mRNA_M-pyrifera_M_contig67913.16385.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67913.16385.1
Unique NamemRNA_M-pyrifera_M_contig67913.16385.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig67913.16385.1 vs. uniprot
Match: A0A3C1KUE6_9GAMM (Amino acid ABC transporter substrate-binding protein n=10 Tax=Halieaceae TaxID=1706372 RepID=A0A3C1KUE6_9GAMM)

HSP 1 Score: 223 bits (569), Expect = 1.170e-71
Identity = 110/114 (96.49%), Postives = 111/114 (97.37%), Query Frame = 1
Query:    1 EAGTTGEVWANTELPDAQLTPFADVSAGLAALRAGAIDLFVHDAPTSWLLATSDDYADLISQYHFLTDEQLAWAVRRDAPALAAELNRALATMRGNGTLEYIIDRWIPVTVEVP 342
            EA TTGE WANTELPDAQLTPFADVSAGLAALRAGAIDLFVHDAPTSWLLATSDDY DLISQYHFLT+EQLAWAVRRDAPALAAELNRALATMRGNGTLEYIIDRWIPVTVEVP
Sbjct:  159 EASTTGEAWANTELPDAQLTPFADVSAGLAALRAGAIDLFVHDAPTSWLLATSDDYGDLISQYHFLTEEQLAWAVRRDAPALAAELNRALATMRGNGTLEYIIDRWIPVTVEVP 272          
BLAST of mRNA_M-pyrifera_M_contig67913.16385.1 vs. uniprot
Match: A0A2E7C0U8_9GAMM (Amino acid ABC transporter substrate-binding protein n=2 Tax=Halieaceae TaxID=1706372 RepID=A0A2E7C0U8_9GAMM)

HSP 1 Score: 202 bits (513), Expect = 2.760e-63
Identity = 100/114 (87.72%), Postives = 104/114 (91.23%), Query Frame = 1
Query:    1 EAGTTGEVWANTELPDAQLTPFADVSAGLAALRAGAIDLFVHDAPTSWLLATSDDYADLISQYHFLTDEQLAWAVRRDAPALAAELNRALATMRGNGTLEYIIDRWIPVTVEVP 342
            EA TTGE WA  EL  AQ+TPF DV+AGLAALRAG+IDLFVHDAPTSWLLATSDDY DLISQYHFLT+EQLAWAVR DAPALAAELNRALATMR NGTLEYIIDRWIPVTVEVP
Sbjct:  150 EAATTGEDWARAELTAAQITPFKDVAAGLAALRAGSIDLFVHDAPTSWLLATSDDYPDLISQYHFLTEEQLAWAVRSDAPALAAELNRALATMRANGTLEYIIDRWIPVTVEVP 263          
BLAST of mRNA_M-pyrifera_M_contig67913.16385.1 vs. uniprot
Match: A0A2E0YXZ0_9GAMM (PBPb domain-containing protein n=1 Tax=Halioglobus sp. TaxID=2024834 RepID=A0A2E0YXZ0_9GAMM)

HSP 1 Score: 147 bits (372), Expect = 6.340e-42
Identity = 74/113 (65.49%), Postives = 88/113 (77.88%), Query Frame = 1
Query:    1 EAGTTGEVWANTELPDAQLTPFADVSAGLAALRAGAIDLFVHDAPTSWLLATSDDYADLISQYHFLTDEQLAWAVRRDAPALAAELNRALATMRGNGTLEYIIDRWIPVTVEV 339
            E GTTG ++A TELPDAQ++ +AD  A    LR   IDL++HDAPTSW LATS + +DL+S Y  LT E LAWAVRR+  ALA ELNRALATM+GNGTL YI++RWIPVTVEV
Sbjct:  154 EPGTTGAMFAATELPDAQVSFYADADAAFRGLREDQIDLYIHDAPTSWRLATSSEDSDLLSLYSPLTSEYLAWAVRRENGALAVELNRALATMKGNGTLRYILNRWIPVTVEV 266          
BLAST of mRNA_M-pyrifera_M_contig67913.16385.1 vs. uniprot
Match: A0A4Z0M635_9GAMM (Transporter substrate-binding domain-containing protein n=1 Tax=Haliea sp. SAOS-164 TaxID=2562682 RepID=A0A4Z0M635_9GAMM)

