mRNA_M-pyrifera_M_contig68322.16441.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68322.16441.1
Unique NamemRNA_M-pyrifera_M_contig68322.16441.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig68322.16441.1 vs. uniprot
Match: UPI001457F1EF (telomerase reverse transcriptase-like isoform X2 n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001457F1EF)

HSP 1 Score: 61.2 bits (147), Expect = 3.410e-8
Identity = 32/69 (46.38%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:    7 LTEQRPRPSRSLQQLRADLKAHITQHLLRFSGRTYHQRVGLPQGSILSTLLCNLFYGAFEAKELLPAIQ 213
            +T Q  + S  LQQL    K+H++ +L++   R YHQ  G+ QGSILST+LCN++YG  E KEL P ++
Sbjct:  393 VTSQSEKSSNLLQQL----KSHLSNNLIKVGRRYYHQTSGISQGSILSTMLCNIYYGCLE-KELFPPLE 456
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BLAST of mRNA_M-pyrifera_M_contig68322.16441.1 vs. uniprot
Match: UPI0014584FBD (telomerase reverse transcriptase-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI0014584FBD)

HSP 1 Score: 61.2 bits (147), Expect = 3.430e-8
Identity = 32/69 (46.38%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:    7 LTEQRPRPSRSLQQLRADLKAHITQHLLRFSGRTYHQRVGLPQGSILSTLLCNLFYGAFEAKELLPAIQ 213
            +T Q  + S  LQQL    K+H++ +L++   R YHQ  G+ QGSILST+LCN++YG  E KEL P ++
Sbjct:  420 VTSQSEKSSNLLQQL----KSHLSNNLIKVGRRYYHQTSGISQGSILSTMLCNIYYGCLE-KELFPPLE 483
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BLAST of mRNA_M-pyrifera_M_contig68322.16441.1 vs. uniprot
Match: UPI001457FDDC (telomerase reverse transcriptase-like isoform X1 n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001457FDDC)

HSP 1 Score: 61.2 bits (147), Expect = 3.510e-8
Identity = 32/69 (46.38%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:    7 LTEQRPRPSRSLQQLRADLKAHITQHLLRFSGRTYHQRVGLPQGSILSTLLCNLFYGAFEAKELLPAIQ 213
            +T Q  + S  LQQL    K+H++ +L++   R YHQ  G+ QGSILST+LCN++YG  E KEL P ++
Sbjct:  621 VTSQSEKSSNLLQQL----KSHLSNNLIKVGRRYYHQTSGISQGSILSTMLCNIYYGCLE-KELFPPLE 684
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BLAST of mRNA_M-pyrifera_M_contig68322.16441.1 vs. uniprot
Match: A0A0K3CBH3_RHOTO (Telomerase reverse transcriptase n=3 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A0K3CBH3_RHOTO)

HSP 1 Score: 60.8 bits (146), Expect = 4.850e-8
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    1 VLLTEQRPRPSRSLQQLRADLKAHITQHLLRFSGRTYHQRVGLPQGSILSTLLCNLFYGAFEAKEL 198
            V+L++Q    S +  +L   L+ HIT +L++ SGR Y Q+ G+PQGSI+S+LLC LFYG  E ++L
Sbjct:  809 VVLSDQVTYTSVARDRLMHLLREHITTNLVKVSGRLYRQKTGIPQGSIMSSLLCALFYGDMERRKL 874
[Close]
BLAST of mRNA_M-pyrifera_M_contig68322.16441.1 vs. uniprot
Match: UPI001FB179FD (telomerase reverse transcriptase isoform X1 n=2 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB179FD)

HSP 1 Score: 60.5 bits (145), Expect = 6.630e-8
Identity = 26/52 (50.00%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:   61 LKAHITQHLLRFSGRTYHQRVGLPQGSILSTLLCNLFYGAFEAKELLPAIQS 216
            LK H+  ++LRF+ + Y Q +G+PQGSILS+LLC+ +YG  E   LLP ++S
Sbjct:  854 LKEHVNNNILRFNKKFYKQNIGIPQGSILSSLLCSFYYGHMENSILLPFLKS 905
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BLAST of mRNA_M-pyrifera_M_contig68322.16441.1 vs. uniprot
Match: A0A2R6XL99_MARPO (Telomerase reverse transcriptase n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XL99_MARPO)

