mRNA_M-pyrifera_M_contig68222.16431.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68222.16431.1
Unique NamemRNA_M-pyrifera_M_contig68222.16431.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig68222.16431.1 vs. uniprot
Match: K3WSU9_GLOUD (40S ribosomal protein S21 n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WSU9_GLOUD)

HSP 1 Score: 102 bits (253), Expect = 9.860e-27
Identity = 43/76 (56.58%), Postives = 62/76 (81.58%), Query Frame = 1
Query:    4 MQNASGENVELYIPRKCSWTNRLIAAKDHGAIQLNVGVVDGSGILTDKLLTYALAGKVRERGESDLALTELVTRDD 231
            MQN +GE++++YIPRKCSWTNR++AAKDH ++Q+NV  V+ +G+ T +  T+ALAG +R +GE+DLALTEL  + D
Sbjct:    1 MQNEAGESIDIYIPRKCSWTNRILAAKDHASVQINVARVNANGVFTGESDTFALAGYIRSKGEADLALTELARQAD 76          
BLAST of mRNA_M-pyrifera_M_contig68222.16431.1 vs. uniprot
Match: G4ZUD9_PHYSP (40S ribosomal protein S21 n=7 Tax=Peronosporaceae TaxID=4777 RepID=G4ZUD9_PHYSP)

HSP 1 Score: 100 bits (250), Expect = 2.830e-26
Identity = 42/76 (55.26%), Postives = 60/76 (78.95%), Query Frame = 1
Query:    4 MQNASGENVELYIPRKCSWTNRLIAAKDHGAIQLNVGVVDGSGILTDKLLTYALAGKVRERGESDLALTELVTRDD 231
            MQN +G+++++YIPRKCSWTNR++AAKDH ++Q+NVG V+ +G+ T +  TYALAG +R  GE D A+TEL  + D
Sbjct:    1 MQNEAGQSIDIYIPRKCSWTNRILAAKDHASVQINVGRVNANGVFTGESDTYALAGYIRHHGEGDQAITELARQTD 76          
BLAST of mRNA_M-pyrifera_M_contig68222.16431.1 vs. uniprot
Match: A0A0P1AAL2_PLAHL (40S ribosomal protein S21 n=16 Tax=Peronosporaceae TaxID=4777 RepID=A0A0P1AAL2_PLAHL)

HSP 1 Score: 99.8 bits (247), Expect = 8.100e-26
Identity = 41/76 (53.95%), Postives = 61/76 (80.26%), Query Frame = 1
Query:    4 MQNASGENVELYIPRKCSWTNRLIAAKDHGAIQLNVGVVDGSGILTDKLLTYALAGKVRERGESDLALTELVTRDD 231
            MQN +G+++++YIPRKCSWTNR++AAKDH ++Q+NVG V+ +G+ T +  T+ALAG +R  GE D+A+TEL  + D
Sbjct:    1 MQNEAGQSIDIYIPRKCSWTNRILAAKDHASVQINVGRVNANGVFTGESDTFALAGYIRHHGEGDIAITELSRQAD 76          
BLAST of mRNA_M-pyrifera_M_contig68222.16431.1 vs. uniprot
Match: B8BZU9_THAPS (40S ribosomal protein S21 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZU9_THAPS)

HSP 1 Score: 99.8 bits (247), Expect = 9.310e-26
Identity = 46/82 (56.10%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    4 MQNASGENVELYIPRKCSWTNRLIAAKDHGAIQLNVGVVDG-SGILTDKLLTYALAGKVRERGESDLALTELVTRDDRAMRE 246
            MQN +GENV+LYIPRKCSWTNRLI AKDHG++Q+NV  VD  +G+ T +   YA+AG +R++ E D+A T LV  +D+ + E
Sbjct:    1 MQNENGENVDLYIPRKCSWTNRLIRAKDHGSVQINVANVDPVTGLFTGESTAYAMAGYIRDKSEGDMAFTALVEANDKKVLE 82          
BLAST of mRNA_M-pyrifera_M_contig68222.16431.1 vs. uniprot
Match: A0A812Q5U2_9DINO (40S ribosomal protein S21 n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812Q5U2_9DINO)

