mRNA_M-pyrifera_M_contig6822.16427.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6822.16427.1
Unique NamemRNA_M-pyrifera_M_contig6822.16427.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6822.16427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6822contigM-pyrifera_M_contig6822:5845..6255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size411
Cds size312
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816573.0316606-CDS-M-pyrifera_M_contig6822:5844..61561622816573.0316606-CDS-M-pyrifera_M_contig6822:5844..6156Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6822 5845..6156 +
1692278054.3937902-CDS-M-pyrifera_M_contig6822:5844..61561692278054.3937902-CDS-M-pyrifera_M_contig6822:5844..6156Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6822 5845..6156 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816573.0445652-UTR-M-pyrifera_M_contig6822:6156..62551622816573.0445652-UTR-M-pyrifera_M_contig6822:6156..6255Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6822 6157..6255 +
1692278054.4032683-UTR-M-pyrifera_M_contig6822:6156..62551692278054.4032683-UTR-M-pyrifera_M_contig6822:6156..6255Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6822 6157..6255 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6822.16427.1prot_M-pyrifera_M_contig6822.16427.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6822 5845..6156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6822.16427.1

>prot_M-pyrifera_M_contig6822.16427.1 ID=prot_M-pyrifera_M_contig6822.16427.1|Name=mRNA_M-pyrifera_M_contig6822.16427.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
MYVRIISFPGGIIIRLAGNVTPAIQQTRLSCSYHATVTTTCVFPNTTTSL
CATYRPPYIHEAELDGGLSLGSTYSHRQQACPIFVIARRGKDMHNTTTKN
WRR*
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mRNA from alignment at M-pyrifera_M_contig6822:5845..6255+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6822.16427.1 ID=mRNA_M-pyrifera_M_contig6822.16427.1|Name=mRNA_M-pyrifera_M_contig6822.16427.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig6822:5845..6255+ (Macrocystis pyrifera P11B4 male)
ATGTATGTTCGAATTATTTCGTTCCCTGGAGGAATTATCATACGTCTTGC
CGGAAACGTGACGCCCGCTATCCAGCAAACACGCCTATCGTGCTCCTACC
ACGCCACCGTGACAACAACCTGCGTATTTCCCAATACCACCACCAGCCTA
TGTGCCACGTACCGTCCACCGTATATACATGAGGCCGAACTTGACGGCGG
TCTCTCACTTGGCTCTACGTACAGCCACCGACAGCAGGCATGCCCGATTT
TCGTCATAGCACGCCGCGGCAAGGATATGCACAACACGACAACCAAAAAC
TGGCGACGCTAGCTCGTGTCTTGCCCACAGGATCGACAAAACGGCCAAGC
AACTGACACGCGGGTTCATATCTTCCCCACTCCCCGCCTCTCTTGCCGCC
GCACCGATCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6822:5845..6255+

>mRNA_M-pyrifera_M_contig6822.16427.1 ID=mRNA_M-pyrifera_M_contig6822.16427.1|Name=mRNA_M-pyrifera_M_contig6822.16427.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig6822:5845..6255+ (Macrocystis pyrifera P11B4 male)
ATGTATGTTCGAATTATTTCGTTCCCTGGAGGAATTATCATACGTCTTGC
CGGAAACGTGACGCCCGCTATCCAGCAAACACGCCTATCGTGCTCCTACC
ACGCCACCGTGACAACAACCTGCGTATTTCCCAATACCACCACCAGCCTA
TGTGCCACGTACCGTCCACCGTATATACATGAGGCCGAACTTGACGGCGG
TCTCTCACTTGGCTCTACGTACAGCCACCGACAGCAGGCATGCCCGATTT
TCGTCATAGCACGCCGCGGCAAGGATATGCACAACACGACAACCAAAAAC
TGGCGACGCTAGATGTATGTTCGAATTATTTCGTTCCCTGGAGGAATTAT
CATACGTCTTGCCGGAAACGTGACGCCCGCTATCCAGCAAACACGCCTAT
CGTGCTCCTACCACGCCACCGTGACAACAACCTGCGTATTTCCCAATACC
ACCACCAGCCTATGTGCCACGTACCGTCCACCGTATATACATGAGGCCGA
ACTTGACGGCGGTCTCTCACTTGGCTCTACGTACAGCCACCGACAGCAGG
CATGCCCGATTTTCGTCATAGCACGCCGCGGCAAGGATATGCACAACACG
ACAACCAAAAACTGGCGACGCTAG
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