HSP 1 Score: 60.5 bits (145), Expect = 6.780e-8
Identity = 27/58 (46.55%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:   61 LKAHITQHLLRFSGRTYHQRVGLPQGSILSTLLCNLFYGAFEAKELLPAIQSATSSPL 234
            L+ HI  ++++   + Y Q VG+PQGSILS++LC+LFYG FE + L+P +QS  +  L
Sbjct: 1361 LEEHIKNNIVQMGKQFYKQTVGIPQGSILSSILCSLFYGHFELQRLMPHLQSRLTEKL 1418
[Close]
BLAST of mRNA_M-pyrifera_M_contig68322.16441.1 vs. uniprot
Match: K2RPW0_MACPH (Telomerase reverse transcriptase n=1 Tax=Macrophomina phaseolina (strain MS6) TaxID=1126212 RepID=K2RPW0_MACPH)

HSP 1 Score: 60.1 bits (144), Expect = 8.910e-8
Identity = 42/128 (32.81%), Postives = 60/128 (46.88%), Query Frame = 1 
Query:   34 RSLQQLRADLKAHITQHLLRFSGRTYHQRVGLPQGSILSTLLCNLFYGAFEAKELLPAIQSATSSPLPPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLRVLSGGSHRYGAKSRLDKTKTNFD 417
            RS ++L   L  HI +++++   + Y QRVG+PQGSILS+LLCN FY   E  ELL  +  +TS  L                                    L+++  G+ R+G   + DKT TNFD
Sbjct:  844 RSRKELMKLLGEHIERNIIKIGKKFYRQRVGIPQGSILSSLLCNFFYAKMET-ELLDFLADSTSVLL-----------------RLIDDSLLITTEREHAERFLQIMHKGNDRFGISIKKDKTLTNFD 953
[Close]
BLAST of mRNA_M-pyrifera_M_contig68322.16441.1 vs. uniprot
Match: A0A2G9I2A4_9LAMI (Telomerase reverse transcriptase n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9I2A4_9LAMI)

HSP 1 Score: 60.1 bits (144), Expect = 9.020e-8
Identity = 30/76 (39.47%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:    1 VLLTEQRPRPSRSLQQLRADLKAHITQHLLRFSGRTYHQRVGLPQGSILSTLLCNLFYGAFEAKELLPAIQSATSS 228
            VL+ +   R +R  ++L+  L+ HIT+++++     Y QRVG+PQGS+LS+LLC+ +YG  E   LLP ++ A+ +
Sbjct:  816 VLVKKSLSRKTRK-EELKLLLEEHITRNVVQLGNNFYLQRVGIPQGSVLSSLLCSFYYGDMERNVLLPFLEKASEN 890
[Close]
BLAST of mRNA_M-pyrifera_M_contig68322.16441.1 vs. uniprot
Match: A0A511KCZ0_RHOTO (Telomerase reverse transcriptase n=1 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A511KCZ0_RHOTO)

HSP 1 Score: 59.7 bits (143), Expect = 1.230e-7
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    1 VLLTEQRPRPSRSLQQLRADLKAHITQHLLRFSGRTYHQRVGLPQGSILSTLLCNLFYGAFEAKEL 198
            V+L++Q    S +  +L   L+ HIT +L++ SG  Y Q+ G+PQGSILS+LLC LFYG  E ++L
Sbjct:  901 VVLSDQVAYTSVARDRLMHLLREHITTNLVKVSGHLYRQKTGIPQGSILSSLLCALFYGDMERRKL 966
[Close]
BLAST of mRNA_M-pyrifera_M_contig68322.16441.1 vs. uniprot
Match: A0A1Q3EPP4_LENED (Telomerase reverse transcriptase n=1 Tax=Lentinula edodes TaxID=5353 RepID=A0A1Q3EPP4_LENED)

