mRNA_M-pyrifera_M_contig6798.16396.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6798.16396.1
Unique NamemRNA_M-pyrifera_M_contig6798.16396.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig6798.16396.1 vs. uniprot
Match: D8LMY3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMY3_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 2.480e-31
Identity = 67/98 (68.37%), Postives = 87/98 (88.78%), Query Frame = 3 
Query:   90 MDSKIKDITEKLSRLEGLAAGGNDQAAVLQQHQREMLDRLREIRTALATESGDLESVKAANSEVAKLREVIKRKDYRILHLTRALDSAAPATVEPPSA 383
            M+SKIK++TE+LS+LEGLA GGND   +LQQHQ+EML +LREIR A+ATE+G+L+SVK AN+EVAKLREVIKR+DYRILHL+RAL++ A ++ +P SA
Sbjct:    1 MESKIKEMTEQLSKLEGLA-GGNDGHTLLQQHQKEMLAKLREIRAAMATETGELDSVKEANAEVAKLREVIKRRDYRILHLSRALEAGASSSADPTSA 97
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6798.16396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMY3_ECTSI2.480e-3168.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6798contigM-pyrifera_M_contig6798:7024..10828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_004110.1
Exons4
Model size1406
Cds size297
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6798.16396.1prot_M-pyrifera_M_contig6798.16396.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6798 7404..9808 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816571.0553963-UTR-M-pyrifera_M_contig6798:7023..70781622816571.0553963-UTR-M-pyrifera_M_contig6798:7023..7078Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6798 7024..7078 +
1692278053.2714045-UTR-M-pyrifera_M_contig6798:7023..70781692278053.2714045-UTR-M-pyrifera_M_contig6798:7023..7078Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6798 7024..7078 +
1622816571.067833-UTR-M-pyrifera_M_contig6798:7369..74031622816571.067833-UTR-M-pyrifera_M_contig6798:7369..7403Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6798 7370..7403 +
1692278053.281092-UTR-M-pyrifera_M_contig6798:7369..74031692278053.281092-UTR-M-pyrifera_M_contig6798:7369..7403Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6798 7370..7403 +
1622816571.1162353-UTR-M-pyrifera_M_contig6798:9808..108281622816571.1162353-UTR-M-pyrifera_M_contig6798:9808..10828Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6798 9809..10828 +
1692278053.3141248-UTR-M-pyrifera_M_contig6798:9808..108281692278053.3141248-UTR-M-pyrifera_M_contig6798:9808..10828Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6798 9809..10828 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816571.0812495-CDS-M-pyrifera_M_contig6798:7403..74211622816571.0812495-CDS-M-pyrifera_M_contig6798:7403..7421Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6798 7404..7421 +
1692278053.2893388-CDS-M-pyrifera_M_contig6798:7403..74211692278053.2893388-CDS-M-pyrifera_M_contig6798:7403..7421Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6798 7404..7421 +
1622816571.091988-CDS-M-pyrifera_M_contig6798:8643..86831622816571.091988-CDS-M-pyrifera_M_contig6798:8643..8683Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6798 8644..8683 +
