mRNA_M-pyrifera_M_contig67879.16373.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67879.16373.1
Unique NamemRNA_M-pyrifera_M_contig67879.16373.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig67879.16373.1 vs. uniprot
Match: A0A1V0IJK4_9ROSA (Photosystem II reaction center protein K n=75 Tax=Mesangiospermae TaxID=1437183 RepID=A0A1V0IJK4_9ROSA)

HSP 1 Score: 105 bits (263), Expect = 7.000e-29
Identity = 58/61 (95.08%), Postives = 59/61 (96.72%), Query Frame = 1 
Query:    1 MLNIFSLIC--LNSALYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 177
            MLNIFSLIC  LNSALYSSSFFVAKLPEAYAFLNP+VDVMPVIPLFFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLICIYLNSALYSSSFFVAKLPEAYAFLNPLVDVMPVIPLFFFLLAFVWQAAVSFR 61
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BLAST of mRNA_M-pyrifera_M_contig67879.16373.1 vs. uniprot
Match: PSBK_HELAN (Photosystem II reaction center protein K n=1377 Tax=Pentapetalae TaxID=1437201 RepID=PSBK_HELAN)

HSP 1 Score: 105 bits (262), Expect = 9.450e-29
Identity = 56/59 (94.92%), Postives = 56/59 (94.92%), Query Frame = 1 
Query:    1 MLNIFSLICLNSALYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 177
            MLNIFSLICLNSALY SS F AKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLICLNSALYPSSLFFAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 59
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BLAST of mRNA_M-pyrifera_M_contig67879.16373.1 vs. uniprot
Match: PSBK_SPIOL (Photosystem II reaction center protein K n=29 Tax=Pentapetalae TaxID=1437201 RepID=PSBK_SPIOL)

HSP 1 Score: 104 bits (259), Expect = 2.710e-28
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 1 
Query:    1 MLNIFSLICLNSALYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 177
            MLNIFSLICLNSALYSSSFF  KLPEAYAFL+PIVD MPVIPLFFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLICLNSALYSSSFFFGKLPEAYAFLSPIVDFMPVIPLFFFLLAFVWQAAVSFR 59
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BLAST of mRNA_M-pyrifera_M_contig67879.16373.1 vs. uniprot
Match: A0A2P6P1B9_ROSCH (Photosystem II reaction center protein K n=40 Tax=rosids TaxID=71275 RepID=A0A2P6P1B9_ROSCH)

HSP 1 Score: 104 bits (259), Expect = 3.090e-28
Identity = 58/61 (95.08%), Postives = 58/61 (95.08%), Query Frame = 1 
Query:    1 MLNIFSLIC--LNSALYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 177
            MLNI SLIC  LNSALYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR
Sbjct:    4 MLNILSLICIYLNSALYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 64
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BLAST of mRNA_M-pyrifera_M_contig67879.16373.1 vs. uniprot
Match: PSBK_OENEH (Photosystem II reaction center protein K n=13 Tax=Oenothera TaxID=3939 RepID=PSBK_OENEH)

HSP 1 Score: 103 bits (258), Expect = 3.850e-28
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 1 
Query:    1 MLNIFSLICLNSALYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 177
            MLNIFSLICLNS LYSS FF+AKLPEAYAFLNPIVDVMPVIPLFF LLAFVWQAAVSFR
Sbjct:    1 MLNIFSLICLNSDLYSSRFFLAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 59
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BLAST of mRNA_M-pyrifera_M_contig67879.16373.1 vs. uniprot
Match: A0A0U1Y866_9ERIC (Photosystem II reaction center protein K n=76 Tax=Pentapetalae TaxID=1437201 RepID=A0A0U1Y866_9ERIC)

HSP 1 Score: 102 bits (255), Expect = 1.110e-27
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 MLNIFSLICLNSALYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 177
            MLNIFSLIC+NS LYSS F  AKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLICINSVLYSSHFVFAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 59
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BLAST of mRNA_M-pyrifera_M_contig67879.16373.1 vs. uniprot
Match: A0A6C0N8B8_9LAMI (Photosystem II reaction center protein K n=1 Tax=Incarvillea arguta TaxID=291310 RepID=A0A6C0N8B8_9LAMI)

HSP 1 Score: 103 bits (256), Expect = 2.280e-27
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 MLNIFSLICLNSALYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 177
            MLNI SLIC+NSA YSSSFF  KLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR
Sbjct:   40 MLNIVSLICINSAFYSSSFFFGKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 98
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BLAST of mRNA_M-pyrifera_M_contig67879.16373.1 vs. uniprot
Match: UPI001D0FB483 (PsbK n=1 Tax=Impatiens davidii TaxID=253001 RepID=UPI001D0FB483)

HSP 1 Score: 101 bits (252), Expect = 3.180e-27
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 MLNIFSLICLNSALYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 177
            MLNI +LIC+NSALY SSFF AKLPE YAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR
Sbjct:    1 MLNILNLICINSALYLSSFFFAKLPEVYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 59
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BLAST of mRNA_M-pyrifera_M_contig67879.16373.1 vs. uniprot
Match: PSBK_CALFG (Photosystem II reaction center protein K n=324 Tax=Magnoliopsida TaxID=3398 RepID=PSBK_CALFG)

