mRNA_M-pyrifera_M_contig68385.16455.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68385.16455.1
Unique NamemRNA_M-pyrifera_M_contig68385.16455.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig68385.16455.1 vs. uniprot
Match: A0A812V938_9DINO (LRRC6 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812V938_9DINO)

HSP 1 Score: 109 bits (273), Expect = 9.360e-26
Identity = 51/80 (63.75%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    1 GRWKFHMEDEDGKGNVVLRVALPKFLDASLVDVDAHPTYVRVVAKGKVLLLHWPEEVKSDAGTAQRSTASGELKLTMPKV 240
            GR  F +EDEDG+GN VL + LP+FLD+SLVDVD HP YV VV K K+  LHWPEEV+ DAG+A+RST +G L +T+PKV
Sbjct:  703 GRLDFKLEDEDGQGNSVLTLPLPRFLDSSLVDVDVHPLYVSVVVKNKLFRLHWPEEVRPDAGSARRSTTTGALVITVPKV 782          
BLAST of mRNA_M-pyrifera_M_contig68385.16455.1 vs. uniprot
Match: A0A5A8EHX8_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EHX8_CAFRO)

HSP 1 Score: 97.4 bits (241), Expect = 1.710e-21
Identity = 46/88 (52.27%), Postives = 65/88 (73.86%), Query Frame = 1
Query:   10 KFHMEDEDGKGNVVLRVALPKFLDASLVDVDAHPTYVRVVAKGKVLLLHWPEEVKSDAGTAQRSTASGELKLTMPKVHRNPILERIAR 273
            +F ++DEDG+GNVVL + LP+FLD+SL+DVDAHP +V +VA+GKV  + WP+EV    G A RS+ +G L LTMPK  ++    R+A+
Sbjct:  294 EFTLDDEDGQGNVVLVLQLPRFLDSSLIDVDAHPGHVSIVARGKVFRMAWPDEVVVAEGKATRSSTTGALTLTMPKARKSRHAMRLAK 381          
BLAST of mRNA_M-pyrifera_M_contig68385.16455.1 vs. uniprot
Match: F0WK66_9STRA (Uncharacterized protein AlNc14C130G6917 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WK66_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.500e-17
Identity = 39/80 (48.75%), Postives = 56/80 (70.00%), Query Frame = 1
Query:    1 GRWKFHMEDEDGKGNVVLRVALPKFLDASLVDVDAHPTYVRVVAKGKVLLLHWPEEVKSDAGTAQRSTASGELKLTMPKV 240
            G+W+FH+ +   +  ++L + LPKFLD SL+DVD HPTYV ++ K K   L +PE V+SD G A+RS A+G L+L +PK 
Sbjct:  274 GKWEFHLSETIDQ--LILELNLPKFLDTSLIDVDVHPTYVSIIVKNKRFRLRFPEAVQSDRGKAERSKATGVLRLELPKT 351          
BLAST of mRNA_M-pyrifera_M_contig68385.16455.1 vs. uniprot
Match: A0A1X7VK84_AMPQE (LRRcap domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VK84_AMPQE)

HSP 1 Score: 83.6 bits (205), Expect = 1.180e-16
Identity = 45/104 (43.27%), Postives = 65/104 (62.50%), Query Frame = 1
Query:    1 GRWKFHMEDEDGKGNVVLRVALPKFLDASLVDVDAHPTYVRVVAKGKVLLLHWPEEVKSDAGTAQRSTASGELKLTMPKVHRNPIL--ERIARSHKQERGKTKD 306
            G++ FH+ ++D     VL V+ P+F+D+SLVD + HPT+VRV+ KGK+L L   EEV  D   A+RS  +G L +TMPK    P+L  +R     K+ + K KD
Sbjct:  284 GKYDFHLTEDDNNNQFVLDVSCPRFMDSSLVDCEVHPTFVRVLIKGKILQLVLQEEVSPDQSEAKRSQTTGHLLVTMPKS--KPVLRPKRNETMTKESKNKEKD 385          
BLAST of mRNA_M-pyrifera_M_contig68385.16455.1 vs. uniprot
Match: A0A226E4Y4_FOLCA (Protein tilB n=2 Tax=Folsomia candida TaxID=158441 RepID=A0A226E4Y4_FOLCA)

