mRNA_M-pyrifera_M_contig68345.16446.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68345.16446.1
Unique NamemRNA_M-pyrifera_M_contig68345.16446.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig68345.16446.1 vs. uniprot
Match: D8LCV8_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCV8_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 1.230e-35
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:    1 FFAQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRNDRDAFKKKSRLLVRKSQDAL 201
            F  QETAEERWRPILGVEGIIVSV+SMLSDPNDESPANIDAAVMWRNDR+AFKKKSRLLVRKSQDAL
Sbjct:  101 FNEQETAEERWRPILGVEGIIVSVVSMLSDPNDESPANIDAAVMWRNDREAFKKKSRLLVRKSQDAL 167
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BLAST of mRNA_M-pyrifera_M_contig68345.16446.1 vs. uniprot
Match: A0A1Z5KCD4_FISSO (Ubiquitin-conjugating enzyme E2 G2 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KCD4_FISSO)

HSP 1 Score: 108 bits (270), Expect = 5.260e-29
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    1 FFAQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRNDRDAFKKKSRLLVRKSQD 195
            F  QE+AEERWRPILGVE I+VSVISMLSDPNDESPAN+DAAVMWRNDR AFKKK R +VRKSQ+
Sbjct:   60 FNQQESAEERWRPILGVEQILVSVISMLSDPNDESPANLDAAVMWRNDRAAFKKKVRQVVRKSQE 124
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BLAST of mRNA_M-pyrifera_M_contig68345.16446.1 vs. uniprot
Match: A0A1Z5JLS8_FISSO (Ubiquitin-conjugating enzyme E2 G1 n=7 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5JLS8_FISSO)

HSP 1 Score: 108 bits (270), Expect = 1.650e-28
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    1 FFAQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRNDRDAFKKKSRLLVRKSQD 195
            F  QE+AEERWRPILGVE I+VSVISMLSDPNDESPAN+DAAVMWRNDR AFKKK R +VRKSQ+
Sbjct:  101 FNQQESAEERWRPILGVEQILVSVISMLSDPNDESPANLDAAVMWRNDRAAFKKKVRQVVRKSQE 165
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BLAST of mRNA_M-pyrifera_M_contig68345.16446.1 vs. uniprot
Match: A0A7S2LGN5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LGN5_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.650e-28
Identity = 53/63 (84.13%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:    7 AQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRNDRDAFKKKSRLLVRKSQD 195
            AQETA+ERWRPILGVE I++SVISMLSDPNDESPAN+DAAV WRNDR AFKKK R  VRKSQD
Sbjct:  103 AQETADERWRPILGVEQILISVISMLSDPNDESPANLDAAVQWRNDRPAFKKKVRQCVRKSQD 165
[Close]
BLAST of mRNA_M-pyrifera_M_contig68345.16446.1 vs. uniprot
Match: A0A067CW50_SAPPC (UBC core domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CW50_SAPPC)

HSP 1 Score: 107 bits (268), Expect = 3.230e-28
Identity = 51/65 (78.46%), Postives = 60/65 (92.31%), Query Frame = 1 
Query:    7 AQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRNDRDAFKKKSRLLVRKSQDAL 201
            AQE+A+ERWRPILGVE I+VSVISMLSDPND+SPANIDAAV WRND+DAFKK+ R +VRKSQ+ +
Sbjct:  102 AQESADERWRPILGVESILVSVISMLSDPNDDSPANIDAAVEWRNDKDAFKKRCRRIVRKSQEDI 166
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BLAST of mRNA_M-pyrifera_M_contig68345.16446.1 vs. uniprot
Match: A0A4D9D8W7_9STRA (UBC core domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8W7_9STRA)

HSP 1 Score: 107 bits (267), Expect = 4.570e-28
Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:    1 FFAQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRNDRDAFKKKSRLLVRKSQDAL 201
            F +QE+A+ERWRPILGVE IIVSVISMLSDPNDESPANIDAAV WRNDR  FKK+ R +VRKSQ+ L
Sbjct:  100 FNSQESADERWRPILGVEAIIVSVISMLSDPNDESPANIDAAVQWRNDRAGFKKRVRAVVRKSQEDL 166
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BLAST of mRNA_M-pyrifera_M_contig68345.16446.1 vs. uniprot
Match: A0A7S3QJH2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJH2_9STRA)

HSP 1 Score: 107 bits (267), Expect = 4.820e-28
Identity = 51/63 (80.95%), Postives = 58/63 (92.06%), Query Frame = 1 
Query:    7 AQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRNDRDAFKKKSRLLVRKSQD 195
            +QE+A+ERWRPILGVE I++SVISMLSDPNDESPAN+DAAV WRNDR AFKKK R +VRKSQD
Sbjct:  104 SQESADERWRPILGVEQILISVISMLSDPNDESPANLDAAVQWRNDRQAFKKKVRQIVRKSQD 166
[Close]
BLAST of mRNA_M-pyrifera_M_contig68345.16446.1 vs. uniprot
Match: A0A836CP86_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP86_9STRA)

HSP 1 Score: 105 bits (261), Expect = 3.800e-27
Identity = 52/67 (77.61%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:    1 FFAQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRNDRDAFKKKSRLLVRKSQDAL 201
            F  QETAEERWRPILGVE II+SVISMLSDPNDESPANIDAAV WR++RDAFKK+ R  VRKS + +
Sbjct:  101 FNDQETAEERWRPILGVESIIMSVISMLSDPNDESPANIDAAVQWRSERDAFKKRVRKCVRKSHEDM 167
[Close]
BLAST of mRNA_M-pyrifera_M_contig68345.16446.1 vs. uniprot
Match: A0A7S2XJN9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XJN9_9STRA)

