mRNA_M-pyrifera_M_contig68422.16465.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68422.16465.1
Unique NamemRNA_M-pyrifera_M_contig68422.16465.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig68422.16465.1 vs. uniprot
Match: A0A812KVL6_9DINO (Vacuolar protein 8 (Fragment) n=5 Tax=Sar TaxID=2698737 RepID=A0A812KVL6_9DINO)

HSP 1 Score: 128 bits (322), Expect = 2.100e-32
Identity = 62/94 (65.96%), Postives = 80/94 (85.11%), Query Frame = 1 
Query:    1 MAKVLEALIARGRRVRRPREQREVAFGLADLSTHRDMHIKMVIKGAVRSLTTLLERSTDAEAQRFSALALGNICATEKNRAPVVNEGALKPMID 282
            M++VLEALIARGRRVR+P+EQREVAFGLADLSTH ++H+ MV KG V++L  +LE S DA+AQRF+ALALGN+ AT +NR P+  EG +KP++D
Sbjct:   24 MSRVLEALIARGRRVRKPKEQREVAFGLADLSTHPEIHVNMVRKGTVKTLMHILETSGDADAQRFAALALGNVAATTENRIPIAEEGVIKPLVD 117
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BLAST of mRNA_M-pyrifera_M_contig68422.16465.1 vs. uniprot
Match: D7FT75_ECTSI (Vacuolar protein 8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT75_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 1.430e-29
Identity = 62/95 (65.26%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:    1 MAKVLEALIARGRRVRRPREQREVAFGLADLSTHRDMHIKMVIKGAVRSLTTLLERSTDAEAQRFSALALGNICATEKNRAPVVNEGALKPMIDF 285
            MAKVLEALIA+GRRVRRPREQ+EVAFGLADLSTH ++H ++V KG +RSL  LL RS DAEAQRFSAL + N  +    R  +V +G L+PMI+F
Sbjct:    1 MAKVLEALIAKGRRVRRPREQKEVAFGLADLSTHEELHDRIVKKGGIRSLLELLRRSQDAEAQRFSALCIANCASAVFTRLQIVEDGVLEPMINF 95
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BLAST of mRNA_M-pyrifera_M_contig68422.16465.1 vs. uniprot
Match: A0A8J2SEI2_9STRA (Vacuolar protein 8 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEI2_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.720e-28
Identity = 60/98 (61.22%), Postives = 75/98 (76.53%), Query Frame = 1 
Query:    1 MAKVLEALIARGRRVRRPREQREVAFGLADLSTHRDMHIKMVIKGAVRSLTTLLERSTDAEAQRFSALALGNICATEKNRAPVVNEGALKPMIDFCAA 294
            MAKVLEALIA+GRRVRRPREQ+EVAFGL DLSTH ++H ++V KG ++SL  LL  S D EAQRF+ALA+GN  +   NR  +V EG L  ++D+ AA
Sbjct:    1 MAKVLEALIAKGRRVRRPREQKEVAFGLCDLSTHTELHERIVKKGGIKSLVNLLAGSQDNEAQRFAALAIGNCASASYNRLAIVAEGCLTTLVDYTAA 98
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BLAST of mRNA_M-pyrifera_M_contig68422.16465.1 vs. uniprot
Match: A0A2R5GK93_9STRA (Vacuolar protein 8 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GK93_9STRA)

HSP 1 Score: 116 bits (290), Expect = 4.360e-28
Identity = 65/95 (68.42%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:    1 MAKVLEALIARGRRVRRPREQREVAFGLADLSTHRDMHIKMVIKGAVRSLTTLLERSTDAEAQRFSALALGNICATEKNRAP--VVNEGALKPMI 279
            MAKVLE LIARGRRVRRPREQREVAFGLADLSTH D+H +MV KGA  SL  LLERS D E QRFSALALGN+ +T +NR    +V+  A++ +I
Sbjct:    1 MAKVLETLIARGRRVRRPREQREVAFGLADLSTHPDIHTRMVQKGACTSLIQLLERSGDLETQRFSALALGNMASTAENRVKMEIVHLNAIEALI 95
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BLAST of mRNA_M-pyrifera_M_contig68422.16465.1 vs. uniprot
Match: A0A835Z6R1_9STRA (Vacuolar protein 8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6R1_9STRA)

