mRNA_M-pyrifera_M_contig68339.16445.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68339.16445.1
Unique NamemRNA_M-pyrifera_M_contig68339.16445.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig68339.16445.1 vs. uniprot
Match: D7FH69_ECTSI (Cathepsin X n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH69_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 1.070e-57
Identity = 85/107 (79.44%), Postives = 95/107 (88.79%), Query Frame = 1
Query:    1 VILNCATDIAGSCHGGTHTGTYEYASNNPVPFDTCQQYQASDNTCDDIGTCKTCWDFDTPCEAVESYPNATVAEYGVVSGEGDMMAEIFARGPIACEIAAGALHEYT 321
            VILNCAT++AGSCHGGTHTGTYEYASNNPVPFDTCQ YQA DNTCD IG CKTCW F+  CEAV+SYPNATV+EYG V GE ++MAE+FARGP+AC+IAA  LHEYT
Sbjct:  124 VILNCATEVAGSCHGGTHTGTYEYASNNPVPFDTCQNYQAEDNTCDAIGKCKTCWSFNEECEAVQSYPNATVSEYGTVVGEENIMAEVFARGPVACDIAASRLHEYT 230          
BLAST of mRNA_M-pyrifera_M_contig68339.16445.1 vs. uniprot
Match: A0A6H5J6W1_9PHAE (Cathepsin X n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6W1_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 2.410e-56
Identity = 84/107 (78.50%), Postives = 93/107 (86.92%), Query Frame = 1
Query:    1 VILNCATDIAGSCHGGTHTGTYEYASNNPVPFDTCQQYQASDNTCDDIGTCKTCWDFDTPCEAVESYPNATVAEYGVVSGEGDMMAEIFARGPIACEIAAGALHEYT 321
            VILNCAT++AGSC+GGTHTGTYEYASNNPVPFDTCQ YQA DNTCD IG CKTCW FD  C AV+SYPNATVAEYG V GE ++MAE+FARGP+AC+I A  LHEYT
Sbjct:  114 VILNCATEVAGSCYGGTHTGTYEYASNNPVPFDTCQNYQAEDNTCDAIGKCKTCWSFDEECAAVQSYPNATVAEYGTVVGEENIMAEVFARGPVACDINASTLHEYT 220          
BLAST of mRNA_M-pyrifera_M_contig68339.16445.1 vs. uniprot
Match: D8LCL2_ECTSI (Cathepsin X n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL2_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 6.350e-56
Identity = 88/107 (82.24%), Postives = 96/107 (89.72%), Query Frame = 1
Query:    1 VILNCATDIAGSCHGGTHTGTYEYASNNPVPFDTCQQYQASDNTCDDIGTCKTCWDFDTPCEAVESYPNATVAEYGVVSGEGDMMAEIFARGPIACEIAAGALHEYT 321
            VILNCAT++AGSCHGG+HTGTYEYASNNPVPFDTCQQYQASDNTCD IG CKTCW+FD  C AVES+PNATVAEYG VSGE D+MAE+FARGP+ACEI A  L EYT
Sbjct:   94 VILNCATELAGSCHGGSHTGTYEYASNNPVPFDTCQQYQASDNTCDAIGKCKTCWNFDEECAAVESFPNATVAEYGTVSGEADIMAEVFARGPVACEIDASPLREYT 200          
BLAST of mRNA_M-pyrifera_M_contig68339.16445.1 vs. uniprot
Match: A0A7S2V244_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V244_9STRA)

HSP 1 Score: 141 bits (355), Expect = 3.920e-39
Identity = 64/107 (59.81%), Postives = 78/107 (72.90%), Query Frame = 1
Query:    1 VILNCATDIAGSCHGGTHTGTYEYASNNPVPFDTCQQYQASDNTCDDIGTCKTCWDFDTPCEAVESYPNATVAEYGVVSGEGDMMAEIFARGPIACEIAAGALHEYT 321
            VILNCA ++AGSCHGG  +G YE+A NN VPFDTCQQY+A D  C     C++C  F + C AV  YPN TV+EYG+V GE +MM EI+ RGPIAC+I +G LH YT
Sbjct:  114 VILNCAQNVAGSCHGGEPSGVYEWAHNNSVPFDTCQQYKAIDEECIPSNICRSCTSFSSDCYAVSQYPNVTVSEYGLVQGEANMMTEIYERGPIACDINSGQLHTYT 220          
BLAST of mRNA_M-pyrifera_M_contig68339.16445.1 vs. uniprot
Match: A0A835YGR9_9STRA (Cathepsin X n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGR9_9STRA)

