+K+K + + AV DNQV+VV+GETGSGKTTQ+ QYLAEAG+T++G + CTQPRRVAAMSVA+RV+EE GCR+GEEVGY+IRFED T P T IK+MTDGMLLRE L D SLS+YSVI+LDEAHERTI+TDVLFGL+ +L+++R+DLR+I TSATLDAEKFS +FF+C IF IPGR FPV   +  +P  DY++ A+ T M++H+TEP GD+L+F
Sbjct:  245 SGIRIVDEDSSGPSRRPLKRMSSPERWEAKQLIASGVLDVREYPMYDDDGDGMMYQEEGAEEELEIELNEDEPPFLQGQTRYSIDVSPVKIVKNPDGSLQRAAMTQSALAKERRELREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGL--SAYDMPEWKKDAFGKAPTFGQRSKLSIQEQRQSLPIFKLKKELVQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPETVIKYMTDGMLLREILVDESLSQYSVIMLDEAHERTIHTDVLFGLLKQLIKRRKDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVMQIHLTEPEGDVLLF 649          
BLAST of mRNA_M-pyrifera_M_contig68433.16471.1 vs. uniprot
Match: A0A444XHK5_ARAHY (RNA helicase n=1 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444XHK5_ARAHY)

HSP 1 Score: 428 bits (1100), Expect = 4.070e-139
Identity = 216/394 (54.82%), Postives = 294/394 (74.62%), Query Frame = 1
Query:   34 GGRARKELSTQERYEMQRLVASGVLPASAVMS-----DXXXXXXXG--DAMTVDIVEREPPFLRGQTSATRELSPVRVVKNPDGSLARAAQAQAEFVKEKREVKAIRHKEMVEAAPRDLGQAWADPMASRADRHLAVDLAGLSMVKADEDEPEWKRKSIGTSVALGKTSKLSIREQRIGLPIYKMKDDFINAVRDNQVIVVLGETGSGKTTQMPQYLAEAGFTSKGIVACTQPRRVAAMSVAERVSEEVGCRVGEEVGYSIRFEDKTSPTTKIKFMTDGMLLREYLADRSLSRYSVIILDEAHERTINTDVLFGLMYRLLQKRRDLRVICTSATLDAEKFSSFFFDCPIFKIPGRMFPVRTYHATEPADDYVELAVRTAMKLHVTEPAGDILVF 1194
            GG   K +S+ ER+E ++L+ASGVL  S   +     D       G  + + +++ E EP FL+GQ+  + ++SPV++ KNP+GSL RAA  Q+  +KE+REV+  + + M+++ P+DL + W DPM    +RHLA +L G+ +  +  D PEWK+ + G ++  G+ SKLSI+EQR  LPIYK+K + I AV DNQV+VV+GETGSGKTTQ+ QYLAEAG+T++G + CTQPRRVAAMSVA+RV+EE GCR+GEEVGY+IRFED T P T IK+MTDGMLLRE L D +LS+YSVI+LDEAHERTI+TDVLFGL+ +L+Q+R +LR+I TSATLDAEKFS +FF+C IF IPGR FPV   +  +P  DY++ A+ T +++H+TEP GDIL+F
Sbjct:   75 GGSKGKRMSSPERWEAKQLIASGVLSVSEYPTYDEEGDGLMYQEEGAEEELEIELNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPESGERHLAQELRGVGL--SAYDMPEWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENLSQYSVIMLDEAHERTIHTDVLFGLLKKLVQRRPELRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQIHLTEPEGDILLF 466          
BLAST of mRNA_M-pyrifera_M_contig68433.16471.1 vs. uniprot
Match: A0A2G9GXQ4_9LAMI (RNA helicase n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9GXQ4_9LAMI)

HSP 1 Score: 416 bits (1068), Expect = 4.780e-139
Identity = 213/395 (53.92%), Postives = 291/395 (73.67%), Query Frame = 1
