mRNA_M-pyrifera_M_contig68430.16469.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68430.16469.1
Unique NamemRNA_M-pyrifera_M_contig68430.16469.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig68430.16469.1 vs. uniprot
Match: A0A5A8DU39_CAFRO (Uncharacterized protein n=6 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DU39_CAFRO)

HSP 1 Score: 105 bits (261), Expect = 2.360e-24
Identity = 52/91 (57.14%), Postives = 71/91 (78.02%), Query Frame = 1
Query:    7 RGHRQRGAGTVVTSRGAVETAGGLVIKEWQRTPVQLLLEFTQRSKRPKPRYDRIRA---DVKGKIKYRVVLQDAKKPGSDADLIFVPRECF 270
            RGHRQ+GAGT +TSRG V T G + +KEWQRTP QLL E+TQR KRP+P++ ++RA   D  G+I+ RV++QD K+PG+D DL+F+P + F
Sbjct:   41 RGHRQKGAGTTITSRGDV-TVGAITMKEWQRTPKQLLHEWTQRDKRPRPKFSKLRARPGDDPGQIRCRVIVQDQKRPGTDKDLLFMPNQSF 130          
BLAST of mRNA_M-pyrifera_M_contig68430.16469.1 vs. uniprot
Match: D8M597_BLAHO (Uncharacterized protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M597_BLAHO)

HSP 1 Score: 81.6 bits (200), Expect = 2.350e-17
Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = 1
Query:    1 QARGHRQRGAGTVVTSRGAVETAGGLVIKEWQRTPVQLLLEFTQRSKRPKPRYDRIRADVKGKIKYRVVLQDAKKPGSDADLIFVPRECF 270
            +A+GHRQRGAGTVV S+G V T GG+V+KEWQRTP+QL+ E+ Q+ KRP P+     A   G+   R++L D K    D DL+F  +E F
Sbjct:   32 KAKGHRQRGAGTVVVSKGEV-TVGGVVMKEWQRTPLQLVREYCQKQKRPMPQLLNASAPA-GRFAIRLILPDPKN--KDRDLVFTSKESF 117          
BLAST of mRNA_M-pyrifera_M_contig68430.16469.1 vs. uniprot
Match: UPI000711E537 (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711E537)

HSP 1 Score: 82.4 bits (202), Expect = 2.210e-16
Identity = 47/88 (53.41%), Postives = 60/88 (68.18%), Query Frame = 1
Query:    7 RGHRQRGAGTVVTSRGAVETAGGLVIKEWQRTPVQLLLEFTQRSKRPKPRYDRIRADVKGKIKYRVVLQDAKKPGSDADLIFVPRECF 270
            +GHRQ+GAGTVV S+G + T GG+V+KEWQRTP QL+ E+ Q+ KRPKP ++  RA   GK   RV+L D K    + DLIF   E F
Sbjct:   28 KGHRQKGAGTVVVSKGEI-TVGGVVMKEWQRTPAQLVQEYCQKQKRPKPLFNNDRAPP-GKFCVRVILPDPKN--REKDLIFASTESF 111          
BLAST of mRNA_M-pyrifera_M_contig68430.16469.1 vs. uniprot
Match: A0A196SMN8_BLAHN (ATP-dependent RNA helicase n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SMN8_BLAHN)