HSP 1 Score: 140 bits (353), Expect = 3.320e-38
Identity = 64/107 (59.81%), Postives = 76/107 (71.03%), Query Frame = 1
Query:    1 VILNCATDIAGSCHGGTHTGTYEYASNNPVPFDTCQQYQASDNTCDDIGTCKTCWDFDTPCEAVESYPNATVAEYGVVSGEGDMMAEIFARGPIACEIAAGALHEYT 321
            VILNCAT  AGSCHGG   G +E+ + N +PFDTCQQY+A D  C+ +  C+TCW FD  C  V  YPNATVAE+G   GE  +M E+FARGPIAC+I A  LHEYT
Sbjct:  112 VILNCATATAGSCHGGFAKGVFEWGTENAIPFDTCQQYKARDEKCEPLNVCRTCWTFDDTCIPVAPYPNATVAEFGDAVGERAIMKEVFARGPIACDIDADPLHEYT 218          
BLAST of mRNA_M-pyrifera_M_contig68339.16445.1 vs. uniprot
Match: A0A7S2RSF5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RSF5_9STRA)

HSP 1 Score: 124 bits (311), Expect = 7.700e-32
Identity = 60/119 (50.42%), Postives = 79/119 (66.39%), Query Frame = 1
Query:    4 ILNCATDIAGSCHGGTHTGTYEYASNNP-VPFDTCQQYQAS------------DNTCDDIGTCKTCWDFDTPCEAVESYPNATVAEYGVVSGEGDMMAEIFARGPIACEIAAGALHEYT 321
            ILNC +D+AGSC+GG+ +GTY+   +   VP+DTCQ Y A             D TC  I TC+TC  F   C A++ +PNA++AEYG +SGE DM+AEI+ARGPIAC I A  +H+YT
Sbjct:  155 ILNCGSDVAGSCYGGSGSGTYQLVKDTGYVPYDTCQPYLACSSDSAEGFCGSVDTTCSAINTCRTCSTFGVDCAAIDVFPNASIAEYGTISGEEDMLAEIYARGPIACSIDATPIHDYT 273          
BLAST of mRNA_M-pyrifera_M_contig68339.16445.1 vs. uniprot
Match: A0A0H5QKS6_9EUKA (Cathepsin X n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QKS6_9EUKA)

HSP 1 Score: 116 bits (290), Expect = 3.290e-29
Identity = 56/107 (52.34%), Postives = 70/107 (65.42%), Query Frame = 1
Query:    1 VILNCATDIAGSCHGGTHTGTYEYASNNPVPFDTCQQYQASDNTCDDIGTCKTCWDFDTPCEAVESYPNATVAEYGVVSGEGDMMAEIFARGPIACEIAAGALHEYT 321
            VILNC T +AGSC GG   G YE+  ++ +P DTCQQY+A D+ C +I  C+ C      C  V  YP+  V EYG VSGE  MMAEI+ARGPIAC++ A +L  YT
Sbjct:  113 VILNCGTHVAGSCDGGESGGVYEWVHDHGIPEDTCQQYKAEDDECTNINKCRNCDPLTNICSPVNKYPSWFVDEYGEVSGEHRMMAEIYARGPIACQVDATSLETYT 219          
BLAST of mRNA_M-pyrifera_M_contig68339.16445.1 vs. uniprot
Match: A0A7S0QTS4_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QTS4_9CHLO)

HSP 1 Score: 117 bits (292), Expect = 4.050e-29
Identity = 63/122 (51.64%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    4 ILNCATDIAGSCHGGTHTGTYEYASNNP-VPFDTCQQYQA------------SDNTCDDIGTCKTCWDFDTP---CEAVESYPNATVAEYGVVSGEGDMMAEIFARGPIACEIAAGALHEYT 321
            ILNC   IAGSCHGG+HTG Y +   +  VP+DTC  Y+A             D TC  I TC+TC  F      C  V+ +PNAT++EYG VSGE  MMAEI+ARGPIACEI A  L +YT
Sbjct:  150 ILNCGAGIAGSCHGGSHTGVYHFIKQSGFVPYDTCLVYEACSQESTEGTCGGGDYTCKPINTCRTCSTFSKFGGFCSEVDEFPNATISEYGRVSGEAKMMAEIYARGPIACEIDATPLDDYT 271          
BLAST of mRNA_M-pyrifera_M_contig68339.16445.1 vs. uniprot
Match: A0A0L0G2H7_9EUKA (Cathepsin X n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G2H7_9EUKA)