HSP 1 Score: 99.4 bits (246), Expect = 1.150e-25
Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 1
Query:    4 MQNASGENVELYIPRKCSWTNRLIAAKDHGAIQLNVGVVDGS-GILTDKLLTYALAGKVRERGESDLALTELVTRDDRA 237
            MQ+ASGE V+LYIPRKCSWTNRLIAAKDH ++Q+NV  +D + G       TYAL G +R +GE+DLALTELV + D A
Sbjct:    1 MQSASGEKVDLYIPRKCSWTNRLIAAKDHASVQINVADIDPTTGKYEGDYQTYALCGFIRAKGEADLALTELVAKADSA 79          
BLAST of mRNA_M-pyrifera_M_contig68222.16431.1 vs. uniprot
Match: A0A2D4BKA2_PYTIN (40S ribosomal protein S21 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKA2_PYTIN)

HSP 1 Score: 99.0 bits (245), Expect = 1.630e-25
Identity = 42/76 (55.26%), Postives = 62/76 (81.58%), Query Frame = 1
Query:    4 MQNASGENVELYIPRKCSWTNRLIAAKDHGAIQLNVGVVDGSGILTDKLLTYALAGKVRERGESDLALTELVTRDD 231
            MQNA+G+N+++YIPRKCSWTNR+IAAKDH ++QL++  V+ +G+ T +  + ALAG +R +GESD+A+TEL  + D
Sbjct:    1 MQNAAGQNIDIYIPRKCSWTNRIIAAKDHASVQLSIARVNANGVYTGETDSIALAGYIRGKGESDMAVTELARQID 76          
BLAST of mRNA_M-pyrifera_M_contig68222.16431.1 vs. uniprot
Match: A0A067BLB8_SAPPC (40S ribosomal protein S21 n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BLB8_SAPPC)

HSP 1 Score: 97.8 bits (242), Expect = 4.680e-25
Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = 1
Query:    4 MQNASGENVELYIPRKCSWTNRLIAAKDHGAIQLNVGVVDGSGILTDKLLTYALAGKVRERGESDLALTELVTR 225
            MQN +G+N++LYIPRKCSWTNR++AAKDH ++Q+ V  VD +G+ T     YALAG +R +GE D ALTEL  R
Sbjct:    1 MQNLAGQNIDLYIPRKCSWTNRILAAKDHASVQIAVAQVDANGVYTGHNDVYALAGYIRNKGEGDHALTELARR 74          
BLAST of mRNA_M-pyrifera_M_contig68222.16431.1 vs. uniprot
Match: W7TTZ6_9STRA (40S ribosomal protein S21 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTZ6_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 6.830e-25
Identity = 45/77 (58.44%), Postives = 60/77 (77.92%), Query Frame = 1
Query:    4 MQNASGENVELYIPRKCSWTNRLIAAKDHGAIQLNVGVVDGSGI-LTDKLLTYALAGKVRERGESDLALTELVTRDD 231
            MQN +G+NV+LYIPRKCSWTNR+I +KDH A+Q+NV  VD SG+ L   L T A+AG +R +GE+D A+TE+V + D
Sbjct:    1 MQNEAGQNVDLYIPRKCSWTNRVIHSKDHAAVQVNVANVDASGVYLQGDLKTIAMAGYIRAKGEADAAMTEMVKKAD 77          
BLAST of mRNA_M-pyrifera_M_contig68222.16431.1 vs. uniprot
Match: F0WM79_9STRA (40S ribosomal protein S21 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WM79_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 9.980e-25
Identity = 41/72 (56.94%), Postives = 59/72 (81.94%), Query Frame = 1
Query:    4 MQNASGENVELYIPRKCSWTNRLIAAKDHGAIQLNVGVVDGSGILTDKLLTYALAGKVRERGESDLALTELV 219
            MQN +G+N+++YIPRKCSWTNR+IAAKD  ++Q+++G V+  G+ T +  T+ALAG +R +GESD+ALTEL 
Sbjct:    1 MQNEAGQNIDIYIPRKCSWTNRIIAAKDQSSVQISIGRVNEHGLFTGESDTFALAGYIRGKGESDMALTELA 72          
BLAST of mRNA_M-pyrifera_M_contig68222.16431.1 vs. uniprot
Match: A0A7S3FP24_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FP24_9CHLO)

