mRNA_M-pyrifera_M_contig68156.16420.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68156.16420.1
Unique NamemRNA_M-pyrifera_M_contig68156.16420.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig68156.16420.1 vs. uniprot
Match: A0A7V3PN22_9BACT (Glyco_hydro_42 domain-containing protein (Fragment) n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7V3PN22_9BACT)

HSP 1 Score: 249 bits (637), Expect = 8.590e-76
Identity = 137/323 (42.41%), Postives = 190/323 (58.82%), Query Frame = 1
Query:    1 FGAGIIYGTWKGYSTESEVDTWDNTSYAAIVGMGGTVTGASINWVAVQPTQGAAYNWTDVDRTVELASENGLSMMAYMGNTPDWALDPANK---GLGYRFPPLPQYADDFSAFFKAATSRYCGKL-HTEFWNEENGCSWENPGCSNGNMAPSYAPWLCRFYEAVKEGCPQMLVSVGGLDANSGVPPSALAQYIEDLYSSNASQCFDRVALHPYGTLSTGQCLHYDAITAIENVLASHNNSDRKLWINEYGWNSPDENAKAACIKESLDYLTKNPN---IEAATYLSLTDLPNVPDGKP-GYGLCSQNSTAETITPRASYTAFQ 945
            +G GII+G W G   + +   +D  S   I   GGT   A+  W+ ++P QG  Y+W  VD  V  A   GL + AY G TPDWAL P      G+GYRFPP P+Y   F+ FF A   RY G++ + EFWNE NGC W N  C+NG+MA +Y PWL  +YEA+K G P+ ++++GGLD ++GV      +Y+ED+Y +     FD VA+HPYG       L+++AI     VL  H ++ +K+W+NEYGWN+ DE AKA  ++  L  L K P    +  A+YL LTDLP+  D     +GLCS++  A  + PR SY  F+
Sbjct:   77 YGCGIIWGKWLGLP-DDQAKAFDRASMDMIKAAGGTNVPANFAWIDIEPRQGE-YHWDYVDHQVREARARGLEIFAYTGLTPDWALPPEAPRVPGIGYRFPPDPKYIPQFTRFFTALARRYRGRVRYYEFWNEPNGCGWINDDCANGHMAHTYVPWLKLWYEAMKAGDPECVLAIGGLDYHTGVEGW---RYLEDIYRAGGGDFFDAVAIHPYG-----DPLNWNAIRDTYAVLVRHGDAHKKIWVNEYGWNTRDEEAKARYLRAVLTELAK-PRWHMVFQASYLCLTDLPDADDAAGHDFGLCSRDRQAVRVVPRPSYEVFR 388          
BLAST of mRNA_M-pyrifera_M_contig68156.16420.1 vs. uniprot
Match: A0A3A8L8P8_9DELT (Uncharacterized protein n=3 Tax=Myxococcaceae TaxID=31 RepID=A0A3A8L8P8_9DELT)

HSP 1 Score: 207 bits (526), Expect = 3.190e-58
Identity = 114/313 (36.42%), Postives = 165/313 (52.72%), Query Frame = 1
Query:   46 ESEVDTWDNTSYAAIVGMGGTVTGASINWVAVQPTQGAAYNWTDVDRTVELASENGLSMMAYMGNTPDWALDPANKGLGYRFPPLPQYADDFSAFFKAATSRYCGKL-HTEFWNEENGCSWENPGCSNGNMAPS--YAPWLCRFYEAVKEGCPQMLVSVGGLDANSGVPPSALAQYIEDLYSSNASQCFDRVALHPYG----TLSTGQCLHYDAITAIENVLASHNNSDRKLWINEYGWNSPDENAKAACIKESLDYLTKNPN--IEAATYLSLTDLPNVPDGKPGYGLCSQNSTAE--TITPRASYTAFQTY 951
            ++++  WD  S   +   G   T    +W  +Q T+   ++WT  +   E A E GL   A+ G TP WAL PA     +R PP PQY  DF  FF+  ++R+C ++ + EFWNE NGCSW NP CSNG  A +  YA WL  +Y A+KEGCP +++S GGLD   G   +  +QYIE +Y+      FD VA+HPYG    T      L+   I  +  V+   N   +K+W +E+G+N+ DE  K   +  +L +     +  I  A YL++ D    P     YGLC  N+T     +T R SY  ++T+