HSP 1 Score: 116 bits (290), Expect = 4.360e-28
Identity = 60/100 (60.00%), Postives = 76/100 (76.00%), Query Frame = 1 
Query:    1 MAKVLEALIARGRRVRRPREQREVAFGLADLSTHRDMHIKMVIKGAVRSLTTLLERSTDAEAQRFSALALGNICATEKNRAPVVNEGALKPMIDFCAARD 300
            MAKVLEALIA+GRRV+RPREQ+EVAFGLADLSTH ++H ++V KG VR++  LL RS DAEAQRF ALA+ N  ++   R  +V +G L+P+I F    D
Sbjct:    1 MAKVLEALIAKGRRVKRPREQKEVAFGLADLSTHEELHDRIVKKGGVRTVVDLLRRSQDAEAQRFCALAIANCASSIFTRTHIVEDGVLEPLIGFVKNED 100
[Close]
BLAST of mRNA_M-pyrifera_M_contig68422.16465.1 vs. uniprot
Match: A0A2D4BS91_PYTIN (Vacuolar protein 8 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BS91_PYTIN)

HSP 1 Score: 100 bits (250), Expect = 1.100e-22
Identity = 51/100 (51.00%), Postives = 72/100 (72.00%), Query Frame = 1 
Query:    1 MAKVLEALIARGRRVRRPREQREVAFGLADLSTHRDMHIKMVIKGAVRSLTTLLERSTDAEAQRFSALALGNICATEKNRAPVVNEGALKPMIDFCAARD 300
            M+KVLE LIARGRR R+P EQR+VAF LA++ST+ ++H +MV KG V++L TL+ +STD EA R ++L L N  +T   R  +V +GAL P+++F    D
Sbjct:    1 MSKVLEQLIARGRRERKPTEQRDVAFSLAEISTNAELHERMVSKGVVKALLTLILKSTDVEALRLASLCLANTASTPAARLKIVQDGALPPLVEFLQQPD 100
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BLAST of mRNA_M-pyrifera_M_contig68422.16465.1 vs. uniprot
Match: A0A2D4CA65_PYTIN (Delta-aminolevulinic acid dehydratase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CA65_PYTIN)

HSP 1 Score: 100 bits (250), Expect = 1.100e-22
Identity = 51/100 (51.00%), Postives = 72/100 (72.00%), Query Frame = 1 
Query:    1 MAKVLEALIARGRRVRRPREQREVAFGLADLSTHRDMHIKMVIKGAVRSLTTLLERSTDAEAQRFSALALGNICATEKNRAPVVNEGALKPMIDFCAARD 300
            M+KVLE LIARGRR R+P EQR+VAF LA++ST+ ++H +MV KG V++L TL+ +STD EA R ++L L N  +T   R  +V +GAL P+++F    D
Sbjct:  344 MSKVLEQLIARGRRERKPTEQRDVAFSLAEISTNAELHERMVSKGVVKALLTLILKSTDVEALRLASLCLANTASTPAARLKIVQDGALPPLVEFLQQPD 443
[Close]
BLAST of mRNA_M-pyrifera_M_contig68422.16465.1 vs. uniprot
Match: A0A0P1A8H9_PLAHL (Vacuolar protein 8 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A8H9_PLAHL)