HSP 1 Score: 82.4 bits (202), Expect = 3.340e-16
Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 1
Query:   13 FHMEDEDGKGNVVLRVALPKFLDASLVDVDAHPTYVRVVAKGKVLLLHWPEEVKSDAGTAQRSTASGELKLTMPKVHRNPIL 258
            F + DE  +  +VL +A+P+FL  +L+D D  PTYVRV  KGK+  L  PEEV+ D+  AQRS  +G L +TMPKVH +  L
Sbjct:  291 FILHDEVERNQIVLDLAVPRFLCITLIDADVQPTYVRVTVKGKIFQLVLPEEVRPDSSYAQRSQTTGHLIVTMPKVHEHSTL 372          
BLAST of mRNA_M-pyrifera_M_contig68385.16455.1 vs. uniprot
Match: UPI0004D070E9 (protein tilB homolog n=1 Tax=Galeopterus variegatus TaxID=482537 RepID=UPI0004D070E9)

HSP 1 Score: 76.6 bits (187), Expect = 5.260e-16
Identity = 35/80 (43.75%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   13 FHMEDEDGKGNVVLRVALPKFLDASLVDVDAHPTYVRVVAKGKVLLLHWPEEVKSDAGTAQRSTASGELKLTMPKVHRNP 252
            F ++D++ +  ++L +A+ +++D SL+DVD  PTYVRV+ KGK   L  P EVK D+ +A+RS  +G L + MPKV   P
Sbjct:    3 FSLKDDEKRNQIILDLAVYRYMDTSLIDVDVQPTYVRVMVKGKPFQLVLPAEVKPDSSSAKRSQTTGHLVICMPKVLNEP 82          
BLAST of mRNA_M-pyrifera_M_contig68385.16455.1 vs. uniprot
Match: UPI0007F89405 (protein tilB homolog isoform X1 n=3 Tax=Kryptolebias marmoratus TaxID=37003 RepID=UPI0007F89405)

HSP 1 Score: 81.6 bits (200), Expect = 5.810e-16
Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = 1
Query:   10 KFHMEDEDGKGNVVLRVALPKFLDASLVDVDAHPTYVRVVAKGKVLLLHWPEEVKSDAGTAQRSTASGELKLTMPKVHRNPILERI 267
            +F + +++  G+V+L +A+ + +D SL+DVD HPT+VRV+ KGKV  +  P EVK D  TAQRS  +G L LTMP+V     L R+
Sbjct:  273 EFSLTEDEESGSVLLDLAVYRHMDTSLIDVDIHPTFVRVLVKGKVFQVVLPAEVKPDGSTAQRSQTTGHLVLTMPRVRTPLDLSRV 358          
BLAST of mRNA_M-pyrifera_M_contig68385.16455.1 vs. uniprot
Match: A0A7S2XPK9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XPK9_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 8.150e-16
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 1
Query:    1 GRWKFHMEDEDGKGNVVLRVALPKFLDASLVDVDAHPTYVRVVAKGKVLLLHWPEEVKSDAGTAQRSTASGELKLTMPKV 240
            G+W+F +++E   G  VL V L K+L  SLVDVD HPT+VR+V K K+L L  P EV++    AQRS  +G L ++MPKV
Sbjct:  282 GKWEFTLDEETRPGYFVLDVTLQKYLSTSLVDVDVHPTFVRIVIKSKLLRLVLPCEVQAKESIAQRSATTGHLVISMPKV 361          
BLAST of mRNA_M-pyrifera_M_contig68385.16455.1 vs. uniprot
Match: A0A8J6EBZ3_ELECQ (Uncharacterized protein (Fragment) n=1 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6EBZ3_ELECQ)

HSP 1 Score: 74.7 bits (182), Expect = 1.370e-15
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 1
Query:    4 RWKFHMEDEDGKGNVVLRVALPKFLDASLVDVDAHPTYVRVVAKGKVLLLHWPEEVKSDAGTAQRSTASGELKLTMPK 237
            R  F + D++    ++L + + + LD SLVDVD HP YVRV+ K K   L  PEEVK D+ +A+RS  +G L +TMPK
Sbjct:    3 RLDFSLVDDEENNQIILDLGIYRHLDTSLVDVDVHPNYVRVLVKNKAFQLVLPEEVKPDSSSARRSQTTGHLVVTMPK 80          
BLAST of mRNA_M-pyrifera_M_contig68385.16455.1 vs. uniprot
Match: A0A2P8Y373_BLAGE (Protein tilB n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8Y373_BLAGE)