1692278053.2976422-CDS-M-pyrifera_M_contig6798:8643..86831692278053.2976422-CDS-M-pyrifera_M_contig6798:8643..8683Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6798 8644..8683 +
1622816571.103108-CDS-M-pyrifera_M_contig6798:9569..98081622816571.103108-CDS-M-pyrifera_M_contig6798:9569..9808Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6798 9570..9808 +
1692278053.3058887-CDS-M-pyrifera_M_contig6798:9569..98081692278053.3058887-CDS-M-pyrifera_M_contig6798:9569..9808Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6798 9570..9808 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6798.16396.1

>prot_M-pyrifera_M_contig6798.16396.1 ID=prot_M-pyrifera_M_contig6798.16396.1|Name=mRNA_M-pyrifera_M_contig6798.16396.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
MDSKIKDITEKLSRLEGLAAGGNDQAAVLQQHQREMLDRLREIRTALATE
SGDLESVKAANSEVAKLREVIKRKDYRILHLTRALDSAAPATVEPPSA*
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mRNA from alignment at M-pyrifera_M_contig6798:7024..10828+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6798.16396.1 ID=mRNA_M-pyrifera_M_contig6798.16396.1|Name=mRNA_M-pyrifera_M_contig6798.16396.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3805bp|location=Sequence derived from alignment at M-pyrifera_M_contig6798:7024..10828+ (Macrocystis pyrifera P11B4 male)
AAGGCCGCACGCTGCACGCGCACTGACGAGCTGCTCGGAGCCTGGAAAAG
TAAGGGTGAGGAAAATGTTGAGAGCTATGTCCTTCTTCAGATCGATTTAA
TAATTATTATTCGTGGGAAGAAAGCGTATCGCAGCGTTTTCCCCAGAGCA
TGCCCCACACGAGACTGTCGATTTCACCCCCTATTTTCCCCGTTTTCCAC
TTTCCAGGAGTAGGCACCAAACGGTACGTAGCTCTGCCGCACATCCCATA
TTGTGGATGCTTTTGCTCTCGCCCATCGTATCTACTTTCCACTCGAATCC
TACCACACCTATCTCTTGCTTGCTCGCTTTCTCGTTTACGCGGTAGGTTG
TCGACTCGCGTCCGTGGAGTGCAAAGTGCAATGGACTCCAAGATCAAGGT
AGGCGCTTGCATCGTCTCGTTGTTGAGTCGCATTCTGGTGCCGCAAGTAT
CTCACACCAAGTCCAAGTAGTTTGCCCTAAAATCGTTGAGTGAGTGGTGA
GTGAATGGTTACATAACGGAGTCTTCCTTCGCACGAGTACGCACTGCTCT
CTTGTGCTGCTGCTGCTGCTGCTGCTGCTGTCTGCCGCACTGCCGACAGC
TATATACGGTATGTATGTACAGCACCCCGCCTCTTGTATGTTTAGTGTGT
GCAGTTCCGTCCCGGAGAAGACTTGTGGTGCGCGGCTGAAATGAGCGTGT
CGTTCCTCAACCTGTGTATTTTACGCCCGTTGAGTTACCCAAAGGTACCC
TGGTATCTGGTATCTGTGCGCATGCATGACAACGGCGGTGCCTATGCTAC
CTACGAACCTACCCTCTGGCAGAGCTAATAGCTCTCCTTACGCATACCGC
ATGACAACGACAGCCGGTGCCTACGATCCTAGAGTTGACGCTCTGTATAT
ATAGCTCTCCCTGCTCATTCACATCGACGTGGTGCGGGACTGCTTTCAAC
AGGCTCACCGCGTACATGCCCAATGAGCTACATGTCAGCCGCGATAACCG
CGTGCTTCTCGGCTACTGCTCTGGGGTCACATATAAACAACGCAGAATAA
TATTAATACGCGGTGGGTTCGTGCAAAAGAAAAAGACACTATTTCCGGTG
TGGTGTGATCTATCGCTTGGTAAAAGCTTACAAGGTAAAGCTATATTTTG
ATCAAATCCGCCAGAGGAACAAGGTTTCCATGCGTAATGCACGCACGTGA
ACACGACGGCCTTATGCGAGGGCTCGACCCTTGAGTTGTCCGAAGTATCT
CCTGGCTTTGCTACTGCAGACAATGCCGCGGTGAGCAGAGTAGAGGTATG
AATAACACCCACCCACTGCGTCAATCCCGACACCTCAAGAAAAGGCAGAC
CGCAGATTGCCGATTGAAACGTTCTGCTTGTTCTGTGTGTCGTGCACCTG
GTTCTAAATATGTTGTACGTACCTGGTATCGTCGATGGATCCCGTTCATC
GTTCCGTCCTTTATCGTGAACAAAGCGTTTCATCCCTCGGCCATCGTGTA
TCGTGTATTGTTCATCATGATGCATCGTTTTGTCATGTGTCTTGTGCCCC
TGTGTCGTGTATCGTGTGCGTACATGTACGTCTCGGTGCGTGTGCTCGCG
GGGATGTTGGTCGCGCGCAGGACATCACGGAGAAGCTGTCGCGGCTGGAA
GGGTTAGCAGGCAAGAATTTCGCACGGAATGTGGTTGACGCGCGCGCACG
CGCGACGGGGGCACACGCAGAAGCAACTACGAAGTCGGCACCAGACCTCC