HSP 1 Score: 136 bits (342), Expect = 1.330e-37
Identity = 66/113 (58.41%), Postives = 84/113 (74.34%), Query Frame = 1
Query:    1 EAGTTGEVWANTELPDAQLTPFADVSAGLAALRAGAIDLFVHDAPTSWLLATSDDYADLISQYHFLTDEQLAWAVRRDAPALAAELNRALATMRGNGTLEYIIDRWIPVTVEV 339
            E GTTG+ +A  ELPDA++  F +     A LR   ID+++HDAPTSWLLA S +  DLIS Y  LT+E LAWAVR+D PAL A+LNR+L  MR NGTL+YI++RWIPVT++V
Sbjct:  137 EPGTTGDAFAERELPDAEIRYFENPEQAFAGLRGDVIDIYLHDAPTSWLLANSMENDDLISLYKPLTEEMLAWAVRKDNPALLADLNRSLQLMRQNGTLDYILNRWIPVTIQV 249          
BLAST of mRNA_M-pyrifera_M_contig67913.16385.1 vs. uniprot
Match: A0A496WS42_9GAMM (PBPb domain-containing protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A496WS42_9GAMM)

HSP 1 Score: 135 bits (341), Expect = 1.980e-37
Identity = 66/113 (58.41%), Postives = 84/113 (74.34%), Query Frame = 1
Query:    1 EAGTTGEVWANTELPDAQLTPFADVSAGLAALRAGAIDLFVHDAPTSWLLATSDDYADLISQYHFLTDEQLAWAVRRDAPALAAELNRALATMRGNGTLEYIIDRWIPVTVEV 339
            E GTTG  +   ++ DAQ+  F++ +A  A LR   IDL++HDAPTSW LATS + +DLISQY  LTDE LAWAVR+D   L +ELN+AL TM+GNGTL  I++RWIPVT+EV
Sbjct:  139 EPGTTGAFFVEDKIKDAQVKFFSNPAAAFAGLRNDEIDLYIHDAPTSWQLATSTENSDLISQYSMLTDEALAWAVRKDDHGLVSELNKALVTMKGNGTLRIILNRWIPVTIEV 251          
BLAST of mRNA_M-pyrifera_M_contig67913.16385.1 vs. uniprot
Match: A0A661HCE8_9GAMM (PBPb domain-containing protein n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A661HCE8_9GAMM)

HSP 1 Score: 135 bits (339), Expect = 3.670e-37
Identity = 69/113 (61.06%), Postives = 84/113 (74.34%), Query Frame = 1
Query:    1 EAGTTGEVWANTELPDAQLTPFADVSAGLAALRAGAIDLFVHDAPTSWLLATSDDYADLISQYHFLTDEQLAWAVRRDAPALAAELNRALATMRGNGTLEYIIDRWIPVTVEV 339
            E GTTG  +A  EL +AQL   AD +A  A+LR+  IDL++HDAPTSW LATS +  DLIS Y  LTDE LAW VR++  ALA ELN+ALA M+ +GTL YI++RWIPVTVEV
Sbjct:  136 EPGTTGAYFAEQELKNAQLKYVADAAAAFASLRSDEIDLYIHDAPTSWQLATSTENNDLISLYSPLTDEMLAWVVRKEDDALAGELNQALAKMKASGTLRYILNRWIPVTVEV 248          
BLAST of mRNA_M-pyrifera_M_contig67913.16385.1 vs. uniprot
Match: A0A3L7DZX3_9GAMM (PBPb domain-containing protein n=1 Tax=Seongchinamella sediminis TaxID=2283635 RepID=A0A3L7DZX3_9GAMM)

HSP 1 Score: 134 bits (338), Expect = 5.460e-37
Identity = 69/113 (61.06%), Postives = 85/113 (75.22%), Query Frame = 1
Query:    1 EAGTTGEVWANTELPDAQLTPFADVSAGLAALRAGAIDLFVHDAPTSWLLATSDDYADLISQYHFLTDEQLAWAVRRDAPALAAELNRALATMRGNGTLEYIIDRWIPVTVEV 339
            ++G+TG  +A  EL DA+++ F +     AALR   IDL++HDAPTSW LA S +  DLIS Y  LT+E LAWAVR+D  ALAAELNRAL  MRGNGTL+YI++RWIPVTVEV
Sbjct:  137 KSGSTGADFAERELQDAEVSQFDNTEQAFAALRNDLIDLYIHDAPTSWQLANSMENDDLISLYAPLTEEMLAWAVRKDDGALAAELNRALQLMRGNGTLQYILNRWIPVTVEV 249          
BLAST of mRNA_M-pyrifera_M_contig67913.16385.1 vs. uniprot
Match: A0A661H322_9GAMM (Amino acid ABC transporter substrate-binding protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661H322_9GAMM)