Sbjct:  144 QTKITAWDRESMKKVAEAGAVGTHIGFSWADIQATRTGPFDWTGAEAQYEAARERGLLPFAFSGTTPLWAL-PAGFTESHRSPPDPQYTADFQYFFRELSARFCNRVRYYEFWNEPNGCSWVNPNCSNGQQAQAELYADWLKLWYVAMKEGCPDVVLSTGGLDCYPGTGATGCSQYIEWIYNRIGGDYFDAVAIHPYGVKEPTSDNDAYLNIAGIEDVRRVMVERNQPWKKIWADEWGYNTRDEALKGRMVDRALSWFEDPAHDYIFQARYLTVQDTGETPVDH-NYGLCDINATVSPPAVTARPSYQTYRTH 454          
BLAST of mRNA_M-pyrifera_M_contig68156.16420.1 vs. uniprot
Match: A0A4Q6A504_9DELT (Uncharacterized protein n=1 Tax=Myxococcaceae bacterium TaxID=2484252 RepID=A0A4Q6A504_9DELT)

HSP 1 Score: 195 bits (495), Expect = 1.240e-53
Identity = 108/315 (34.29%), Postives = 167/315 (53.02%), Query Frame = 1
Query:   46 ESEVDTWDNTSYAAIVGMGGTVTGASINWVAVQP-TQGAAYNWTDVDRTVELASENGLSMMAYMGNTPDWALDPANKGLGYRFPPLPQYADDFSAFFKAATSRYCGKL-HTEFWNEENGCSWENPGCSNGNMAPS--YAPWLCRFYEAVKEGCPQMLVSVGGLDANS-GVPPSALAQYIEDLYSSNASQCFDRVALHPYGTLS----TGQCLHYDAITAIENVLASHNNSDRKLWINEYGWNSPDENAKAACIKESLDYLTKNPN--IEAATYLSLTDLPNVPDGKPGYGLCSQNSTAE--TITPRASYTAFQTY 951
            ++++D WD  S   +   G   T    +W  +QP ++   Y+WT  +     A E GL    + GNTP WAL PA     +R PP  QYA DF  FF+  ++R+C ++ + EFWNE NGCSW N  CSNG  A +  YA WL R+Y A+KEGCP +++S GGLD N      +  +QYI+ +Y+    + FD +++HPYG           L+   I  +  V+   N   +K+W +E+G+N+ DE  K+  +  +LD+     +  +  A YL++ D    P     +GL   ++T     +T R SY  ++T+
Sbjct:  159 QAQIDAWDRESLKKVAEAGAVATHLGFSWEDIQPNSRTQPYDWTGAEAQYAAALERGLLPFVFTGNTPHWAL-PAGSTFPHRSPPDEQYAADFEYFFRELSARFCNRVRYYEFWNEPNGCSWVNDHCSNGQQAQAERYADWLKRWYVAMKEGCPDVVLSTGGLDCNGPSTGATGCSQYIDWIYNRIGGEYFDAISIHPYGPKEPQSGNDPYLNIPGIENVRQVMVERNQGWKKIWADEWGYNTRDETLKSLMVGRALDWFEDPAHDYVFQARYLTVQDTGETPVDH-NFGLMDIDATVSPPVLTARTSYPTYRTH 471          
BLAST of mRNA_M-pyrifera_M_contig68156.16420.1 vs. uniprot
Match: A0A7X7J117_9BACT (PKD domain-containing protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7X7J117_9BACT)

HSP 1 Score: 170 bits (430), Expect = 2.230e-45
Identity = 109/327 (33.33%), Postives = 162/327 (49.54%), Query Frame = 1
Query:    1 FGAGIIYGTWKGYSTESEVDTWDNTSYAAIVGMGGTVTGASINWVAVQPTQGAAYNWTDVDRT---VELASENGLSMMAYMGNTPDWA-LDPANKGLGYRFPPLPQYADDFSAFFKAATSRYCGKL-HTEFWNEENGCSWENPGCSNGNMAPSYAPWLCRFYEAVKEGCPQMLVSVGGLDANSGVPPSALAQYIEDLYSSNASQCFDRVALHPYGTLSTGQCLHYDAITAIENVLASHNNSDRKLWINEYGWNSPDENAKAACIKESLDYLTKNPN---IEAATYLSLTDLPNVPDGKPGYGLCSQNSTAETITPRASYTAFQTYPK 957