HSP 1 Score: 59.3 bits (142), Expect = 1.640e-7
Identity = 42/141 (29.79%), Postives = 61/141 (43.26%), Query Frame = 1 
Query:    1 VLLTEQRPRPSRSLQQLRADLKAHITQHLLRFSGRTYHQRVGLPQGSILSTLLCNLFYGAFEAKELLPAIQSATSSPLPPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLRVLSGGSHRYGAKSRLDKTKTNFDRE 423
            V+  +Q   PS   Q +   L+ HIT+++++     Y Q VG+PQGS+LS++LC+ FYG  E +   P   + T S L                                    LRV++ G   YG     DKT TNFD +
Sbjct:  586 VIFVDQVIYPSTKAQTVLELLEQHITENIVKIGAAYYRQVVGIPQGSVLSSILCSFFYGDLERQPDFPDFVNDTQSLL----------------MRHTDDYLLITADLSKAKEFLRVMNKGHPEYGCFVSRDKTLTNFDHD 710
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68322.16441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001457F1EF3.410e-846.38telomerase reverse transcriptase-like isoform X2 n... [more]
UPI0014584FBD3.430e-846.38telomerase reverse transcriptase-like n=1 Tax=Pect... [more]
UPI001457FDDC3.510e-846.38telomerase reverse transcriptase-like isoform X1 n... [more]
A0A0K3CBH3_RHOTO4.850e-846.97Telomerase reverse transcriptase n=3 Tax=Rhodospor... [more]
UPI001FB179FD6.630e-850.00telomerase reverse transcriptase isoform X1 n=2 Ta... [more]
A0A2R6XL99_MARPO6.780e-846.55Telomerase reverse transcriptase n=3 Tax=Marchanti... [more]
K2RPW0_MACPH8.910e-832.81Telomerase reverse transcriptase n=1 Tax=Macrophom... [more]
A0A2G9I2A4_9LAMI9.020e-839.47Telomerase reverse transcriptase n=1 Tax=Handroant... [more]
A0A511KCZ0_RHOTO1.230e-746.97Telomerase reverse transcriptase n=1 Tax=Rhodospor... [more]
A0A1Q3EPP4_LENED1.640e-729.79Telomerase reverse transcriptase n=1 Tax=Lentinula... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68322contigM-pyrifera_M_contig68322:577..999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score64.3
Seed ortholog evalue5.2e-08
Seed eggNOG ortholog35725.K2RPW0
Preferred nameEST2
KEGG koko:K11126
KEGG Pathwayko05165,ko05166,ko05200,ko05225,ko05226,map05165,map05166,map05200,map05225,map05226
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000333,GO:0000723,GO:0000781,GO:0000782,GO:0000784,GO:0001302,GO:0003674,GO:0003676,GO:0003677,GO:0003720,GO:0003721,GO:0003723,GO:0003824,GO:0003964,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005697,GO:0005730,GO:0006139,GO:0006259,GO:0006278,GO:0006725,GO:0006807,GO:0006996,GO:0007004,GO:0007568,GO:0007569,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010833,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022616,GO:0022618,GO:0031974,GO:0031981,GO:0032200,GO:0032502,GO:0032991,GO:0032993,GO:0034061,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0042162,GO:0042575,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048869,GO:0051276,GO:0060249,GO:0061695,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070034,GO:0071704,GO:0071826,GO:0071840,GO:0071897,GO:0090304,GO:0097159,GO:0098687,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1904868,GO:1905323,GO:1990234,GO:1990904
EggNOG free text desc.Telomerase reverse transcriptase
EggNOG OGs39QU0@33154,3NVFF@4751,3QNTI@4890,KOG1005@1,KOG1005@2759
EC2.7.7.49
COG Functional cat.BL
Best tax levelAscomycota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032
Exons1
Model size423
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816574.2777126-CDS-M-pyrifera_M_contig68322:576..9991622816574.2777126-CDS-M-pyrifera_M_contig68322:576..999Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68322 577..999 -
1692278055.1562462-CDS-M-pyrifera_M_contig68322:576..9991692278055.1562462-CDS-M-pyrifera_M_contig68322:576..999Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68322 577..999 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68322.16441.1prot_M-pyrifera_M_contig68322.16441.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68322 577..999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68322.16441.1