HSP 1 Score: 115 bits (287), Expect = 1.890e-28
Identity = 61/122 (50.00%), Postives = 73/122 (59.84%), Query Frame = 1
Query:    4 ILNCATDIAGSCHGGTHTGTYEYASN--NPVPFDTCQQYQAS------------DNTCDDIGTCKTCWDFDTP---CEAVESYPNATVAEYGVVSGEGDMMAEIFARGPIACEIAAGALHEY 318
            ILNC TD+AGSCHGG+HTG Y +  N    +P+DTC QY+A             D TC    TC+TC  F      C  V+ YPNAT+AEYG V GE +MMAEI+ RGPIAC I A  +  Y
Sbjct:  138 ILNCGTDVAGSCHGGSHTGAYNFVKNYAKHIPYDTCLQYEACSAESTEGTCKDRDFTCTGANTCRTCSTFTAYGGFCSEVDRYPNATIAEYGNVVGEYNMMAEIYRRGPIACGIDASPVDNY 259          
BLAST of mRNA_M-pyrifera_M_contig68339.16445.1 vs. uniprot
Match: A4RRS0_OSTLU (Pept_C1 domain-containing protein n=2 Tax=Ostreococcus TaxID=70447 RepID=A4RRS0_OSTLU)

HSP 1 Score: 112 bits (281), Expect = 6.610e-28
Identity = 59/122 (48.36%), Postives = 78/122 (63.93%), Query Frame = 1
Query:    4 ILNCATDIAGSCHGGTHTGTYEYASNNP-VPFDTCQQYQA-------------SDNTCDDIGTCKTCW---DFDTPCEAVESYPNATVAEYGVVSGEGDMMAEIFARGPIACEIAAGALHEY 318
            ILNC T+IAGSCHGG+HTG Y++  +   VP+DTC  Y+A              D TC  + TC+TC    +F   C A+ ++PNATVAEYG++SGE ++MAEIFARGP++  I A  L  Y
Sbjct:   86 ILNCGTEIAGSCHGGSHTGAYQFVHDTGFVPYDTCLPYEACSAESTEGNCARGGDYTCTAMNTCRTCSTFAEFGGFCSALSTFPNATVAEYGMISGEKEIMAEIFARGPVSAGIDADGLRGY 207          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68339.16445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH69_ECTSI1.070e-5779.44Cathepsin X n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5J6W1_9PHAE2.410e-5678.50Cathepsin X n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LCL2_ECTSI6.350e-5682.24Cathepsin X n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A7S2V244_9STRA3.920e-3959.81Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A835YGR9_9STRA3.320e-3859.81Cathepsin X n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A7S2RSF5_9STRA7.700e-3250.42Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0H5QKS6_9EUKA3.290e-2952.34Cathepsin X n=1 Tax=Spongospora subterranea TaxID=... [more]
A0A7S0QTS4_9CHLO4.050e-2951.64Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A0L0G2H7_9EUKA1.890e-2850.00Cathepsin X n=1 Tax=Sphaeroforma arctica JP610 Tax... [more]
A4RRS0_OSTLU6.610e-2848.36Pept_C1 domain-containing protein n=2 Tax=Ostreoco... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68339contigM-pyrifera_M_contig68339:199..1091 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.8
Seed ortholog evalue5.4e-48
Seed eggNOG ortholog2880.D8LCL2
KEGG koko:K08568
KEGG Pathwayko04142,ko04210,map04142,map04210
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transferase activity, transferring glycosyl groups
EggNOG OGsCOG4870@1,KOG1543@2759
EC3.4.18.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons2
Model size339
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816574.554444-CDS-M-pyrifera_M_contig68339:198..3721622816574.554444-CDS-M-pyrifera_M_contig68339:198..372Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68339 199..372 -
1692278055.2804463-CDS-M-pyrifera_M_contig68339:198..3721692278055.2804463-CDS-M-pyrifera_M_contig68339:198..372Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68339 199..372 -
1622816574.5662856-CDS-M-pyrifera_M_contig68339:926..10911622816574.5662856-CDS-M-pyrifera_M_contig68339:926..1091Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68339 927..1091 -
1692278055.292302-CDS-M-pyrifera_M_contig68339:926..10911692278055.292302-CDS-M-pyrifera_M_contig68339:926..1091Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68339 927..1091 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68339.16445.1prot_M-pyrifera_M_contig68339.16445.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68339 199..1091 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68339.16445.1