HSP 1 Score: 134 bits (337), Expect = 7.340e-37
Identity = 70/113 (61.95%), Postives = 82/113 (72.57%), Query Frame = 1
Query:    1 EAGTTGEVWANTELPDAQLTPFADVSAGLAALRAGAIDLFVHDAPTSWLLATSDDYADLISQYHFLTDEQLAWAVRRDAPALAAELNRALATMRGNGTLEYIIDRWIPVTVEV 339
            E GTTG  +A  EL DAQ+   AD +A  A LR   IDL++HDAPTSW LATS +  DLIS Y  LT+E LAWAVR+D   LA ELNRALA M+ +GTL YI++RWIPVTVEV
Sbjct:  136 EPGTTGASFAEQELKDAQIKYIADATAAFAGLRNDEIDLYIHDAPTSWQLATSTENNDLISLYSPLTNEMLAWAVRKDDDHLAGELNRALAKMKTSGTLRYILNRWIPVTVEV 248          
BLAST of mRNA_M-pyrifera_M_contig67913.16385.1 vs. uniprot
Match: A0A6C0U181_9GAMM (Amino acid ABC transporter substrate-binding protein n=1 Tax=Kineobactrum salinum TaxID=2708301 RepID=A0A6C0U181_9GAMM)

HSP 1 Score: 133 bits (335), Expect = 1.470e-36
Identity = 70/112 (62.50%), Postives = 79/112 (70.54%), Query Frame = 1
Query:    1 EAGTTGEVWANTELPDAQLTPFADVSAGLAALRAGAIDLFVHDAPTSWLLATSDDYADLISQYHFLTDEQLAWAVRRDAPALAAELNRALATMRGNGTLEYIIDRWIPVTVE 336
            E  + GE +A  EL +A ++ + D  A  AALRA  IDLFVH+A TSW LA   D ADLISQYH LT+E LAWAV RD  AL   LNRALA MRGNGTL YIIDRW+PV VE
Sbjct:  136 EPDSPGEAFARRELGEASVSLYPDPEAAFAALRADEIDLFVHEAATSWRLANDTDNADLISQYHPLTEEPLAWAVHRDNTALELALNRALAQMRGNGTLGYIIDRWVPVQVE 247          
BLAST of mRNA_M-pyrifera_M_contig67913.16385.1 vs. uniprot
Match: A0A4R5LT24_9GAMM (Transporter substrate-binding domain-containing protein n=1 Tax=Seongchinamella unica TaxID=2547392 RepID=A0A4R5LT24_9GAMM)

HSP 1 Score: 133 bits (334), Expect = 2.130e-36
Identity = 69/111 (62.16%), Postives = 81/111 (72.97%), Query Frame = 1
Query:    7 GTTGEVWANTELPDAQLTPFADVSAGLAALRAGAIDLFVHDAPTSWLLATSDDYADLISQYHFLTDEQLAWAVRRDAPALAAELNRALATMRGNGTLEYIIDRWIPVTVEV 339
            G+TG  +A  EL  AQ+  F +     AALR   IDL++HDAPTSW LA S D  DLIS Y  LT+E LAWAVR++  ALAAELNRAL  MRGNGTL+YI++RWIPVTVEV
Sbjct:  139 GSTGADFAERELQGAQVRQFENTQEAFAALRGDVIDLYIHDAPTSWQLANSMDNDDLISLYAPLTEEMLAWAVRKEDGALAAELNRALQLMRGNGTLQYILNRWIPVTVEV 249          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67913.16385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C1KUE6_9GAMM1.170e-7196.49Amino acid ABC transporter substrate-binding prote... [more]
A0A2E7C0U8_9GAMM2.760e-6387.72Amino acid ABC transporter substrate-binding prote... [more]
A0A2E0YXZ0_9GAMM6.340e-4265.49PBPb domain-containing protein n=1 Tax=Halioglobus... [more]
A0A4Z0M635_9GAMM1.330e-3758.41Transporter substrate-binding domain-containing pr... [more]
A0A496WS42_9GAMM1.980e-3758.41PBPb domain-containing protein n=2 Tax=Gammaproteo... [more]
A0A661HCE8_9GAMM3.670e-3761.06PBPb domain-containing protein n=3 Tax=Gammaproteo... [more]
A0A3L7DZX3_9GAMM5.460e-3761.06PBPb domain-containing protein n=1 Tax=Seongchinam... [more]
A0A661H322_9GAMM7.340e-3761.95Amino acid ABC transporter substrate-binding prote... [more]
A0A6C0U181_9GAMM1.470e-3662.50Amino acid ABC transporter substrate-binding prote... [more]
A0A4R5LT24_9GAMM2.130e-3662.16Transporter substrate-binding domain-containing pr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67913contigM-pyrifera_M_contig67913:2..346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score226.5
Seed ortholog evalue6.4e-57
Seed eggNOG ortholog1121937.AUHJ01000004_gene961
KEGG koko:K02030
KEGG TC3.A.1.3
KEGG ModuleM00236
Hectar predicted targeting categoryother localisation
EggNOG free text desc.amino acid transport
EggNOG OGsCOG0834@1,COG0834@2
COG Functional cat.ET
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko02000
Exons1
Model size345
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816570.500718-CDS-M-pyrifera_M_contig67913:1..3461622816570.500718-CDS-M-pyrifera_M_contig67913:1..346Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67913 2..346 +
1692278053.0036612-CDS-M-pyrifera_M_contig67913:1..3461692278053.0036612-CDS-M-pyrifera_M_contig67913:1..346Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67913 2..346 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67913.16385.1prot_M-pyrifera_M_contig67913.16385.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67913 2..346 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67913.16385.1