Query:   40 RARKELSTQERYEMQRLVASGVLPASAVMSDXXXXXXXGDAMT-----------VDIVEREPPFLRGQTSATRELSPVRVVKNPDGSLARAAQAQAEFVKEKREVKAIRHKEMVEAAPRDLGQAWADPMASRADRHLAVDLAGLSMVKADEDEPEWKRKSIGTSVALGKTSKLSIREQRIGLPIYKMKDDFINAVRDNQVIVVLGETGSGKTTQMPQYLAEAGFTSKGIVACTQPRRVAAMSVAERVSEEVGCRVGEEVGYSIRFEDKTSPTTKIKFMTDGMLLREYLADRSLSRYSVIILDEAHERTINTDVLFGLMYRLLQKRRDLRVICTSATLDAEKFSSFFFDCPIFKIPGRMFPVRTYHATEPADDYVELAVRTAMKLHVTEPAGDILV 1191
            R  K +S+ E++E ++L+ASGVL A     +       GD +            +++ E EP FL+GQ+  + ++SPV++ KNP+GSL+RAA  Q+  +KE+REV+  + + M+++ P+DL + W DPM    +RHLA +L G+ +  +  D PEWK+ + G ++  G+ SKLSI+EQR  LPIYK+K + + AV DNQV+VV+GETGSGKTTQ+ QYLAEAG+T+KG + CTQPRRVAAMSVA+RV+EE GCR+GEEVGY+IRFED TSP T IK+MTDGMLLRE L D +LS+YSVI+LDEAHERTI+TDVLFGL+ +L+++R DLR+I TSATLDAEKFS +FF+C IF IPGR FPV   +A +P  DY++ A+ T +++H+TEP    LV
Sbjct:  116 RPLKRMSSPEKWEAKQLIASGVLSAK----EYPMFDEEGDGLLYQEEVAEEELEIELNEDEPAFLQGQSRYSVDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGL--SAYDMPEWKKDAYGKALTFGQRSKLSIQEQRQSLPIYKLKKELVQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTAKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTSPETVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYAKQPESDYLDAALITVLQIHLTEPEVPYLV 504          
BLAST of mRNA_M-pyrifera_M_contig68433.16471.1 vs. uniprot
Match: A0A444XIE2_ARAHY (RNA helicase n=1 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444XIE2_ARAHY)

HSP 1 Score: 426 bits (1094), Expect = 7.310e-139
Identity = 215/392 (54.85%), Postives = 293/392 (74.74%), Query Frame = 1
Query:   40 RARKELSTQERYEMQRLVASGVLPASAVMS-----DXXXXXXXG--DAMTVDIVEREPPFLRGQTSATRELSPVRVVKNPDGSLARAAQAQAEFVKEKREVKAIRHKEMVEAAPRDLGQAWADPMASRADRHLAVDLAGLSMVKADEDEPEWKRKSIGTSVALGKTSKLSIREQRIGLPIYKMKDDFINAVRDNQVIVVLGETGSGKTTQMPQYLAEAGFTSKGIVACTQPRRVAAMSVAERVSEEVGCRVGEEVGYSIRFEDKTSPTTKIKFMTDGMLLREYLADRSLSRYSVIILDEAHERTINTDVLFGLMYRLLQKRRDLRVICTSATLDAEKFSSFFFDCPIFKIPGRMFPVRTYHATEPADDYVELAVRTAMKLHVTEPAGDILVF 1194
            R  K +S+ ER+E ++L+ASGVL  S   +     D       G  + + +++ E EP FL+GQ+  + ++SPV++ KNP+GSL RAA  Q+  +KE+REV+  + + M+++ P+DL + W DPM    +RHLA +L G+ +  +  D PEWK+ + G ++  G+ SKLSI+EQR  LPIYK+K + I AV DNQV+VV+GETGSGKTTQ+ QYLAEAG+T++G + CTQPRRVAAMSVA+RV+EE GCR+GEEVGY+IRFED T P T IK+MTDGMLLRE L D +LS+YSVI+LDEAHERTI+TDVLFGL+ +L+Q+R +LR+I TSATLDAEKFS +FF+C IF IPGR FPV   +  +P  DY++ A+ T +++H+TEP GDIL+F