HSP 1 Score: 80.9 bits (198), Expect = 7.700e-16
Identity = 46/88 (52.27%), Postives = 60/88 (68.18%), Query Frame = 1
Query:    7 RGHRQRGAGTVVTSRGAVETAGGLVIKEWQRTPVQLLLEFTQRSKRPKPRYDRIRADVKGKIKYRVVLQDAKKPGSDADLIFVPRECF 270
            RGHRQ+GAGTV+ S+G V T GG+V+KEWQRTP QL+ E+ Q+ KRPKP +   RA   G++  RVVL D K    + DL+F   + F
Sbjct:   34 RGHRQKGAGTVIVSKGEV-TVGGVVMKEWQRTPSQLVQEYCQKQKRPKPLFQNDRAPP-GRVCIRVVLPDPKN--KEKDLVFSSTDSF 117          
BLAST of mRNA_M-pyrifera_M_contig68430.16469.1 vs. uniprot
Match: A0A1V9ZPF8_9STRA (ATP-dependent RNA helicase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZPF8_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.430e-15
Identity = 45/88 (51.14%), Postives = 60/88 (68.18%), Query Frame = 1
Query:    1 QARGHRQRGAGTVVTSRGAVETAGGLVIKEWQRTPVQLLLEFTQRSKRPKPRYDRIRADVKGKIKYRVVLQDAKKPGSDADLIFVPRE 264
            +ARGHRQ+GAGTV TSRG  +T  G++ KEWQRTP+QLL E+ Q  KR +P +  + ++ K + + R VL DAK    D DLIF P +
Sbjct:    7 KARGHRQKGAGTVATSRGE-QTRQGVLCKEWQRTPMQLLREYCQSVKRQQPIFHEVNSNNKNEFRVRCVLPDAKS--KDKDLIFCPAQ 91          
BLAST of mRNA_M-pyrifera_M_contig68430.16469.1 vs. uniprot
Match: A0A7R9UC36_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UC36_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.570e-15
Identity = 46/90 (51.11%), Postives = 62/90 (68.89%), Query Frame = 1
Query:    1 QARGHRQRGAGTVVTSRGAVETAGGLVIKEWQRTPVQLLLEFTQRSKRPKPRYDRIRADVKGKIKYRVVLQDAKKPGSDADLIFVPRECF 270
            +ARGHRQRGAG V T+R AVE  GG ++++WQR P QLL EF QR +RP+PRY       + + + +VV+ DAKK  S+ DL F+P + F
Sbjct:   25 RARGHRQRGAGAVRTARAAVER-GGTLVEQWQRLPTQLLQEFCQRDRRPRPRYL-----SQSRKRMKVVVPDAKK--SEKDLHFLPEQAF 106          
BLAST of mRNA_M-pyrifera_M_contig68430.16469.1 vs. uniprot
Match: A0A2D4BVX1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BVX1_PYTIN)

HSP 1 Score: 76.3 bits (186), Expect = 3.280e-14
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   10 GHRQRGAGTVVTSRGAVETAGGLVIKEWQRTPVQLLLEFTQRSKRPKPRYDRIRADVKGKIKYRVVLQDAKKPGSDADLIFVPRECF 270
            GHRQRGAGTV  SRG +    G+V+KEWQRTP+Q+L E+ Q  KR  PRY   RA  +G+ + R +L D K   S  DL+F P + F
Sbjct:    8 GHRQRGAGTVTVSRGEI-VRQGVVVKEWQRTPMQILHEYCQSKKRQNPRYVHARAP-EGRTRMRCILPDDKS--SAKDLVFCPEQSF 90          
BLAST of mRNA_M-pyrifera_M_contig68430.16469.1 vs. uniprot
Match: A0A8J1YTH2_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J1YTH2_9DINO)

HSP 1 Score: 75.9 bits (185), Expect = 4.430e-14
Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 1
Query:    7 RGHRQRGAGTVVTSRGAVETAGGLVIKEWQRTPVQLLLEFTQRSKRPKPRYDRIRADVKGKIKYRVVLQDAKKPGSDADLIF 252
            +GHRQRG GTVV  +G V T+ G+ +K WQR P Q+LLE+TQ+ KRPKPRY   +A      + R +L D K   +  DL+F
Sbjct:   39 KGHRQRGGGTVVADKGPVTTSDGIALKSWQRLPSQVLLEWTQKQKRPKPRYVTAKAFQPDTFRKRCILPDVKDTPAK-DLVF 119          
BLAST of mRNA_M-pyrifera_M_contig68430.16469.1 vs. uniprot
Match: A0A067CVF3_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CVF3_SAPPC)