>prot_M-pyrifera_M_contig67913.16385.1 ID=prot_M-pyrifera_M_contig67913.16385.1|Name=mRNA_M-pyrifera_M_contig67913.16385.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
EAGTTGEVWANTELPDAQLTPFADVSAGLAALRAGAIDLFVHDAPTSWLL
ATSDDYADLISQYHFLTDEQLAWAVRRDAPALAAELNRALATMRGNGTLE
YIIDRWIPVTVEVP*
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mRNA from alignment at M-pyrifera_M_contig67913:2..346+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67913.16385.1 ID=mRNA_M-pyrifera_M_contig67913.16385.1|Name=mRNA_M-pyrifera_M_contig67913.16385.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig67913:2..346+ (Macrocystis pyrifera P11B4 male)
GAGGCGGGTACCACCGGCGAGGTCTGGGCAAACACTGAACTCCCCGACGC GCAGCTTACGCCATTTGCGGACGTGTCTGCCGGACTGGCGGCACTGCGCG CGGGTGCAATTGACCTGTTCGTGCACGATGCCCCGACCAGTTGGCTGCTG GCCACCTCTGACGACTATGCTGACCTGATTAGCCAGTACCACTTTCTCAC TGACGAACAGCTCGCCTGGGCAGTGCGCCGGGATGCGCCTGCGCTGGCCG CCGAGCTCAATCGTGCTCTGGCGACCATGCGCGGGAATGGCACGCTGGAA TACATTATCGACCGCTGGATACCGGTGACGGTCGAGGTGCCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67913:2..346+

>mRNA_M-pyrifera_M_contig67913.16385.1 ID=mRNA_M-pyrifera_M_contig67913.16385.1|Name=mRNA_M-pyrifera_M_contig67913.16385.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig67913:2..346+ (Macrocystis pyrifera P11B4 male)
GAGGCGGGTACCACCGGCGAGGTCTGGGCAAACACTGAACTCCCCGACGC
GCAGCTTACGCCATTTGCGGACGTGTCTGCCGGACTGGCGGCACTGCGCG
CGGGTGCAATTGACCTGTTCGTGCACGATGCCCCGACCAGTTGGCTGCTG
GCCACCTCTGACGACTATGCTGACCTGATTAGCCAGTACCACTTTCTCAC
TGACGAACAGCTCGCCTGGGCAGTGCGCCGGGATGCGCCTGCGCTGGCCG
CCGAGCTCAATCGTGCTCTGGCGACCATGCGCGGGAATGGCACGCTGGAA
TACATTATCGACCGCTGGATACCGGTGACGGTCGAGGTGCCCTGAGAGGC
GGGTACCACCGGCGAGGTCTGGGCAAACACTGAACTCCCCGACGCGCAGC
TTACGCCATTTGCGGACGTGTCTGCCGGACTGGCGGCACTGCGCGCGGGT
GCAATTGACCTGTTCGTGCACGATGCCCCGACCAGTTGGCTGCTGGCCAC
CTCTGACGACTATGCTGACCTGATTAGCCAGTACCACTTTCTCACTGACG
AACAGCTCGCCTGGGCAGTGCGCCGGGATGCGCCTGCGCTGGCCGCCGAG
CTCAATCGTGCTCTGGCGACCATGCGCGGGAATGGCACGCTGGAATACAT
TATCGACCGCTGGATACCGGTGACGGTCGAGGTGCCCTGA
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