Sbjct:   76 RPLKRMSSPERWEAKQLIASGVLSVSEYPTYDEEGDGLMYQEEGAEEELEIELNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPESGERHLAQELRGVGL--SAYDMPEWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENLSQYSVIMLDEAHERTIHTDVLFGLLKKLVQRRPELRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQIHLTEPEGDILLF 465          
BLAST of mRNA_M-pyrifera_M_contig68433.16471.1 vs. uniprot
Match: UPI0012638CE1 (probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI0012638CE1)

HSP 1 Score: 416 bits (1070), Expect = 1.120e-138
Identity = 209/389 (53.73%), Postives = 291/389 (74.81%), Query Frame = 1
Query:   49 KELSTQERYEMQRLVASGVLPASA-VMSDXXXXXXXGDA------MTVDIVEREPPFLRGQTSATRELSPVRVVKNPDGSLARAAQAQAEFVKEKREVKAIRHKEMVEAAPRDLGQAWADPMASRADRHLAVDLAGLSMVKADEDEPEWKRKSIGTSVALGKTSKLSIREQRIGLPIYKMKDDFINAVRDNQVIVVLGETGSGKTTQMPQYLAEAGFTSKGIVACTQPRRVAAMSVAERVSEEVGCRVGEEVGYSIRFEDKTSPTTKIKFMTDGMLLREYLADRSLSRYSVIILDEAHERTINTDVLFGLMYRLLQKRRDLRVICTSATLDAEKFSSFFFDCPIFKIPGRMFPVRTYHATEPADDYVELAVRTAMKLHVTEPAGDILVF 1194
            K +S+ E++E ++L+ASGVL  +   M D        +       + +++ E EP FL G +  + ++SPV++ KNP+GSL+R+A  Q+  +KE+RE++  + K M+++ P+DL +AW DP+    DRHLA +L G+ +  +  + PEWK+ S G ++  G+ SKLSI+EQR  LPIYK+  + I AV DNQV+VV+GETGSGKTTQ+PQYLAEAG+T+KG + CTQPRRVAA SVA+RV+EE GCR+GE+VGY+IRFED T   T IK+MTDGMLL+E L D +LS+YSVI+LDEAHERTINTDVLFGL+ +L+++R DLR+I TSATLDAEKFS +FF+C IF IPGR FPV  +++ +P  DY++ A+ T +++H+TEP GDIL+F
Sbjct:  117 KRMSSLEKWEKKQLIASGVLAENEYTMYDEEGDGLASEEESAEEELEIELNEDEPAFLNGHSKYSVDISPVKIFKNPEGSLSRSAALQSALIKERRELRGQQQKTMLDSIPKDLNRAWEDPIPETGDRHLADELRGVGL--SASNIPEWKKDSYGKALTFGQRSKLSIQEQRKSLPIYKLNKELIQAVHDNQVLVVIGETGSGKTTQVPQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEDVGYAIRFEDCTGADTVIKYMTDGMLLKEILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEIFYSKQPESDYLDAALITVLEIHLTEPEGDILLF 503          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68433.16471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CZ28_CAFRO5.330e-14559.06Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A835Q324_VANPL5.940e-14155.19Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
A0A5B8MEZ3_9CHLO3.110e-14057.43RNA helicase n=4 Tax=Chloropicon TaxID=2302914 Rep... [more]
A0A314YWR6_PRUYE5.410e-14053.83RNA helicase n=4 Tax=Prunus TaxID=3754 RepID=A0A31... [more]