>prot_M-pyrifera_M_contig68322.16441.1 ID=prot_M-pyrifera_M_contig68322.16441.1|Name=mRNA_M-pyrifera_M_contig68322.16441.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
VLLTEQRPRPSRSLQQLRADLKAHITQHLLRFSGRTYHQRVGLPQGSILS
TLLCNLFYGAFEAKELLPAIQSATSSPLPPTSSLPPPPPALSALLRLTDD
YLLLTTDPRAAAVLLRVLSGGSHRYGAKSRLDKTKTNFDRE
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mRNA from alignment at M-pyrifera_M_contig68322:577..999-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68322.16441.1 ID=mRNA_M-pyrifera_M_contig68322.16441.1|Name=mRNA_M-pyrifera_M_contig68322.16441.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig68322:577..999- (Macrocystis pyrifera P11B4 male)
GTCCTTCTCACTGAACAACGACCACGTCCTTCACGCTCTTTGCAACAACT
TCGAGCTGATCTCAAAGCTCATATCACACAGCACTTGCTCCGTTTCAGTG
GGCGTACATATCACCAGCGTGTGGGTCTTCCTCAAGGCTCTATCCTTTCC
ACTCTCTTGTGTAACCTGTTTTATGGTGCATTTGAAGCCAAAGAACTCTT
ACCTGCGATTCAATCTGCCACATCTTCTCCACTCCCTCCCACCTCTTCAC
TACCACCACCACCACCAGCATTGTCTGCATTGCTTCGCCTGACGGATGAT
TATTTGTTGCTTACTACGGATCCAAGAGCTGCTGCAGTGTTGTTGCGAGT
GTTGTCAGGAGGATCGCATCGGTATGGAGCAAAGTCACGACTCGATAAGA
CAAAGACAAACTTTGATCGAGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68322:577..999-

>mRNA_M-pyrifera_M_contig68322.16441.1 ID=mRNA_M-pyrifera_M_contig68322.16441.1|Name=mRNA_M-pyrifera_M_contig68322.16441.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig68322:577..999- (Macrocystis pyrifera P11B4 male)
GTCCTTCTCACTGAACAACGACCACGTCCTTCACGCTCTTTGCAACAACT
TCGAGCTGATCTCAAAGCTCATATCACACAGCACTTGCTCCGTTTCAGTG
GGCGTACATATCACCAGCGTGTGGGTCTTCCTCAAGGCTCTATCCTTTCC
ACTCTCTTGTGTAACCTGTTTTATGGTGCATTTGAAGCCAAAGAACTCTT
ACCTGCGATTCAATCTGCCACATCTTCTCCACTCCCTCCCACCTCTTCAC
TACCACCACCACCACCAGCATTGTCTGCATTGCTTCGCCTGACGGATGAT
TATTTGTTGCTTACTACGGATCCAAGAGCTGCTGCAGTGTTGTTGCGAGT
GTTGTCAGGAGGATCGCATCGGTATGGAGCAAAGTCACGACTCGATAAGA
CAAAGACAAACTTTGATCGAGAAGTCCTTCTCACTGAACAACGACCACGT
CCTTCACGCTCTTTGCAACAACTTCGAGCTGATCTCAAAGCTCATATCAC
ACAGCACTTGCTCCGTTTCAGTGGGCGTACATATCACCAGCGTGTGGGTC
TTCCTCAAGGCTCTATCCTTTCCACTCTCTTGTGTAACCTGTTTTATGGT
GCATTTGAAGCCAAAGAACTCTTACCTGCGATTCAATCTGCCACATCTTC
TCCACTCCCTCCCACCTCTTCACTACCACCACCACCACCAGCATTGTCTG
CATTGCTTCGCCTGACGGATGATTATTTGTTGCTTACTACGGATCCAAGA
GCTGCTGCAGTGTTGTTGCGAGTGTTGTCAGGAGGATCGCATCGGTATGG
AGCAAAGTCACGACTCGATAAGACAAAGACAAACTTTGATCGAGAA
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