            FG G     W G     +   WD+     +V +G T++G  + W   +P +G  YNW+ +D     V+     G+    ++G TP WA L P  +   +R PP       F  F +   +RY G++ +  FWNE NGCSW N GCSN +  P Y  WL R  +A+K+  P   +    +D +SGV      QYI+ +Y+  A   FD +++HPY    T   +H+ A+T   NV+ ++ ++D+ +WI+EYGWNS D    A  + + L  L K P    +E A YL L D      G   YGL + N     + PR  Y AF+ + K
Sbjct:   29 FGMGRYTAAWAGKPLSYDQAIWDH-----MVTIGATISGTGLAWCDGEPVEGE-YNWSAIDYADFCVDEMLARGIEPTFFVGLTPQWAKLHPELEP--HRTPPREDCVTQFMDFHRFVANRYAGRVKYYCFWNEPNGCSWINDGCSNSDSYPLYTQWLIRCSQAIKDEDPNAKIVAANIDYHSGVAHGY--QYIQGMYTQGAGPYFDIISIHPYDWSGT---IHWQAVTDTRNVMVANGDADKPIWISEYGWNSTDYQLTADKMVQVLTEL-KKPEWSFVEQANYLVLND----GSGVENYGLMNAN-----LIPRVGYYAFRDFDK 332          
BLAST of mRNA_M-pyrifera_M_contig68156.16420.1 vs. uniprot
Match: A0A7V4W8R9_9BACT (Uncharacterized protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7V4W8R9_9BACT)

HSP 1 Score: 147 bits (372), Expect = 5.720e-37
Identity = 102/279 (36.56%), Postives = 142/279 (50.90%), Query Frame = 1
Query:  130 WVAVQPTQGAAYNWTDVDRTVELASENGLSMMAYMGNTPDWALDPANKGLGYRFPPLPQYADDFSAFFKAATSRYCGKL-HTEFWNEENGCSWENPGCSNGNMAPSYAPWLCRFYEAVKEGCPQMLVSVGGLDANSGVPPSALAQYIEDLYSSNASQCFDRVALHPYGTLSTGQCLHYDAITAIENVLASHNNSDRKLWINEYGWNSP--DENAKAACIKESLDYLTKNPNIEAATYLSLTDLPNVPDGKPGYGLCSQNSTAETITPRASYTAFQTYPK 957
            W  V+   G  Y+++D DR V    + G      +  TP + L P  +   + +P LP+Y    + F++   +RY GK+ + EFWNEENG SW        N    YAP L   Y+A+KEG P  +V++GGLD   G        Y+E LY     + FD VA+HPY   + G    Y  +  I  VL  H + DRK+WI EYGW+     EN KA  +KESLD LT +P ++     S+  L +  D +  YGLC +N     + PR  Y  F+ YPK
Sbjct:   56 WDLVEKEPGI-YDFSDPDRDVAQCIKYGFEPFFLVVATPKFYLKPEMRDKPWGWPALPEYYPQAAKFYRTLAARYKGKVRYFEFWNEENGYSWHAI-----NKPEEYAPILKVAYKALKEGNPDCVVAIGGLD---GAGWKGYYHYLERLYELGCGEYFDAVAVHPYR--ADGPIDVY-GLKKIHQVLVDHGHGDRKIWITEYGWSKEYGHEN-KAKWLKESLDLLT-SPELDFVFQASVHTLCDFDDAE--YGLCDRN-----LNPRPGYYVFKNYPK 313          
BLAST of mRNA_M-pyrifera_M_contig68156.16420.1 vs. uniprot
Match: A0A7C5FVJ1_9BACT (Uncharacterized protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7C5FVJ1_9BACT)

HSP 1 Score: 112 bits (281), Expect = 4.630e-24
Identity = 86/306 (28.10%), Postives = 141/306 (46.08%), Query Frame = 1