A0A1D6H4I9_MAIZE2.800e-13954.55Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
A0A5K0XGV8_9MAGN3.690e-13954.30RNA helicase (Fragment) n=3 Tax=Nymphaea colorata ... [more]
A0A444XHK5_ARAHY4.070e-13954.82RNA helicase n=1 Tax=Arachis hypogaea TaxID=3818 R... [more]
A0A2G9GXQ4_9LAMI4.780e-13953.92RNA helicase n=1 Tax=Handroanthus impetiginosus Ta... [more]
A0A444XIE2_ARAHY7.310e-13954.85RNA helicase n=1 Tax=Arachis hypogaea TaxID=3818 R... [more]
UPI0012638CE11.120e-13853.73probable pre-mRNA-splicing factor ATP-dependent RN... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68433contigM-pyrifera_M_contig68433:3..1196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score431.8
Seed ortholog evalue3.5e-118
Seed eggNOG ortholog29730.Gorai.009G117300.1
KEGG koko:K12818
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005737,GO:0005739,GO:0005829,GO:0005911,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009506,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030054,GO:0032991,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0055044,GO:0070035,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.Pre-mRNA-splicing factor ATP-dependent RNA
EggNOG OGs37PGP@33090,3GEAW@35493,COG1643@1,KOG0922@2759
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-13_002220.1
EC3.6.4.13
COG Functional cat.A
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041
Exons1
Model size1194
Cds size1194
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816576.408581-CDS-M-pyrifera_M_contig68433:2..11961622816576.408581-CDS-M-pyrifera_M_contig68433:2..1196Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68433 3..1196 -
1692278056.589919-CDS-M-pyrifera_M_contig68433:2..11961692278056.589919-CDS-M-pyrifera_M_contig68433:2..1196Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68433 3..1196 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68433.16471.1prot_M-pyrifera_M_contig68433.16471.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68433 3..1196 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68433.16471.1

>prot_M-pyrifera_M_contig68433.16471.1 ID=prot_M-pyrifera_M_contig68433.16471.1|Name=mRNA_M-pyrifera_M_contig68433.16471.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=398bp
SGVSLTSSVLSGGRARKELSTQERYEMQRLVASGVLPASAVMSDDEEEEG
GGDAMTVDIVEREPPFLRGQTSATRELSPVRVVKNPDGSLARAAQAQAEF