HSP 1 Score: 97.8 bits (242), Expect = 1.060e-24
Identity = 46/80 (57.50%), Postives = 56/80 (70.00%), Query Frame = 1
Query:    1 SMQNASGENVELYIPRKCSWTNRLIAAKDHGAIQLNVGVVDGSGILTDKLLTYALAGKVRERGESDLALTELVTRDDRAM 240
            +M N  G+NV+LYIPRKCSW+NRLI AKDH AIQLNVG +D  G+ T K  T+A+ G VR RGESD  L  L ++    M
Sbjct:   27 TMINDEGQNVDLYIPRKCSWSNRLIGAKDHSAIQLNVGHLDDKGVYTGKYTTFAIGGAVRHRGESDSGLDHLWSKKKAEM 106          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68222.16431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K3WSU9_GLOUD9.860e-2756.5840S ribosomal protein S21 n=2 Tax=Pythiaceae TaxID... [more]
G4ZUD9_PHYSP2.830e-2655.2640S ribosomal protein S21 n=7 Tax=Peronosporaceae ... [more]
A0A0P1AAL2_PLAHL8.100e-2653.9540S ribosomal protein S21 n=16 Tax=Peronosporaceae... [more]
B8BZU9_THAPS9.310e-2656.1040S ribosomal protein S21 n=1 Tax=Thalassiosira ps... [more]
A0A812Q5U2_9DINO1.150e-2562.0340S ribosomal protein S21 n=1 Tax=Symbiodinium sp.... [more]
A0A2D4BKA2_PYTIN1.630e-2555.2640S ribosomal protein S21 n=1 Tax=Pythium insidios... [more]
A0A067BLB8_SAPPC4.680e-2558.1140S ribosomal protein S21 n=5 Tax=Saprolegniaceae ... [more]
W7TTZ6_9STRA6.830e-2558.4440S ribosomal protein S21 n=2 Tax=Monodopsidaceae ... [more]
F0WM79_9STRA9.980e-2556.9440S ribosomal protein S21 n=1 Tax=Albugo laibachii... [more]
A0A7S3FP24_9CHLO1.060e-2457.50Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68222contigM-pyrifera_M_contig68222:608..1064 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.9
Seed ortholog evalue2.9e-19
Seed eggNOG ortholog65071.PYU1_T008043
Preferred nameRPS21
KEGG rclassRC01978
KEGG koko:K02971,ko:K03093,ko:K03644,ko:K03955,ko:K08854,ko:K10900,ko:K13179,ko:K20168
KEGG TC3.D.1.6
KEGG ReactionR07767,R07768
KEGG Pathwayko00190,ko00785,ko01100,ko03010,ko04137,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,ko05202,map00190,map00785,map01100,map03010,map04137,map04714,map04723,map04932,map05010,map05012,map05016,map05202
KEGG ModuleM00146,M00177
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000447,GO:0000460,GO:0000461,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0000956,GO:0002181,GO:0002182,GO:0002376,GO:0002520,GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006414,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009657,GO:0009658,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0030867,GO:0031090,GO:0031123,GO:0031125,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042127,GO:0042175,GO:0042254,GO:0042274,GO:0042788,GO:0042886,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0047485,GO:0048513,GO:0048519,GO:0048534,GO:0048542,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098827,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.40S ribosomal protein S21
EggNOG OGs1MI2Q@121069,KOG3486@1,KOG3486@2759
EC2.7.11.1,2.8.1.8,3.6.4.12,3.6.4.13
COG Functional cat.J
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01001,ko03009,ko03011,ko03021,ko03032,ko03041,ko03400,ko04131
Exons3
Model size249
Cds size246
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68222.16431.1prot_M-pyrifera_M_contig68222.16431.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68222 608..1061 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816573.2736025-CDS-M-pyrifera_M_contig68222:607..7541622816573.2736025-CDS-M-pyrifera_M_contig68222:607..754Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68222 608..754 -
1692278054.5023935-CDS-M-pyrifera_M_contig68222:607..7541692278054.5023935-CDS-M-pyrifera_M_contig68222:607..754Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68222 608..754 -
1622816573.2857969-CDS-M-pyrifera_M_contig68222:879..9281622816573.2857969-CDS-M-pyrifera_M_contig68222:879..928Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68222 880..928 -
1692278054.5139523-CDS-M-pyrifera_M_contig68222:879..9281692278054.5139523-CDS-M-pyrifera_M_contig68222:879..928Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68222 880..928 -
1622816573.2967951-CDS-M-pyrifera_M_contig68222:1011..10611622816573.2967951-CDS-M-pyrifera_M_contig68222:1011..1061Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68222 1012..1061 -
1692278054.5226254-CDS-M-pyrifera_M_contig68222:1011..10611692278054.5226254-CDS-M-pyrifera_M_contig68222:1011..1061Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68222 1012..1061 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816573.308341-UTR-M-pyrifera_M_contig68222:1061..10641622816573.308341-UTR-M-pyrifera_M_contig68222:1061..1064Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig68222 1062..1064 -
1692278054.5311081-UTR-M-pyrifera_M_contig68222:1061..10641692278054.5311081-UTR-M-pyrifera_M_contig68222:1061..1064Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig68222 1062..1064 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68222.16431.1