Query:   64 WDNTSYAAIVGMGGTVTGASINWVAVQPTQGAAYNWTDVDRTVELASENG-LSMMAYMGNTPDWALDPANKGLGYRFPPLPQYADDFSAFFKAATSRYCGKL-HTEFWNEENGCSWENPGCSNGNMAPSYAPWLCRFYEAVKEGCPQMLVSVGGLDANSGVPPSALAQYIEDL----YSSNASQCFDRVALHPYGTLSTGQCLHYDAITAIENVLASHNNSDRKLWINEYGWNSPD--ENAKAACIKESLDYLTKNPNIEAATYLSLTDLPNVPDGKPGYGLCSQNSTAETITPRASYTAFQTYPK 957
            +D+  +  I   G T    + +W  ++  +G  Y+WT ++ T++   +   +     + NTP WA      G     PP+P    DF  F +A   RY G   H E WNE+NG  WE P     N    Y P L   YE +KEG P+ +VS+GGLD   G  P   A+   DL    Y S A   +D    HPY    +        + AI+ + A++ + + ++W+ EYG+++ +  E  +A  + + +  L  +P     T  +   + +  +   G+GLC  N     + PR ++ A+Q  P+
Sbjct:   47 YDDMVWRRIAEAGATSVRQAASWREIEAVKGT-YDWTQIEDTLKYCRKYPQIRPYLLIVNTPGWA---RADGQPSHLPPMPSAIPDFRKFCRALAQRYKGYADHFEVWNEQNGFGWEVPPY---NQFDKYLPLLEAAYEGLKEGNPECVVSLGGLDDADGHSP-IFAKGCYDLRAKDYGSRAM--WDAFGDHPYRETESMMA----KLRAIKGIAAAYGDCNLEMWLTEYGFHTGEMSEEEQAKRLTDYMTTLITDPEFRYVTETNYLCVADFEETTHGFGLCDAN-----LRPRPAFWAYQRLPR 333          
BLAST of mRNA_M-pyrifera_M_contig68156.16420.1 vs. uniprot
Match: A0A1G4WZK4_9MYCO (VCBS repeat-containing protein/40-residue YVTN family beta-propeller repeat-containing protein n=3 Tax=Mycolicibacterium fluoranthenivorans TaxID=258505 RepID=A0A1G4WZK4_9MYCO)

HSP 1 Score: 93.6 bits (231), Expect = 2.420e-17
Identity = 80/273 (29.30%), Postives = 120/273 (43.96%), Query Frame = 1
Query:  130 WVAVQPTQGAAYNWTDVDRTVELASENGLSMMAYMGNTPDWALDPANKGLGYRFPPLPQYADDFSAFFKAATSRYCGKLHT-EFWNEEN-GCSWENPGCSNGNMAPSYAPWLCRFYEAVKEGCPQMLVSVGGLDANSGVPPSAL--AQYIEDLYSSNASQCFDRVALHPYG---TLSTGQCLHYDAITAIEN---VLASHNNSDRKLWINEYGWNSPD--ENAKAACIKESLDYLTKNPNIEAATYLSLTDLPNVPDGKP---GYGLCSQNST 903
            W  ++P  G  Y+W  VDR V+ A  NG++++  +G TPDWA  P       R    P   D F+ F     + + G++   E WNE N G  W     +    A  Y   L   Y A+K   P  +V    + A    P  A+    ++  +Y++ A   FD V+ HPY      S G+      IT  E    V+ ++ + ++K+W  EYG  + D  E A+AA I    D+L     +E A    L    + PD  P    +GL  Q+ T
Sbjct: 1123 WAGIEPADGT-YDWAAVDRVVDSAQSNGITVLGVLGTTPDWAAVPGQAQYQGR----PADLDAFAEFVTEVATHFQGRVSDYEVWNEPNAGIFW-----APAPDAAQYTALLKVAYTAIKGADPDAVVIAASVGAGPEDPGVAINPVTFLAQMYAAGAGGYFDAVSFHPYQYALLFSVGEGHAGTPITQAEQMYAVMVANGDGNKKIWATEYGEPTSDVSETAQAAYIG---DFLRTWRTLEFAGPAFLHTFADYPDPDPTQASFGLFRQDWT 1382          
BLAST of mRNA_M-pyrifera_M_contig68156.16420.1 vs. uniprot
Match: L0L2U2_METHD (Beta-1,4-xylanase n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) TaxID=867904 RepID=L0L2U2_METHD)

HSP 1 Score: 90.9 bits (224), Expect = 1.700e-16
Identity = 70/245 (28.57%), Postives = 110/245 (44.90%), Query Frame = 1