HSP 1 Score: 80.1 bits (196), Expect = 1.730e-15
Identity = 35/77 (45.45%), Postives = 58/77 (75.32%), Query Frame = 1
Query:   13 FHMEDEDGKGNVVLRVALPKFLDASLVDVDAHPTYVRVVAKGKVLLLHWPEEVKSDAGTAQRSTASGELKLTMPKVH 243
            F + +++   ++VL +A+ ++LD SL+DVD HPTYV+V+ KGK+  + + EE+K+++ TA+RS  +G L LTMPKV+
Sbjct:  237 FQLSEDEETNSLVLDIAIYRYLDTSLLDVDIHPTYVKVLIKGKIFQIVFNEEIKTESSTAKRSQTTGHLVLTMPKVN 313          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68385.16455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812V938_9DINO9.360e-2663.75LRRC6 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A5A8EHX8_CAFRO1.710e-2152.27Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
F0WK66_9STRA3.500e-1748.75Uncharacterized protein AlNc14C130G6917 n=1 Tax=Al... [more]
A0A1X7VK84_AMPQE1.180e-1643.27LRRcap domain-containing protein n=1 Tax=Amphimedo... [more]
A0A226E4Y4_FOLCA3.340e-1648.78Protein tilB n=2 Tax=Folsomia candida TaxID=158441... [more]
UPI0004D070E95.260e-1643.75protein tilB homolog n=1 Tax=Galeopterus variegatu... [more]
UPI0007F894055.810e-1646.51protein tilB homolog isoform X1 n=3 Tax=Kryptolebi... [more]
A0A7S2XPK9_9STRA8.150e-1650.00Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A8J6EBZ3_ELECQ1.370e-1546.15Uncharacterized protein (Fragment) n=1 Tax=Eleuthe... [more]
A0A2P8Y373_BLAGE1.730e-1545.45Protein tilB n=1 Tax=Blattella germanica TaxID=697... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68385contigM-pyrifera_M_contig68385:3..311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue2.5e-17
Seed eggNOG ortholog4787.PITG_16674T0
Preferred nameLRRC6
KEGG koko:K19753
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0001539,GO:0001578,GO:0001655,GO:0001822,GO:0001947,GO:0002009,GO:0003002,GO:0003006,GO:0003007,GO:0003008,GO:0003143,GO:0003146,GO:0003341,GO:0003351,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005929,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007369,GO:0007389,GO:0007507,GO:0007548,GO:0007600,GO:0007605,GO:0007610,GO:0007617,GO:0007618,GO:0007619,GO:0008049,GO:0008150,GO:0008406,GO:0008584,GO:0009266,GO:0009628,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009953,GO:0009987,GO:0010378,GO:0016043,GO:0016545,GO:0019098,GO:0019953,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030317,GO:0030425,GO:0031514,GO:0032501,GO:0032502,GO:0032504,GO:0034622,GO:0035050,GO:0035082,GO:0035239,GO:0035295,GO:0036158,GO:0036159,GO:0036477,GO:0040011,GO:0042752,GO:0042995,GO:0043005,GO:0043226,GO:0043933,GO:0044085,GO:0044424,GO:0044458,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045137,GO:0045433,GO:0046546,GO:0046661,GO:0048065,GO:0048513,GO:0048562,GO:0048568,GO:0048598,GO:0048608,GO:0048609,GO:0048729,GO:0048731,GO:0048793,GO:0048856,GO:0048870,GO:0050789,GO:0050877,GO:0050896,GO:0050954,GO:0051179,GO:0051674,GO:0051704,GO:0060026,GO:0060027,GO:0060179,GO:0060271,GO:0060285,GO:0060287,GO:0060294,GO:0060429,GO:0060562,GO:0061371,GO:0061458,GO:0065003,GO:0065007,GO:0070286,GO:0070925,GO:0071840,GO:0072001,GO:0072359,GO:0097447,GO:0097458,GO:0097722,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.Leucine-rich repeat
EggNOG OGs3Q7IA@4776,COG4886@1,KOG0531@2759
COG Functional cat.T
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons1
Model size309
Cds size291
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816575.2248223-UTR-M-pyrifera_M_contig68385:2..201622816575.2248223-UTR-M-pyrifera_M_contig68385:2..20Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig68385 3..20 +
1692278055.7744431-UTR-M-pyrifera_M_contig68385:2..201692278055.7744431-UTR-M-pyrifera_M_contig68385:2..20Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig68385 3..20 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816575.2401323-CDS-M-pyrifera_M_contig68385:20..3111622816575.2401323-CDS-M-pyrifera_M_contig68385:20..311Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68385 21..311 +
1692278055.796891-CDS-M-pyrifera_M_contig68385:20..3111692278055.796891-CDS-M-pyrifera_M_contig68385:20..311Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68385 21..311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68385.16455.1prot_M-pyrifera_M_contig68385.16455.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68385 21..311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68385.16455.1