HSP 1 Score: 100 bits (248), Expect = 2.050e-22
Identity = 50/95 (52.63%), Postives = 72/95 (75.79%), Query Frame = 1 
Query:    1 MAKVLEALIARGRRVRRPREQREVAFGLADLSTHRDMHIKMVIKGAVRSLTTLLERSTDAEAQRFSALALGNICATEKNRAPVVNEGALKPMIDF 285
            M+KVLE LIARGRR R P +QR+VAFGLA++ST+ ++H KMV KG V +L TL+ +S+D+EA R + L L N+ ++  +R  +V EGAL P+++F
Sbjct:    1 MSKVLEQLIARGRRERSPTDQRDVAFGLANISTNAELHEKMVSKGVVNALLTLILQSSDSEALRLACLCLANVASSPASRIRIVEEGALPPLVNF 95
[Close]
BLAST of mRNA_M-pyrifera_M_contig68422.16465.1 vs. uniprot
Match: A0A421FVK0_9STRA (Vacuolar protein 8 n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421FVK0_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.780e-22
Identity = 49/95 (51.58%), Postives = 71/95 (74.74%), Query Frame = 1 
Query:    1 MAKVLEALIARGRRVRRPREQREVAFGLADLSTHRDMHIKMVIKGAVRSLTTLLERSTDAEAQRFSALALGNICATEKNRAPVVNEGALKPMIDF 285
            M+KVLE LIARGRR R+P EQR+VAF LA++ST+ ++H KMV KG +++L  L+ +S+DAEA R + L L N+ +   +R  +V EGAL P+++F
Sbjct:    1 MSKVLEQLIARGRRERKPTEQRDVAFSLAEISTNAELHDKMVSKGVIKALLALILQSSDAEALRLACLCLANVASCPTSRVRIVEEGALPPLVNF 95
[Close]
BLAST of mRNA_M-pyrifera_M_contig68422.16465.1 vs. uniprot
Match: A0A421GNU9_9STRA (Vacuolar protein 8 n=31 Tax=Phytophthora TaxID=4783 RepID=A0A421GNU9_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.790e-22
Identity = 49/95 (51.58%), Postives = 71/95 (74.74%), Query Frame = 1 
Query:    1 MAKVLEALIARGRRVRRPREQREVAFGLADLSTHRDMHIKMVIKGAVRSLTTLLERSTDAEAQRFSALALGNICATEKNRAPVVNEGALKPMIDF 285
            M+KVLE LIARGRR R+P EQR+VAF LA++ST+ ++H KMV KG +++L  L+ +S+DAEA R + L L N+ +   +R  +V EGAL P+++F
Sbjct:  430 MSKVLEQLIARGRRERKPTEQRDVAFSLAEISTNAELHDKMVSKGVIKALLALILQSSDAEALRLACLCLANVASCPTSRVRIVEEGALPPLVNF 524
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68422.16465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812KVL6_9DINO2.100e-3265.96Vacuolar protein 8 (Fragment) n=5 Tax=Sar TaxID=26... [more]
D7FT75_ECTSI1.430e-2965.26Vacuolar protein 8 n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A8J2SEI2_9STRA1.720e-2861.22Vacuolar protein 8 n=1 Tax=Pelagomonas calceolata ... [more]
A0A2R5GK93_9STRA4.360e-2868.42Vacuolar protein 8 n=1 Tax=Hondaea fermentalgiana ... [more]
A0A835Z6R1_9STRA4.360e-2860.00Vacuolar protein 8 n=1 Tax=Tribonema minus TaxID=3... [more]
A0A2D4BS91_PYTIN1.100e-2251.00Vacuolar protein 8 n=1 Tax=Pythium insidiosum TaxI... [more]
A0A2D4CA65_PYTIN1.100e-2251.00Delta-aminolevulinic acid dehydratase n=1 Tax=Pyth... [more]
A0A0P1A8H9_PLAHL2.050e-2252.63Vacuolar protein 8 n=1 Tax=Plasmopara halstedii Ta... [more]
A0A421FVK0_9STRA2.780e-2251.58Vacuolar protein 8 n=1 Tax=Phytophthora kernoviae ... [more]
A0A421GNU9_9STRA2.790e-2251.58Vacuolar protein 8 n=31 Tax=Phytophthora TaxID=478... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68422contigM-pyrifera_M_contig68422:930..1229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue2.5e-25
Seed eggNOG ortholog2880.D7FT75
KEGG koko:K08332
Hectar predicted targeting categoryother localisation
EggNOG free text desc.nucleus-vacuole junction assembly
EggNOG OGsKOG0167@1,KOG0167@2759,KOG4224@1,KOG4224@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko04131
Exons1
Model size300
Cds size300
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816576.1724656-CDS-M-pyrifera_M_contig68422:929..12291622816576.1724656-CDS-M-pyrifera_M_contig68422:929..1229Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68422 930..1229 +
1692278056.4764311-CDS-M-pyrifera_M_contig68422:929..12291692278056.4764311-CDS-M-pyrifera_M_contig68422:929..1229Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68422 930..1229 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68422.16465.1prot_M-pyrifera_M_contig68422.16465.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68422 930..1229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68422.16465.1