Query:  124 INWVAVQPTQGAAYNWTDVDRTVELASENGLSMMAYMGNTPDWALDPANKGLGYRFPPLPQYADDFSAFFKAATSRYCGKLHT-----EFWNEENGCSWENPGCSNGNMAPSYAPWLCRFYEAVKEGCPQMLVSVGGL----DANSGVPPSALAQYIEDLYSSNASQCFDRVALHPY----GTLSTGQCLHYDAITAIENVLASHNNSDRKLWINEYGWNSPDENAKAACIKESL-----DYLTK 804
            I W AV+  +G  YNW   D+  + A + G+  +  +   P+WA+         + PP  +  +DF+ F K    RY    +      E WNE N       G    + A SYA  L   Y A+KEG P   V  GGL      ++ + P     +I  LY + A   FD +ALHPY       S  +   + +I ++  ++  + +SD+K+WI EYG  +    +K   I E +     DY+++
Sbjct:   67 IEWRAVEKERGI-YNWETSDKVAKTAQKYGIKSLIIIHLPPEWAIQEGLYNENRQSPP--KEFEDFAYFAKQVAIRYKESAYGPIEYFEIWNEPN----LEGGWYPASNAESYAELLKLSYTAIKEGNPNARVISGGLAMAVTKDNNISP---VDFINSLYEAGAKGYFDAIALHPYTYPAAPNSEVEWNGWKSIDSVREIMVKNGDSDKKIWITEYGAPTYGPGSKFEIITEGVFNYGSDYMSE 301          
BLAST of mRNA_M-pyrifera_M_contig68156.16420.1 vs. uniprot
Match: UPI000DDBEA69 (cellulase family glycosylhydrolase n=1 Tax=Paracoccus endophyticus TaxID=2233774 RepID=UPI000DDBEA69)

HSP 1 Score: 86.3 bits (212), Expect = 2.540e-15
Identity = 64/221 (28.96%), Postives = 104/221 (47.06%), Query Frame = 1
Query:  124 INWVAVQPTQGAAYNWTDVDRTVELASENGLSMMAYMGNTPDWAL-DPANKGLGYRFPPLPQYADDFSAFFKAATSRYC--GKLHTEFWNEENGCSWENPGCSNGNMAPSYAPWLCRFYEAVKEGCPQMLVSVGGL----DANSGVPPSALAQYIEDLYSSNASQCFDRVALHPYGTLSTGQCLHYDAITA---------IENVLASHNNSDRKLWINEYG 738
            +NW +VQ     +++WT++DR V+LA+  G+ ++  +G+ P+WA  DP         P  P+   +F+ F  AA  RY   G    E WNE N    + P     + A +YA  L     A++   P   + +GGL    D +S     A  +++E +Y+  A   FD V  HPY    TG+ L   A            I +++ +  ++ + +WI EYG
Sbjct:   94 LNWGSVQKDGPDSFDWTEMDRIVDLAAAVGIGLLPVVGSAPEWAWSDPEG-------PSPPRDPAEFARFVAAAVDRYAPRGISTWEIWNEPN---LDGPFPPRPDAA-AYAALLKAAAPAIRAADPDATIILGGLAAVTDTDSAGEAIAAVEFLEAVYAQGAGGSFDAVGFHPY----TGEDLPDLAARGNSWRLMAGPIRDIMVAQGDAAKPIWITEYG 299          
BLAST of mRNA_M-pyrifera_M_contig68156.16420.1 vs. uniprot
Match: UPI00190D3E49 (cellulase family glycosylhydrolase n=2 Tax=unclassified Paracoccus (in: Bacteria) TaxID=2688777 RepID=UPI00190D3E49)

HSP 1 Score: 85.1 bits (209), Expect = 4.770e-15
Identity = 75/278 (26.98%), Postives = 129/278 (46.40%), Query Frame = 1
Query:  124 INWVAVQPTQGAAYNWTDVDRTVELASENGLSMMAYMGNTPDWA-LDPANKGLGYRFPPLPQYADDFSAFFKAATSRY--CGKLHTEFWNEENGCSWENPGCSNGNMAP-----SYAPWLCRFYEAVKEGCPQMLVSVGGLDANSGVPPS----ALAQYIEDLYSSNASQCFDRVALHPYGTLSTGQCLHYD---AITA--IENVLASHNNSDRKLWINEYGWNSPD------ENAKAACIKESLDYLTKNPNIEAATYLSLTDLPNVP-DGKPGYGL 885