VKEKREVKAIRHKEMVEAAPRDLGQAWADPMASRADRHLAVDLAGLSMVK
ADEDEPEWKRKSIGTSVALGKTSKLSIREQRIGLPIYKMKDDFINAVRDN
QVIVVLGETGSGKTTQMPQYLAEAGFTSKGIVACTQPRRVAAMSVAERVS
EEVGCRVGEEVGYSIRFEDKTSPTTKIKFMTDGMLLREYLADRSLSRYSV
IILDEAHERTINTDVLFGLMYRLLQKRRDLRVICTSATLDAEKFSSFFFD
CPIFKIPGRMFPVRTYHATEPADDYVELAVRTAMKLHVTEPAGDILVF
back to top

mRNA from alignment at M-pyrifera_M_contig68433:3..1196-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68433.16471.1 ID=mRNA_M-pyrifera_M_contig68433.16471.1|Name=mRNA_M-pyrifera_M_contig68433.16471.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at M-pyrifera_M_contig68433:3..1196- (Macrocystis pyrifera P11B4 male)
TCTGGGGTTAGTTTGACTTCATCAGTATTGTCTGGTGGCCGTGCACGCAA GGAACTCTCCACGCAGGAGCGATATGAAATGCAGCGACTTGTTGCTTCTG GTGTTTTGCCTGCAAGTGCAGTTATGTCAGATGACGAGGAGGAAGAAGGC GGTGGAGATGCAATGACTGTGGATATTGTTGAGCGAGAACCTCCTTTCCT CCGAGGACAAACATCTGCGACCCGTGAATTGAGTCCTGTTCGTGTTGTGA AGAATCCAGACGGGAGTTTGGCCAGAGCAGCACAAGCACAGGCAGAATTT GTGAAAGAAAAGCGTGAAGTCAAAGCCATTCGACACAAGGAAATGGTGGA AGCAGCACCTCGAGACCTCGGTCAAGCATGGGCAGATCCAATGGCTAGTC GTGCGGACCGCCACTTGGCTGTAGACTTGGCTGGATTGAGCATGGTAAAG GCAGATGAGGATGAACCAGAGTGGAAGCGGAAGAGTATTGGAACAAGTGT GGCATTGGGGAAAACGAGCAAATTGAGCATTCGGGAGCAGAGAATTGGGC TTCCAATCTACAAGATGAAGGACGACTTTATCAATGCTGTGCGAGACAAC CAAGTGATTGTGGTGTTGGGTGAAACAGGATCCGGAAAGACAACACAGAT GCCACAATATTTGGCAGAAGCTGGGTTTACATCGAAAGGAATTGTTGCAT GTACGCAACCACGACGTGTTGCAGCAATGAGTGTCGCAGAAAGAGTGTCG GAGGAGGTGGGATGTAGAGTTGGGGAAGAAGTGGGATATAGCATTCGGTT TGAAGACAAGACGTCTCCAACAACCAAAATCAAGTTTATGACGGATGGAA TGCTGTTGCGTGAATACCTCGCCGACCGCTCCTTGTCTCGCTACTCTGTA ATCATTTTGGATGAAGCTCACGAACGCACCATCAACACTGACGTGTTGTT TGGACTGATGTATCGGTTGTTGCAGAAACGGCGTGATTTACGTGTGATTT GTACTTCTGCAACTTTGGATGCAGAAAAGTTTTCGTCCTTCTTCTTTGAC TGCCCCATTTTCAAGATCCCAGGTCGAATGTTTCCGGTGCGAACCTACCA CGCTACGGAGCCAGCTGATGACTATGTAGAATTGGCAGTACGAACAGCGA TGAAGCTGCATGTTACTGAACCTGCTGGGGATATTTTGGTCTTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig68433:3..1196-

>mRNA_M-pyrifera_M_contig68433.16471.1 ID=mRNA_M-pyrifera_M_contig68433.16471.1|Name=mRNA_M-pyrifera_M_contig68433.16471.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2388bp|location=Sequence derived from alignment at M-pyrifera_M_contig68433:3..1196- (Macrocystis pyrifera P11B4 male)
TCTGGGGTTAGTTTGACTTCATCAGTATTGTCTGGTGGCCGTGCACGCAA
GGAACTCTCCACGCAGGAGCGATATGAAATGCAGCGACTTGTTGCTTCTG