HSP 1 Score: 100 bits (249), Expect = 9.120e-27
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 MLNIFSLICLNSALYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 177
            MLNIFSLICLNSAL+SSSFF AKLPEAYAF NPIVDVMPVIP+ FFLLA VWQAAVSFR
Sbjct:    1 MLNIFSLICLNSALHSSSFFFAKLPEAYAFFNPIVDVMPVIPVLFFLLALVWQAAVSFR 59
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BLAST of mRNA_M-pyrifera_M_contig67879.16373.1 vs. uniprot
Match: A0A411K689_9CARY (Photosystem II reaction center protein K n=49 Tax=Pentapetalae TaxID=1437201 RepID=A0A411K689_9CARY)

HSP 1 Score: 100 bits (249), Expect = 9.120e-27
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 MLNIFSLICLNSALYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 177
            MLNI SLICLNSALYSSSFF+ KLPEAYAFL+PIVD MPVIPL FFLLAFVWQAAVSFR
Sbjct:    1 MLNILSLICLNSALYSSSFFLVKLPEAYAFLSPIVDFMPVIPLLFFLLAFVWQAAVSFR 59
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67879.16373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1V0IJK4_9ROSA7.000e-2995.08Photosystem II reaction center protein K n=75 Tax=... [more]
PSBK_HELAN9.450e-2994.92Photosystem II reaction center protein K n=1377 Ta... [more]
PSBK_SPIOL2.710e-2893.22Photosystem II reaction center protein K n=29 Tax=... [more]
A0A2P6P1B9_ROSCH3.090e-2895.08Photosystem II reaction center protein K n=40 Tax=... [more]
PSBK_OENEH3.850e-2893.22Photosystem II reaction center protein K n=13 Tax=... [more]
A0A0U1Y866_9ERIC1.110e-2791.53Photosystem II reaction center protein K n=76 Tax=... [more]
A0A6C0N8B8_9LAMI2.280e-2791.53Photosystem II reaction center protein K n=1 Tax=I... [more]
UPI001D0FB4833.180e-2789.83PsbK n=1 Tax=Impatiens davidii TaxID=253001 RepID=... [more]
PSBK_CALFG9.120e-2789.83Photosystem II reaction center protein K n=324 Tax... [more]
A0A411K689_9CARY9.120e-2789.83Photosystem II reaction center protein K n=49 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67879contigM-pyrifera_M_contig67879:335..514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score104.4
Seed ortholog evalue1.9e-20
Seed eggNOG ortholog4155.Migut.D01333.1.p
Preferred namepsbK
KEGG koko:K02710,ko:K02712
KEGG Pathwayko00195,ko01100,map00195,map01100
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Photosystem II reaction center protein K
EggNOG OGs2E3TA@1,2SAFC@2759,37XB0@33090,3GKW4@35493
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Exons1
Model size180
Cds size180
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816569.4659193-CDS-M-pyrifera_M_contig67879:334..5141622816569.4659193-CDS-M-pyrifera_M_contig67879:334..514Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67879 335..514 +
1692278052.3481221-CDS-M-pyrifera_M_contig67879:334..5141692278052.3481221-CDS-M-pyrifera_M_contig67879:334..514Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67879 335..514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67879.16373.1prot_M-pyrifera_M_contig67879.16373.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67879 335..514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67879.16373.1

>prot_M-pyrifera_M_contig67879.16373.1 ID=prot_M-pyrifera_M_contig67879.16373.1|Name=mRNA_M-pyrifera_M_contig67879.16373.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=60bp
MLNIFSLICLNSALYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAF
VWQAAVSFR*
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mRNA from alignment at M-pyrifera_M_contig67879:335..514+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67879.16373.1 ID=mRNA_M-pyrifera_M_contig67879.16373.1|Name=mRNA_M-pyrifera_M_contig67879.16373.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=180bp|location=Sequence derived from alignment at M-pyrifera_M_contig67879:335..514+ (Macrocystis pyrifera P11B4 male)
ATGCTTAATATATTTAGTTTGATCTGTCTTAATTCCGCTCTTTATTCAAG
TAGTTTTTTCGTCGCCAAATTGCCCGAGGCCTACGCTTTTTTAAATCCAA
TCGTAGATGTTATGCCAGTAATACCCCTGTTTTTTTTTCTGTTAGCCTTT
GTTTGGCAAGCTGCTGTAAGTTTTCGATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67879:335..514+

>mRNA_M-pyrifera_M_contig67879.16373.1 ID=mRNA_M-pyrifera_M_contig67879.16373.1|Name=mRNA_M-pyrifera_M_contig67879.16373.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig67879:335..514+ (Macrocystis pyrifera P11B4 male)
ATGCTTAATATATTTAGTTTGATCTGTCTTAATTCCGCTCTTTATTCAAG
TAGTTTTTTCGTCGCCAAATTGCCCGAGGCCTACGCTTTTTTAAATCCAA
TCGTAGATGTTATGCCAGTAATACCCCTGTTTTTTTTTCTGTTAGCCTTT
GTTTGGCAAGCTGCTGTAAGTTTTCGATGAATGCTTAATATATTTAGTTT
GATCTGTCTTAATTCCGCTCTTTATTCAAGTAGTTTTTTCGTCGCCAAAT
TGCCCGAGGCCTACGCTTTTTTAAATCCAATCGTAGATGTTATGCCAGTA
ATACCCCTGTTTTTTTTTCTGTTAGCCTTTGTTTGGCAAGCTGCTGTAAG
TTTTCGATGA
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