            +NW ++Q     +++W+++DR V+LA+  G+ ++   G+TP+WA  +P +       PP    A  F  F +AA  RY   G    E WNE N          +G   P     ++A  L   + A++   P   V +GGL A +    S    A  ++++ +Y   A   FD +  HPY   S      +    A+ A  I +++A+H ++++K+WI EYG  + +      E+ +A  +  S+D     P +    + S  DL   P D +  +GL
Sbjct:   66 LNWASIQRDGPDSFDWSEMDRIVDLAASFGIGVLPVAGSTPEWAWANPEDHS-----PPGDPQA--FGRFLEAAVRRYEPRGIDTWEIWNEPN---------LDGPFPPRPDPVAFAAILKAAHAAIRAADPDATVILGGLAAATSTDRSGRAIAAVEFLQRVYDEGAGGSFDALGFHPYTGASLPDLRGWRNSWALMAGPIRDLMAAHGDAEKKIWITEYGAPTNEAEGGAPESRQAEQLAASVDLARVTPWLGPVFWYSYRDLGTDPKDREDWFGL 327          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68156.16420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A7V3PN22_9BACT8.590e-7642.41Glyco_hydro_42 domain-containing protein (Fragment... [more]
A0A3A8L8P8_9DELT3.190e-5836.42Uncharacterized protein n=3 Tax=Myxococcaceae TaxI... [more]
A0A4Q6A504_9DELT1.240e-5334.29Uncharacterized protein n=1 Tax=Myxococcaceae bact... [more]
A0A7X7J117_9BACT2.230e-4533.33PKD domain-containing protein (Fragment) n=1 Tax=P... [more]
A0A7V4W8R9_9BACT5.720e-3736.56Uncharacterized protein n=1 Tax=Armatimonadetes ba... [more]
A0A7C5FVJ1_9BACT4.630e-2428.10Uncharacterized protein n=1 Tax=Armatimonadetes ba... [more]
A0A1G4WZK4_9MYCO2.420e-1729.30VCBS repeat-containing protein/40-residue YVTN fam... [more]
L0L2U2_METHD1.700e-1628.57Beta-1,4-xylanase n=1 Tax=Methanomethylovorans hol... [more]
UPI000DDBEA692.540e-1528.96cellulase family glycosylhydrolase n=1 Tax=Paracoc... [more]
UPI00190D3E494.770e-1526.98cellulase family glycosylhydrolase n=2 Tax=unclass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68156contigM-pyrifera_M_contig68156:174..1136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score94.4
Seed ortholog evalue1.1e-16
Seed eggNOG ortholog888055.HMPREF9015_01554
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM glycoside hydrolase family 39
EggNOG OGsCOG3664@1,COG3664@2
COG Functional cat.G
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size963
Cds size963
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816572.4590003-CDS-M-pyrifera_M_contig68156:173..11361622816572.4590003-CDS-M-pyrifera_M_contig68156:173..1136Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68156 174..1136 +