HSP 1 Score: 75.1 bits (183), Expect = 8.230e-14
Identity = 42/88 (47.73%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    1 QARGHRQRGAGTVVTSRGAVETAGGLVIKEWQRTPVQLLLEFTQRSKRPKPRYDRIRADVKGKIKYRVVLQDAKKPGSDADLIFVPRE 264
            +ARGHRQ+GAGTV TSRG  +   G+  KEWQRTP+QLL E+ Q  KR +P +  +  +   + + R +L DAK    D DLIF P +
Sbjct:    7 RARGHRQKGAGTVATSRGE-QVRQGVSCKEWQRTPMQLLREYCQSVKRQQPHFHEVHTNSDAEFRIRCILPDAKS--RDKDLIFCPAQ 91          
BLAST of mRNA_M-pyrifera_M_contig68430.16469.1 vs. uniprot
Match: A0A024U513_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U513_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.120e-13
Identity = 44/88 (50.00%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    1 QARGHRQRGAGTVVTSRGAVETAGGLVIKEWQRTPVQLLLEFTQRSKRPKPRYDRIRADVKGKIKYRVVLQDAKKPGSDADLIFVPRE 264
            +ARGHRQ+GAGTV  S+G  +   G++ KEWQRTPVQLL E+ +  KR  PRY  +  D     + R VL DAK    D DLIF P +
Sbjct:    8 KARGHRQKGAGTVAVSQGE-QVRQGVLCKEWQRTPVQLLHEYCRNVKRQPPRYHDVHTDSDHVFRVRCVLPDAKT--KDKDLIFCPAQ 92          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68430.16469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DU39_CAFRO2.360e-2457.14Uncharacterized protein n=6 Tax=Cafeteria roenberg... [more]
D8M597_BLAHO2.350e-1751.11Uncharacterized protein n=1 Tax=Blastocystis homin... [more]
UPI000711E5372.210e-1653.41hypothetical protein n=1 Tax=Blastocystis sp. subt... [more]
A0A196SMN8_BLAHN7.700e-1652.27ATP-dependent RNA helicase n=1 Tax=Blastocystis sp... [more]
A0A1V9ZPF8_9STRA1.430e-1551.14ATP-dependent RNA helicase n=1 Tax=Thraustotheca c... [more]
A0A7R9UC36_9STRA2.570e-1551.11Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A2D4BVX1_PYTIN3.280e-1450.57Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A8J1YTH2_9DINO4.430e-1448.78Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A067CVF3_SAPPC8.230e-1447.73Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A024U513_9STRA1.120e-1350.00Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68430contigM-pyrifera_M_contig68430:4..273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue6.4e-12
Seed eggNOG ortholog42099.EPrPV00000015254
KEGG koko:K13026
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RWD
EggNOG OGs1MGI0@121069,COG1643@1,KOG0920@2759
EC3.6.4.13
COG Functional cat.A
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816576.339117-CDS-M-pyrifera_M_contig68430:3..2731622816576.339117-CDS-M-pyrifera_M_contig68430:3..273Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68430 4..273 -
1692278056.5587249-CDS-M-pyrifera_M_contig68430:3..2731692278056.5587249-CDS-M-pyrifera_M_contig68430:3..273Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68430 4..273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68430.16469.1prot_M-pyrifera_M_contig68430.16469.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68430 4..273 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68430.16469.1

>prot_M-pyrifera_M_contig68430.16469.1 ID=prot_M-pyrifera_M_contig68430.16469.1|Name=mRNA_M-pyrifera_M_contig68430.16469.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
QARGHRQRGAGTVVTSRGAVETAGGLVIKEWQRTPVQLLLEFTQRSKRPK
PRYDRIRADVKGKIKYRVVLQDAKKPGSDADLIFVPRECF
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mRNA from alignment at M-pyrifera_M_contig68430:4..273-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68430.16469.1 ID=mRNA_M-pyrifera_M_contig68430.16469.1|Name=mRNA_M-pyrifera_M_contig68430.16469.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig68430:4..273- (Macrocystis pyrifera P11B4 male)
CAGGCAAGGGGGCATCGTCAGCGTGGTGCAGGGACTGTTGTGACTTCACG TGGTGCAGTTGAGACTGCTGGTGGTTTGGTGATTAAAGAATGGCAAAGAA CACCTGTGCAATTGTTGTTGGAGTTTACACAGCGCTCCAAGCGTCCAAAA CCAAGGTATGATAGGATTCGAGCGGATGTAAAGGGCAAAATCAAGTATAG AGTAGTATTACAAGATGCAAAGAAGCCAGGATCTGATGCTGATTTGATAT TTGTGCCTCGTGAATGCTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68430:4..273-

>mRNA_M-pyrifera_M_contig68430.16469.1 ID=mRNA_M-pyrifera_M_contig68430.16469.1|Name=mRNA_M-pyrifera_M_contig68430.16469.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig68430:4..273- (Macrocystis pyrifera P11B4 male)
CAGGCAAGGGGGCATCGTCAGCGTGGTGCAGGGACTGTTGTGACTTCACG
TGGTGCAGTTGAGACTGCTGGTGGTTTGGTGATTAAAGAATGGCAAAGAA
CACCTGTGCAATTGTTGTTGGAGTTTACACAGCGCTCCAAGCGTCCAAAA
CCAAGGTATGATAGGATTCGAGCGGATGTAAAGGGCAAAATCAAGTATAG
AGTAGTATTACAAGATGCAAAGAAGCCAGGATCTGATGCTGATTTGATAT
TTGTGCCTCGTGAATGCTTTCAGGCAAGGGGGCATCGTCAGCGTGGTGCA
GGGACTGTTGTGACTTCACGTGGTGCAGTTGAGACTGCTGGTGGTTTGGT
GATTAAAGAATGGCAAAGAACACCTGTGCAATTGTTGTTGGAGTTTACAC
AGCGCTCCAAGCGTCCAAAACCAAGGTATGATAGGATTCGAGCGGATGTA
AAGGGCAAAATCAAGTATAGAGTAGTATTACAAGATGCAAAGAAGCCAGG
ATCTGATGCTGATTTGATATTTGTGCCTCGTGAATGCTTT
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