GAGGAGTCGCGGGGGCGACGGCACCACGACCACCCTCAAAATTGTTTCAA
GATCCCCTCCTTGATCCGTTTGCCGTTGCTCTTTGGTCACCCCCGGCCTT
GAACTCATGACCCTAAAGCATCATTACGTAGCGCCGGCAGCGTGCCGTAG
AGTGACAAAGTGTTCGTTACGTCTCTTTTACTGCTCTAGACTGCAGTAAA
TGCCCACCTCATTTATGTGTACGAGTGTGAATATTTGGCCTGTAACCATG
TAGCCGTGACTGTAGATGTGCTGTTGTATTTCGTTTTCGGTACGTCGTCC
AGCATGTACCAATGTTGGGGTTACTGAGCTGGCACCGATAACAGTGTGTC
CCTCCGACGGCGTTTCGCACTTGCATCGCACTTCACTCTTAAGGAAGCCT
GGCTATTGAATTCGCCGCTTGAGGGCAAGAACCTCTTGACATTCCTGATC
GACCGCCCGCCCCACGCGCATCGGAGCTTGAGTTGTTTGGAACCACCATC
GCCATACTAACACTAAGCAACAGAATAGCATGCTGTTCGCGTACCTCTTC
GTTCATCAAGCGCTCAGCTCCAAGCGTTTTGTTTTTGTGCTGTCCTTCTT
ATTGGTTTTGTTTCTGTTTTTGTTCGTCTGTCTTGTTTTTCTTTTAGTTT
TTTTCTTGGTTTTGATACGTACAGTTATGTTATTTACTTGTTTCACTCTC
TGTTTATTTTCTTAAGTTACCTGATACCTACTTGTTTCTCCTTCGCCTTC
GTCTTTTTTTTTTTTCGATTTTTGTTTTCTTCTTGGTCGGGGGCAGCGGG
TGGAAACGATCAGGCGGCGGTGCTGCAGCAGCACCAAAGGGAGATGCTGG
ACAGGCTGAGGGAGATTCGCACCGCCCTGGCGACGGAGAGCGGCGACCTC
GAGTCCGTAAAGGCGGCCAATAGCGAGGTGGCCAAGCTTAGGGAGGTCAT
CAAGAGAAAAGACTACCGCATTCTGCACCTCACCCGGGCTTTGGATTCCG
CTGCTCCGGCGACTGTAGAACCGCCATCAGCATAGGCGATGCCGACGGCG
GCGACGGCGGCGAACTCCGCTTACCCGAGACACCGTTTTCGCCGTGTGTC
CGTCTTCAGTGCTATCTCTCCTTTTAGCGCGGAGCAAGCATCCTGAGCAT
GAAAGCCGTCCGGATTTTTTTGTGTCTTTTTGTCTTTTTGTTTGCAGCGC
CCGGTTGTAGTTCAGGGCTGCTGCTCCTGAAGGGGGCAGTCCCGACGGTG
GAAAAAAAGGGGCCGCGTTTTTCGTAAAATTCTCGCAATACGTCTGCTGT
GATTTTGTGAATTAATTTCCTCCTTTTTTTTTTCGCCTTGCGAAAAGCTA
AGCACGGTCCCTGGGAGCTACGAAACTGCAAAGGGCCATGAGAGCTACAG
TATATTCCTCGCACAACTCCAGCCCACACCGGAAACAGTACCATAACGGT
CCCTATCATATATACGGGTCGCACAGGGTGGAGTGGCGGACCTCATGACA
AGAAAATTGCTTTTGGCACCCACTACCCCTCTAGTCGTCGTCTGGCTTTG
TTCTTTAGAAGTTTAGGGTGATTGTCAGCCTGCGCCGGTCTTCATTGCTA
GCATCCTCGGCGCGGATGGTCTCATGTAGACGACGTGCTGGCGGGGCTTC
CATATATGTTGGCAGCGTTTTTTTCCGGGAATGTTTCCCAATTGTTTCCC
CTGATTTGGGGTTTCGAAAACGTGGAGGCGTTTTTTTCGCGGATGTTATT
TTGTCCTCCCACCCCGGGGATATGTTATCGTTGCTTGAACGCTGAGGTAT
GTAGGCAAACCATGTAATCGAGCCAACTGCAGGGCAATCTCGGCCCGGTG
CTGTTTTTGTTCACGATTCCTTCAGCAGTTTTGCCTCGGAAACTATGAAC
GGCAGCAATGTCTGCCCGAGTGGTGATCGACTTCGTGTTCTACATACACC
ATAGCAGTGGCATGCCCCGAAGTCTTTGAGCTAGGATTTGCTGCAGTCAG
ATGCAGCTTTAAGGGCACCCCGCGAGGTTACTTAGTAACAGAGCTCTCCA
CCCAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6798:7024..10828+

>mRNA_M-pyrifera_M_contig6798.16396.1 ID=mRNA_M-pyrifera_M_contig6798.16396.1|Name=mRNA_M-pyrifera_M_contig6798.16396.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig6798:7024..10828+ (Macrocystis pyrifera P11B4 male)
ATGGACTCCAAGATCAAGATGGACTCCAAGATCAAGGACATCACGGAGAA
GCTGTCGCGGCTGGAAGGGTTAGCAGGACATCACGGAGAAGCTGTCGCGG
CTGGAAGGGTTAGCAGCGGGTGGAAACGATCAGGCGGCGGTGCTGCAGCA
GCACCAAAGGGAGATGCTGGACAGGCTGAGGGAGATTCGCACCGCCCTGG
CGACGGAGAGCGGCGACCTCGAGTCCGTAAAGGCGGCCAATAGCGAGGTG
GCCAAGCTTAGGGAGGTCATCAAGAGAAAAGACTACCGCATTCTGCACCT
CACCCGGGCTTTGGATTCCGCTGCTCCGGCGACTGTAGAACCGCCATCAG
CATAGCGGGTGGAAACGATCAGGCGGCGGTGCTGCAGCAGCACCAAAGGG
AGATGCTGGACAGGCTGAGGGAGATTCGCACCGCCCTGGCGACGGAGAGC
GGCGACCTCGAGTCCGTAAAGGCGGCCAATAGCGAGGTGGCCAAGCTTAG
GGAGGTCATCAAGAGAAAAGACTACCGCATTCTGCACCTCACCCGGGCTT
TGGATTCCGCTGCTCCGGCGACTGTAGAACCGCCATCAGCATAG
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