1692278054.0487158-CDS-M-pyrifera_M_contig68156:173..11361692278054.0487158-CDS-M-pyrifera_M_contig68156:173..1136Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68156 174..1136 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68156.16420.1prot_M-pyrifera_M_contig68156.16420.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68156 174..1136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68156.16420.1

>prot_M-pyrifera_M_contig68156.16420.1 ID=prot_M-pyrifera_M_contig68156.16420.1|Name=mRNA_M-pyrifera_M_contig68156.16420.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=321bp
FGAGIIYGTWKGYSTESEVDTWDNTSYAAIVGMGGTVTGASINWVAVQPT
QGAAYNWTDVDRTVELASENGLSMMAYMGNTPDWALDPANKGLGYRFPPL
PQYADDFSAFFKAATSRYCGKLHTEFWNEENGCSWENPGCSNGNMAPSYA
PWLCRFYEAVKEGCPQMLVSVGGLDANSGVPPSALAQYIEDLYSSNASQC
FDRVALHPYGTLSTGQCLHYDAITAIENVLASHNNSDRKLWINEYGWNSP
DENAKAACIKESLDYLTKNPNIEAATYLSLTDLPNVPDGKPGYGLCSQNS
TAETITPRASYTAFQTYPKQ*
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mRNA from alignment at M-pyrifera_M_contig68156:174..1136+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68156.16420.1 ID=mRNA_M-pyrifera_M_contig68156.16420.1|Name=mRNA_M-pyrifera_M_contig68156.16420.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=963bp|location=Sequence derived from alignment at M-pyrifera_M_contig68156:174..1136+ (Macrocystis pyrifera P11B4 male)
TTTGGGGCAGGGATTATTTACGGCACTTGGAAAGGGTATTCAACAGAATC AGAGGTGGATACATGGGACAACACCTCTTATGCGGCTATTGTGGGGATGG GAGGGACAGTTACAGGTGCGTCGATTAATTGGGTAGCTGTTCAACCTACA CAAGGGGCTGCATACAATTGGACGGACGTGGATCGGACAGTAGAGCTTGC AAGCGAAAATGGCTTGTCCATGATGGCCTACATGGGAAATACGCCTGATT GGGCATTGGATCCTGCAAACAAGGGGTTGGGGTATCGGTTCCCTCCACTC CCACAATATGCAGATGACTTTTCAGCGTTTTTCAAGGCAGCTACATCTCG GTATTGTGGCAAGCTCCATACAGAGTTTTGGAACGAAGAAAATGGGTGTA GTTGGGAAAACCCTGGGTGCTCCAATGGAAACATGGCTCCTTCATACGCT CCATGGCTGTGTCGATTCTATGAAGCTGTGAAAGAAGGCTGCCCACAAAT GCTTGTGTCTGTTGGTGGGTTGGATGCGAATTCTGGAGTTCCACCATCAG CTCTTGCCCAATACATTGAAGATTTATATTCCAGCAACGCTTCACAATGC TTTGATCGTGTTGCTCTTCACCCATATGGCACACTTTCCACTGGACAATG TCTCCATTACGACGCAATCACGGCGATCGAAAATGTCCTTGCAAGCCACA ATAACTCGGATCGAAAGCTCTGGATCAATGAGTATGGGTGGAATTCTCCT GACGAAAATGCCAAGGCAGCTTGCATCAAGGAATCGTTGGACTATCTCAC CAAGAACCCCAACATTGAAGCTGCAACCTACCTTTCCCTTACAGACCTTC CAAATGTCCCTGATGGAAAACCTGGATATGGATTATGTTCACAAAACTCT ACAGCAGAAACGATTACACCTCGTGCTTCCTATACAGCATTCCAAACGTA CCCCAAACAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68156:174..1136+