>prot_M-pyrifera_M_contig68222.16431.1 ID=prot_M-pyrifera_M_contig68222.16431.1|Name=mRNA_M-pyrifera_M_contig68222.16431.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
MQNASGENVELYIPRKCSWTNRLIAAKDHGAIQLNVGVVDGSGILTDKLL
TYALAGKVRERGESDLALTELVTRDDRAMRE*
back to top

mRNA from alignment at M-pyrifera_M_contig68222:608..1064-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68222.16431.1 ID=mRNA_M-pyrifera_M_contig68222.16431.1|Name=mRNA_M-pyrifera_M_contig68222.16431.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=457bp|location=Sequence derived from alignment at M-pyrifera_M_contig68222:608..1064- (Macrocystis pyrifera P11B4 male)
TCAATGCAGAACGCATCCGGCGAGAACGTGGAGTTGTACATCCCCCGCAA ATGGTGCGTGCATTGGAGGGGAGATTGGGTCGGAAGGACGAGGGGAAAGA GGGTTTTGGAATTTGTATTTTTTTTGTCCATTGCAGCTCTTGGACCAACC GCCTCATTGCGGCCAAGGACCACGGTGCTATTCAGGTAAGTATGGTTGAG GGAGGGGTTTTGTGTTGTTTGAGTGGGTAGTTGGGGTGTAGAGAGTGGTG TGGGGTGAGGAAAACGCTTCGGAAGAGATTCGAATGGTACACTTTTCCAT GTTCCTGCAGCTTAACGTGGGCGTGGTTGACGGCTCCGGTATCCTTACCG ACAAGCTGTTGACGTACGCACTGGCAGGAAAGGTGCGCGAGCGAGGAGAG TCCGATTTGGCCTTGACTGAACTCGTCACCAGAGACGACCGTGCCATGCG CGAATAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig68222:608..1064-

>mRNA_M-pyrifera_M_contig68222.16431.1 ID=mRNA_M-pyrifera_M_contig68222.16431.1|Name=mRNA_M-pyrifera_M_contig68222.16431.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig68222:608..1064- (Macrocystis pyrifera P11B4 male)
ATGCAGAACGCATCCGGCGAGAACGTGGAGTTGTACATCCCCCGCAAATG
ATGCAGAACGCATCCGGCGAGAACGTGGAGTTGTACATCCCCCGCAAATG
CTCTTGGACCAACCGCCTCATTGCGGCCAAGGACCACGGTGCTATTCAGC
TCTTGGACCAACCGCCTCATTGCGGCCAAGGACCACGGTGCTATTCAGCT
TAACGTGGGCGTGGTTGACGGCTCCGGTATCCTTACCGACAAGCTGTTGA
CGTACGCACTGGCAGGAAAGGTGCGCGAGCGAGGAGAGTCCGATTTGGCC
TTGACTGAACTCGTCACCAGAGACGACCGTGCCATGCGCGAATAACTTAA
CGTGGGCGTGGTTGACGGCTCCGGTATCCTTACCGACAAGCTGTTGACGT
ACGCACTGGCAGGAAAGGTGCGCGAGCGAGGAGAGTCCGATTTGGCCTTG
ACTGAACTCGTCACCAGAGACGACCGTGCCATGCGCGAATAA
back to top