mRNA_M-pyrifera_M_contig6784.16368.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6784.16368.1
Unique NamemRNA_M-pyrifera_M_contig6784.16368.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig6784.16368.1 vs. uniprot
Match: A0A6H5JP50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP50_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.380e-14
Identity = 45/108 (41.67%), Postives = 59/108 (54.63%), Query Frame = 1 
Query:   16 QEVSCALAAGSTGPEAFTLLLRLLSNFFDRSDTAASHTKFHNLGVPNGTPFRNFIRTLRGVVPAATGTERVLAPGWRLVCRWSGGQLTSSTPA*CPRCTREVWLRYPG 339
            Q+V   L  G+TGPEAFTLLLRLLS  FD  D   S  +    GV NGT F +++R  R +V + TG+ERVLAP   +V       ++   P+  P       + YPG
Sbjct:  117 QQVKRRLDDGATGPEAFTLLLRLLSEQFDVGDRQESFLRLQEFGVSNGTLFADYLRAFRLLVSSVTGSERVLAPSVSMVLEIVRNSVSKQFPSLAP-------MLYPG 217
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6784.16368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JP50_9PHAE2.380e-1441.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6784contigM-pyrifera_M_contig6784:1294..2150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size399
Cds size297
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6784.16368.1prot_M-pyrifera_M_contig6784.16368.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6784 1294..2050 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816569.1942184-CDS-M-pyrifera_M_contig6784:1293..13141622816569.1942184-CDS-M-pyrifera_M_contig6784:1293..1314Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6784 1294..1314 +
1692278052.1541636-CDS-M-pyrifera_M_contig6784:1293..13141692278052.1541636-CDS-M-pyrifera_M_contig6784:1293..1314Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6784 1294..1314 +
1622816569.2086458-CDS-M-pyrifera_M_contig6784:1774..20501622816569.2086458-CDS-M-pyrifera_M_contig6784:1774..2050Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6784 1775..2050 +
1692278052.167659-CDS-M-pyrifera_M_contig6784:1774..20501692278052.167659-CDS-M-pyrifera_M_contig6784:1774..2050Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6784 1775..2050 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816569.220465-UTR-M-pyrifera_M_contig6784:2050..21501622816569.220465-UTR-M-pyrifera_M_contig6784:2050..2150Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6784 2051..2150 +
1692278052.1855679-UTR-M-pyrifera_M_contig6784:2050..21501692278052.1855679-UTR-M-pyrifera_M_contig6784:2050..2150Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6784 2051..2150 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6784.16368.1

>prot_M-pyrifera_M_contig6784.16368.1 ID=prot_M-pyrifera_M_contig6784.16368.1|Name=mRNA_M-pyrifera_M_contig6784.16368.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
GHDQLQEVSCALAAGSTGPEAFTLLLRLLSNFFDRSDTAASHTKFHNLGV
PNGTPFRNFIRTLRGVVPAATGTERVLAPGWRLVCRWSGGQLTSSTPA*
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mRNA from alignment at M-pyrifera_M_contig6784:1294..2150+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6784.16368.1 ID=mRNA_M-pyrifera_M_contig6784.16368.1|Name=mRNA_M-pyrifera_M_contig6784.16368.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=857bp|location=Sequence derived from alignment at M-pyrifera_M_contig6784:1294..2150+ (Macrocystis pyrifera P11B4 male)
GGTCACGACCAGCTCCAAGAGGCAAGTGGTTCCCTCGCTGACCGATGTCG
TTTCTTCCGCCGCGTTTCTTGGTCGCTTGACCATGTCCGATAACCGCGCC
ATGCCCTTGTCGTCTAACCTCGCTCACGCTCGAACATCGGCGATCGACTC
CGCCGCCGAAGCGACCGGCAAAAAGCTCACCGCGGACGTTCAACTGGCGT
ACAAACACCCAGGACTCAAAGACATCTCACGCATTTCTGTCCTACCTTTT
CCCTCTTCGATCAACCCTTCCGATGCCGCGCAACAACTCACTCGTTCGGT
CAAGACCTCCGCCTCTAATATTCTCCTGATGTGCAACGATGGCAACCATG
AAGGCCTTAGTTCTACCGATTGGATCCCCGGCTGGGAGTACCCCTTTCAG
AAATCCGTCGCGCGTGCCATTACGCCTGACACGCCTACGACTGCCCCCCT
CACTACCTTGACGAATGATTTTTCCGGACAGGTGTCGTGCGCCCTTGCAG
CCGGATCGACAGGACCGGAGGCGTTCACCCTCCTCCTGAGGTTACTGAGC
AACTTCTTCGACCGCTCCGACACGGCGGCCAGCCACACTAAGTTCCACAA
TCTTGGCGTGCCTAACGGGACTCCTTTTCGCAATTTTATCCGTACATTAC
GAGGTGTGGTGCCGGCAGCGACGGGGACTGAGCGTGTTTTGGCACCGGGG
TGGAGGTTGGTTTGCAGGTGGTCTGGAGGGCAGTTAACGAGCAGTACCCC
AGCTTGATGCCCACGCTGTACCCGGGAGGTTTGGCTACGATACCCAGGCC
GTTCGGCACTTTGGATGCCATGTGGTTGGCTTTCGAGACTCTCGCGAATA
ATAAGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6784:1294..2150+

>mRNA_M-pyrifera_M_contig6784.16368.1 ID=mRNA_M-pyrifera_M_contig6784.16368.1|Name=mRNA_M-pyrifera_M_contig6784.16368.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig6784:1294..2150+ (Macrocystis pyrifera P11B4 male)
GGTCACGACCAGCTCCAAGAGGGTCACGACCAGCTCCAAGAGGTGTCGTG
CGCCCTTGCAGCCGGATCGACAGGACCGGAGGCGTTCACCCTCCTCCTGA
GGTTACTGAGCAACTTCTTCGACCGCTCCGACACGGCGGCCAGCCACACT
AAGTTCCACAATCTTGGCGTGCCTAACGGGACTCCTTTTCGCAATTTTAT
CCGTACATTACGAGGTGTGGTGCCGGCAGCGACGGGGACTGAGCGTGTTT
TGGCACCGGGGTGGAGGTTGGTTTGCAGGTGGTCTGGAGGGCAGTTAACG
AGCAGTACCCCAGCTTGAGTGTCGTGCGCCCTTGCAGCCGGATCGACAGG
ACCGGAGGCGTTCACCCTCCTCCTGAGGTTACTGAGCAACTTCTTCGACC
GCTCCGACACGGCGGCCAGCCACACTAAGTTCCACAATCTTGGCGTGCCT
AACGGGACTCCTTTTCGCAATTTTATCCGTACATTACGAGGTGTGGTGCC
GGCAGCGACGGGGACTGAGCGTGTTTTGGCACCGGGGTGGAGGTTGGTTT
GCAGGTGGTCTGGAGGGCAGTTAACGAGCAGTACCCCAGCTTGA
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