>prot_M-pyrifera_M_contig68385.16455.1 ID=prot_M-pyrifera_M_contig68385.16455.1|Name=mRNA_M-pyrifera_M_contig68385.16455.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
MEDEDGKGNVVLRVALPKFLDASLVDVDAHPTYVRVVAKGKVLLLHWPEE
VKSDAGTAQRSTASGELKLTMPKVHRNPILERIARSHKQERGKTKDD
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mRNA from alignment at M-pyrifera_M_contig68385:3..311+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68385.16455.1 ID=mRNA_M-pyrifera_M_contig68385.16455.1|Name=mRNA_M-pyrifera_M_contig68385.16455.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig68385:3..311+ (Macrocystis pyrifera P11B4 male)
GGGCGGTGGAAGTTTCATATGGAAGATGAGGATGGAAAGGGCAATGTGGT GCTCCGAGTGGCACTCCCAAAATTCCTCGATGCCAGTCTCGTGGATGTCG ATGCCCATCCCACCTACGTCAGAGTAGTTGCAAAGGGCAAAGTCCTTCTC CTCCACTGGCCGGAAGAAGTGAAATCTGATGCCGGCACTGCGCAGAGATC CACAGCCTCTGGAGAGCTCAAGCTCACCATGCCCAAAGTGCACAGAAACC CCATCCTCGAGAGAATCGCCAGGTCGCACAAGCAGGAGCGGGGCAAGACC AAGGACGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68385:3..311+

>mRNA_M-pyrifera_M_contig68385.16455.1 ID=mRNA_M-pyrifera_M_contig68385.16455.1|Name=mRNA_M-pyrifera_M_contig68385.16455.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig68385:3..311+ (Macrocystis pyrifera P11B4 male)
ATGGAAGATGAGGATGGAAAGGGCAATGTGGTGCTCCGAGTGGCACTCCC
AAAATTCCTCGATGCCAGTCTCGTGGATGTCGATGCCCATCCCACCTACG
TCAGAGTAGTTGCAAAGGGCAAAGTCCTTCTCCTCCACTGGCCGGAAGAA
GTGAAATCTGATGCCGGCACTGCGCAGAGATCCACAGCCTCTGGAGAGCT
CAAGCTCACCATGCCCAAAGTGCACAGAAACCCCATCCTCGAGAGAATCG
CCAGGTCGCACAAGCAGGAGCGGGGCAAGACCAAGGACGACATGGAAGAT
GAGGATGGAAAGGGCAATGTGGTGCTCCGAGTGGCACTCCCAAAATTCCT
CGATGCCAGTCTCGTGGATGTCGATGCCCATCCCACCTACGTCAGAGTAG
TTGCAAAGGGCAAAGTCCTTCTCCTCCACTGGCCGGAAGAAGTGAAATCT
GATGCCGGCACTGCGCAGAGATCCACAGCCTCTGGAGAGCTCAAGCTCAC
CATGCCCAAAGTGCACAGAAACCCCATCCTCGAGAGAATCGCCAGGTCGC
ACAAGCAGGAGCGGGGCAAGACCAAGGACGAC
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