>mRNA_M-pyrifera_M_contig68156.16420.1 ID=mRNA_M-pyrifera_M_contig68156.16420.1|Name=mRNA_M-pyrifera_M_contig68156.16420.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1926bp|location=Sequence derived from alignment at M-pyrifera_M_contig68156:174..1136+ (Macrocystis pyrifera P11B4 male)
TTTGGGGCAGGGATTATTTACGGCACTTGGAAAGGGTATTCAACAGAATC
AGAGGTGGATACATGGGACAACACCTCTTATGCGGCTATTGTGGGGATGG
GAGGGACAGTTACAGGTGCGTCGATTAATTGGGTAGCTGTTCAACCTACA
CAAGGGGCTGCATACAATTGGACGGACGTGGATCGGACAGTAGAGCTTGC
AAGCGAAAATGGCTTGTCCATGATGGCCTACATGGGAAATACGCCTGATT
GGGCATTGGATCCTGCAAACAAGGGGTTGGGGTATCGGTTCCCTCCACTC
CCACAATATGCAGATGACTTTTCAGCGTTTTTCAAGGCAGCTACATCTCG
GTATTGTGGCAAGCTCCATACAGAGTTTTGGAACGAAGAAAATGGGTGTA
GTTGGGAAAACCCTGGGTGCTCCAATGGAAACATGGCTCCTTCATACGCT
CCATGGCTGTGTCGATTCTATGAAGCTGTGAAAGAAGGCTGCCCACAAAT
GCTTGTGTCTGTTGGTGGGTTGGATGCGAATTCTGGAGTTCCACCATCAG
CTCTTGCCCAATACATTGAAGATTTATATTCCAGCAACGCTTCACAATGC
TTTGATCGTGTTGCTCTTCACCCATATGGCACACTTTCCACTGGACAATG
TCTCCATTACGACGCAATCACGGCGATCGAAAATGTCCTTGCAAGCCACA
ATAACTCGGATCGAAAGCTCTGGATCAATGAGTATGGGTGGAATTCTCCT
GACGAAAATGCCAAGGCAGCTTGCATCAAGGAATCGTTGGACTATCTCAC
CAAGAACCCCAACATTGAAGCTGCAACCTACCTTTCCCTTACAGACCTTC
CAAATGTCCCTGATGGAAAACCTGGATATGGATTATGTTCACAAAACTCT
ACAGCAGAAACGATTACACCTCGTGCTTCCTATACAGCATTCCAAACGTA
CCCCAAACAATGATTTGGGGCAGGGATTATTTACGGCACTTGGAAAGGGT
ATTCAACAGAATCAGAGGTGGATACATGGGACAACACCTCTTATGCGGCT
ATTGTGGGGATGGGAGGGACAGTTACAGGTGCGTCGATTAATTGGGTAGC
TGTTCAACCTACACAAGGGGCTGCATACAATTGGACGGACGTGGATCGGA
CAGTAGAGCTTGCAAGCGAAAATGGCTTGTCCATGATGGCCTACATGGGA
AATACGCCTGATTGGGCATTGGATCCTGCAAACAAGGGGTTGGGGTATCG
GTTCCCTCCACTCCCACAATATGCAGATGACTTTTCAGCGTTTTTCAAGG
CAGCTACATCTCGGTATTGTGGCAAGCTCCATACAGAGTTTTGGAACGAA
GAAAATGGGTGTAGTTGGGAAAACCCTGGGTGCTCCAATGGAAACATGGC
TCCTTCATACGCTCCATGGCTGTGTCGATTCTATGAAGCTGTGAAAGAAG
GCTGCCCACAAATGCTTGTGTCTGTTGGTGGGTTGGATGCGAATTCTGGA
GTTCCACCATCAGCTCTTGCCCAATACATTGAAGATTTATATTCCAGCAA
CGCTTCACAATGCTTTGATCGTGTTGCTCTTCACCCATATGGCACACTTT
CCACTGGACAATGTCTCCATTACGACGCAATCACGGCGATCGAAAATGTC
CTTGCAAGCCACAATAACTCGGATCGAAAGCTCTGGATCAATGAGTATGG
GTGGAATTCTCCTGACGAAAATGCCAAGGCAGCTTGCATCAAGGAATCGT
TGGACTATCTCACCAAGAACCCCAACATTGAAGCTGCAACCTACCTTTCC
CTTACAGACCTTCCAAATGTCCCTGATGGAAAACCTGGATATGGATTATG
TTCACAAAACTCTACAGCAGAAACGATTACACCTCGTGCTTCCTATACAG
CATTCCAAACGTACCCCAAACAATGA
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