GTGTTTTGCCTGCAAGTGCAGTTATGTCAGATGACGAGGAGGAAGAAGGC
GGTGGAGATGCAATGACTGTGGATATTGTTGAGCGAGAACCTCCTTTCCT
CCGAGGACAAACATCTGCGACCCGTGAATTGAGTCCTGTTCGTGTTGTGA
AGAATCCAGACGGGAGTTTGGCCAGAGCAGCACAAGCACAGGCAGAATTT
GTGAAAGAAAAGCGTGAAGTCAAAGCCATTCGACACAAGGAAATGGTGGA
AGCAGCACCTCGAGACCTCGGTCAAGCATGGGCAGATCCAATGGCTAGTC
GTGCGGACCGCCACTTGGCTGTAGACTTGGCTGGATTGAGCATGGTAAAG
GCAGATGAGGATGAACCAGAGTGGAAGCGGAAGAGTATTGGAACAAGTGT
GGCATTGGGGAAAACGAGCAAATTGAGCATTCGGGAGCAGAGAATTGGGC
TTCCAATCTACAAGATGAAGGACGACTTTATCAATGCTGTGCGAGACAAC
CAAGTGATTGTGGTGTTGGGTGAAACAGGATCCGGAAAGACAACACAGAT
GCCACAATATTTGGCAGAAGCTGGGTTTACATCGAAAGGAATTGTTGCAT
GTACGCAACCACGACGTGTTGCAGCAATGAGTGTCGCAGAAAGAGTGTCG
GAGGAGGTGGGATGTAGAGTTGGGGAAGAAGTGGGATATAGCATTCGGTT
TGAAGACAAGACGTCTCCAACAACCAAAATCAAGTTTATGACGGATGGAA
TGCTGTTGCGTGAATACCTCGCCGACCGCTCCTTGTCTCGCTACTCTGTA
ATCATTTTGGATGAAGCTCACGAACGCACCATCAACACTGACGTGTTGTT
TGGACTGATGTATCGGTTGTTGCAGAAACGGCGTGATTTACGTGTGATTT
GTACTTCTGCAACTTTGGATGCAGAAAAGTTTTCGTCCTTCTTCTTTGAC
TGCCCCATTTTCAAGATCCCAGGTCGAATGTTTCCGGTGCGAACCTACCA
CGCTACGGAGCCAGCTGATGACTATGTAGAATTGGCAGTACGAACAGCGA
TGAAGCTGCATGTTACTGAACCTGCTGGGGATATTTTGGTCTTCTCTGGG
GTTAGTTTGACTTCATCAGTATTGTCTGGTGGCCGTGCACGCAAGGAACT
CTCCACGCAGGAGCGATATGAAATGCAGCGACTTGTTGCTTCTGGTGTTT
TGCCTGCAAGTGCAGTTATGTCAGATGACGAGGAGGAAGAAGGCGGTGGA
GATGCAATGACTGTGGATATTGTTGAGCGAGAACCTCCTTTCCTCCGAGG
ACAAACATCTGCGACCCGTGAATTGAGTCCTGTTCGTGTTGTGAAGAATC
CAGACGGGAGTTTGGCCAGAGCAGCACAAGCACAGGCAGAATTTGTGAAA
GAAAAGCGTGAAGTCAAAGCCATTCGACACAAGGAAATGGTGGAAGCAGC
ACCTCGAGACCTCGGTCAAGCATGGGCAGATCCAATGGCTAGTCGTGCGG
ACCGCCACTTGGCTGTAGACTTGGCTGGATTGAGCATGGTAAAGGCAGAT
GAGGATGAACCAGAGTGGAAGCGGAAGAGTATTGGAACAAGTGTGGCATT
GGGGAAAACGAGCAAATTGAGCATTCGGGAGCAGAGAATTGGGCTTCCAA
TCTACAAGATGAAGGACGACTTTATCAATGCTGTGCGAGACAACCAAGTG
ATTGTGGTGTTGGGTGAAACAGGATCCGGAAAGACAACACAGATGCCACA
ATATTTGGCAGAAGCTGGGTTTACATCGAAAGGAATTGTTGCATGTACGC
AACCACGACGTGTTGCAGCAATGAGTGTCGCAGAAAGAGTGTCGGAGGAG
GTGGGATGTAGAGTTGGGGAAGAAGTGGGATATAGCATTCGGTTTGAAGA
CAAGACGTCTCCAACAACCAAAATCAAGTTTATGACGGATGGAATGCTGT
TGCGTGAATACCTCGCCGACCGCTCCTTGTCTCGCTACTCTGTAATCATT
TTGGATGAAGCTCACGAACGCACCATCAACACTGACGTGTTGTTTGGACT
GATGTATCGGTTGTTGCAGAAACGGCGTGATTTACGTGTGATTTGTACTT
CTGCAACTTTGGATGCAGAAAAGTTTTCGTCCTTCTTCTTTGACTGCCCC
ATTTTCAAGATCCCAGGTCGAATGTTTCCGGTGCGAACCTACCACGCTAC
GGAGCCAGCTGATGACTATGTAGAATTGGCAGTACGAACAGCGATGAAGC
TGCATGTTACTGAACCTGCTGGGGATATTTTGGTCTTC
back to top