>prot_M-pyrifera_M_contig68339.16445.1 ID=prot_M-pyrifera_M_contig68339.16445.1|Name=mRNA_M-pyrifera_M_contig68339.16445.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
VILNCATDIAGSCHGGTHTGTYEYASNNPVPFDTCQQYQASDNTCDDIGT
CKTCWDFDTPCEAVESYPNATVAEYGVVSGEGDMMAEIFARGPIACEIAA
GALHEYTVSQAV*
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mRNA from alignment at M-pyrifera_M_contig68339:199..1091-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68339.16445.1 ID=mRNA_M-pyrifera_M_contig68339.16445.1|Name=mRNA_M-pyrifera_M_contig68339.16445.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=893bp|location=Sequence derived from alignment at M-pyrifera_M_contig68339:199..1091- (Macrocystis pyrifera P11B4 male)
GTGATCCTTAACTGCGCTACGGATATTGCGGGGTCATGCCATGGCGGTAC TCACACGGGAACGTACGAGTACGCCTCGAACAACCCTGTCCCGTTTGACA CCTGCCAGCAGTACCAGGCTTCGGACAACACTTGCGACGACATCGGGACG TGCAAGACCTGCTGGGTATGGTTTTAATATATGCATTCCATGTCCCCCTA ACCTATCACGCCCTTTTATACATAGGTTCAGTGCCGCTTCACAAATCCTA TATTTCCTTCGTTCAATTTTCCCATGTATTACGAATATTGTGCAAATTTC CCCTTAGGGATGTGGTTGACTTGAAATCTCGGGGGTGTCGCAAGTTGAAA GGGGGGGAATCATGATTAGGCATCCCTATCTACTCCGAGTAGTACTGTGG TACTGCTGCTATGTTGCAGGATGCGGTTCGACGACGGGTTGTTTGATTTC CAGAATGGTTTTTTTAACATGTTGATGAGTTTGGGTGCATATTGTAAGTA TATCCTAGTGAATACTGCACACACCGCGACTGTCACAAAGGCCAAATGTT GCTTTTGTACCGCTGCTGTTTTTGTAGTGTGTACCATGGAAATCACGAGG AAGCGTGGGTTTACCCAATACCACCACCATCAACACCAACACGACAAAAC CAACAACACCACCACCACCGTCATCGCCATCTAACGTTCGTCACCGGTTT ACCACCGACGATCGTGCAGGACTTCGATACTCCCTGCGAGGCTGTCGAAA GCTACCCTAACGCTACGGTGGCGGAGTACGGGGTTGTGTCGGGGGAAGGC GACATGATGGCCGAGATTTTCGCTCGCGGTCCTATTGCCTGCGAAATCGC CGCGGGAGCGCTCCACGAGTACACGGTGAGTCAAGCCGTTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68339:199..1091-

>mRNA_M-pyrifera_M_contig68339.16445.1 ID=mRNA_M-pyrifera_M_contig68339.16445.1|Name=mRNA_M-pyrifera_M_contig68339.16445.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig68339:199..1091- (Macrocystis pyrifera P11B4 male)
GTGATCCTTAACTGCGCTACGGATATTGCGGGGTCATGCCATGGCGGTAC
TCACACGGGAACGTACGAGTACGCCTCGAACAACCCTGTCCCGTTTGACA
CCTGCCAGCAGTACCAGGCTTCGGACAACACTTGCGACGACATCGGGACG
TGCAAGACCTGCTGGGTGATCCTTAACTGCGCTACGGATATTGCGGGGTC
ATGCCATGGCGGTACTCACACGGGAACGTACGAGTACGCCTCGAACAACC
CTGTCCCGTTTGACACCTGCCAGCAGTACCAGGCTTCGGACAACACTTGC
GACGACATCGGGACGTGCAAGACCTGCTGGGACTTCGATACTCCCTGCGA
GGCTGTCGAAAGCTACCCTAACGCTACGGTGGCGGAGTACGGGGTTGTGT
CGGGGGAAGGCGACATGATGGCCGAGATTTTCGCTCGCGGTCCTATTGCC
TGCGAAATCGCCGCGGGAGCGCTCCACGAGTACACGGTGAGTCAAGCCGT
TTGAGACTTCGATACTCCCTGCGAGGCTGTCGAAAGCTACCCTAACGCTA
CGGTGGCGGAGTACGGGGTTGTGTCGGGGGAAGGCGACATGATGGCCGAG
ATTTTCGCTCGCGGTCCTATTGCCTGCGAAATCGCCGCGGGAGCGCTCCA
CGAGTACACGGTGAGTCAAGCCGTTTGA
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