HSP 1 Score: 104 bits (260), Expect = 5.390e-27
Identity = 51/63 (80.95%), Postives = 58/63 (92.06%), Query Frame = 1 
Query:    7 AQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRNDRDAFKKKSRLLVRKSQD 195
            +QETA ERWRPILGVE I++SVIS+LSDPNDESPAN+DAAVMWRNDR AFKKK R +VRKSQ+
Sbjct:  103 SQETAMERWRPILGVEQILISVISILSDPNDESPANLDAAVMWRNDRIAFKKKVRQVVRKSQE 165
[Close]
BLAST of mRNA_M-pyrifera_M_contig68345.16446.1 vs. uniprot
Match: A0A7S0GAY0_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GAY0_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.050e-26
Identity = 49/63 (77.78%), Postives = 58/63 (92.06%), Query Frame = 1 
Query:    7 AQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRNDRDAFKKKSRLLVRKSQD 195
            +QETA ERWRPILGVE I+VSV+SMLSDPNDESPAN+DAAVMWRND+ AFKKK + +VRK+Q+
Sbjct:  104 SQETAAERWRPILGVEQILVSVVSMLSDPNDESPANLDAAVMWRNDKAAFKKKVKQIVRKTQE 166
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68345.16446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCV8_ECTSI1.230e-3594.03UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A1Z5KCD4_FISSO5.260e-2983.08Ubiquitin-conjugating enzyme E2 G2 n=1 Tax=Fistuli... [more]
A0A1Z5JLS8_FISSO1.650e-2883.08Ubiquitin-conjugating enzyme E2 G1 n=7 Tax=Bacilla... [more]
A0A7S2LGN5_9STRA1.650e-2884.13Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A067CW50_SAPPC3.230e-2878.46UBC core domain-containing protein n=3 Tax=Saprole... [more]
A0A4D9D8W7_9STRA4.570e-2879.10UBC core domain-containing protein n=1 Tax=Nannoch... [more]
A0A7S3QJH2_9STRA4.820e-2880.95Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A836CP86_9STRA3.800e-2777.61Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
A0A7S2XJN9_9STRA5.390e-2780.95Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S0GAY0_9STRA1.050e-2677.78Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68345contigM-pyrifera_M_contig68345:920..1123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.3
Seed ortholog evalue1.4e-27
Seed eggNOG ortholog2880.D8LCV8
KEGG koko:K10575
KEGG Pathwayko04120,ko04141,ko05012,map04120,map04141,map05012
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031625,GO:0032446,GO:0036211,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0051603,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0070534,GO:0070647,GO:0070936,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0425@2759
Ec32 ortholog descriptionUbiquitin-conjugating enzyme/RWD-like
Ec32 orthologEc-07_007090.1
EC2.3.2.23
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816574.597458-CDS-M-pyrifera_M_contig68345:919..11231622816574.597458-CDS-M-pyrifera_M_contig68345:919..1123Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68345 920..1123 -
1692278055.305122-CDS-M-pyrifera_M_contig68345:919..11231692278055.305122-CDS-M-pyrifera_M_contig68345:919..1123Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68345 920..1123 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68345.16446.1prot_M-pyrifera_M_contig68345.16446.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68345 920..1123 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68345.16446.1

>prot_M-pyrifera_M_contig68345.16446.1 ID=prot_M-pyrifera_M_contig68345.16446.1|Name=mRNA_M-pyrifera_M_contig68345.16446.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
FFAQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRNDRD
AFKKKSRLLVRKSQDAL*
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mRNA from alignment at M-pyrifera_M_contig68345:920..1123-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68345.16446.1 ID=mRNA_M-pyrifera_M_contig68345.16446.1|Name=mRNA_M-pyrifera_M_contig68345.16446.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig68345:920..1123- (Macrocystis pyrifera P11B4 male)
TTTTTCGCACAGGAAACCGCGGAGGAGCGCTGGCGCCCCATTCTCGGGGT
GGAGGGGATCATCGTGAGCGTGATCTCGATGCTCTCGGATCCTAATGACG
AGTCGCCGGCGAACATCGACGCCGCCGTCATGTGGCGAAATGACCGCGAT
GCATTCAAGAAGAAGTCGCGCCTGTTGGTCCGCAAGTCGCAGGACGCCCT
GTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68345:920..1123-

>mRNA_M-pyrifera_M_contig68345.16446.1 ID=mRNA_M-pyrifera_M_contig68345.16446.1|Name=mRNA_M-pyrifera_M_contig68345.16446.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig68345:920..1123- (Macrocystis pyrifera P11B4 male)
TTTTTCGCACAGGAAACCGCGGAGGAGCGCTGGCGCCCCATTCTCGGGGT
GGAGGGGATCATCGTGAGCGTGATCTCGATGCTCTCGGATCCTAATGACG
AGTCGCCGGCGAACATCGACGCCGCCGTCATGTGGCGAAATGACCGCGAT
GCATTCAAGAAGAAGTCGCGCCTGTTGGTCCGCAAGTCGCAGGACGCCCT
GTGATTTTTCGCACAGGAAACCGCGGAGGAGCGCTGGCGCCCCATTCTCG
GGGTGGAGGGGATCATCGTGAGCGTGATCTCGATGCTCTCGGATCCTAAT
GACGAGTCGCCGGCGAACATCGACGCCGCCGTCATGTGGCGAAATGACCG
CGATGCATTCAAGAAGAAGTCGCGCCTGTTGGTCCGCAAGTCGCAGGACG
CCCTGTGA
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