>prot_M-pyrifera_M_contig68422.16465.1 ID=prot_M-pyrifera_M_contig68422.16465.1|Name=mRNA_M-pyrifera_M_contig68422.16465.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
MAKVLEALIARGRRVRRPREQREVAFGLADLSTHRDMHIKMVIKGAVRSL
TTLLERSTDAEAQRFSALALGNICATEKNRAPVVNEGALKPMIDFCAARD
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mRNA from alignment at M-pyrifera_M_contig68422:930..1229+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68422.16465.1 ID=mRNA_M-pyrifera_M_contig68422.16465.1|Name=mRNA_M-pyrifera_M_contig68422.16465.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig68422:930..1229+ (Macrocystis pyrifera P11B4 male)
ATGGCCAAGGTCCTGGAGGCGCTGATTGCGCGTGGCCGCCGTGTGCGGCG
GCCGCGCGAGCAGCGTGAGGTGGCCTTTGGTCTCGCCGACCTGTCCACGC
ACAGAGACATGCACATCAAGATGGTCATCAAGGGCGCCGTGCGGTCTTTG
ACCACGCTGCTGGAGCGGTCGACGGACGCGGAGGCGCAGCGGTTTTCGGC
GCTGGCGCTGGGAAACATCTGCGCGACGGAGAAAAACCGCGCGCCGGTGG
TGAACGAGGGCGCGCTGAAGCCCATGATCGACTTCTGCGCGGCGCGAGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68422:930..1229+

>mRNA_M-pyrifera_M_contig68422.16465.1 ID=mRNA_M-pyrifera_M_contig68422.16465.1|Name=mRNA_M-pyrifera_M_contig68422.16465.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig68422:930..1229+ (Macrocystis pyrifera P11B4 male)
ATGGCCAAGGTCCTGGAGGCGCTGATTGCGCGTGGCCGCCGTGTGCGGCG
GCCGCGCGAGCAGCGTGAGGTGGCCTTTGGTCTCGCCGACCTGTCCACGC
ACAGAGACATGCACATCAAGATGGTCATCAAGGGCGCCGTGCGGTCTTTG
ACCACGCTGCTGGAGCGGTCGACGGACGCGGAGGCGCAGCGGTTTTCGGC
GCTGGCGCTGGGAAACATCTGCGCGACGGAGAAAAACCGCGCGCCGGTGG
TGAACGAGGGCGCGCTGAAGCCCATGATCGACTTCTGCGCGGCGCGAGAC
ATGGCCAAGGTCCTGGAGGCGCTGATTGCGCGTGGCCGCCGTGTGCGGCG
GCCGCGCGAGCAGCGTGAGGTGGCCTTTGGTCTCGCCGACCTGTCCACGC
ACAGAGACATGCACATCAAGATGGTCATCAAGGGCGCCGTGCGGTCTTTG
ACCACGCTGCTGGAGCGGTCGACGGACGCGGAGGCGCAGCGGTTTTCGGC
GCTGGCGCTGGGAAACATCTGCGCGACGGAGAAAAACCGCGCGCCGGTGG
TGAACGAGGGCGCGCTGAAGCCCATGATCGACTTCTGCGCGGCGCGAGAC
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