mRNA_M-pyrifera_M_contig67815.16363.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67815.16363.1
Unique NamemRNA_M-pyrifera_M_contig67815.16363.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig67815.16363.1 vs. uniprot
Match: A0A812Z575_9DINO (EOGT protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812Z575_9DINO)

HSP 1 Score: 144 bits (364), Expect = 1.090e-36
Identity = 86/186 (46.24%), Postives = 103/186 (55.38%), Query Frame = 1 
Query:   13 CWSHYDFGMLDAWGAAAKDVCAGAPPSAVGKAASVRCRERELKNVPAPTRPHVVCDASWVQLDFSLSSPAKCPRFRPHYKCDGPPFFQAYAPG-FQKAACSLTAAAAPGN-FPRDHLRDIFASLQGSWGCADGPEVDERQPCKRENPRSV-LLVTRERGEFANLFHVLTDFLNAFFALHLAGGMQG 561
            C +H+DFG+   W AA+K  C G         +++ CR     ++P PTRPH +CDA  V +DFS  +PA C + RP YKC G   F  Y  G F KAAC  TA       +PRDHLRD+F      WG      VD   P     P  V LLVTRERGE ANLFH +TDFLNAF ALH  G + G
Sbjct:  151 CKNHFDFGLASEWRAASKAFCEGGT-------SALTCRVIVDDHMPTPTRPHTICDAEEVVMDFSHLAPADCLKHRPGYKCGGDKVFWRYPSGAFTKAACKNTAEFDVNTKWPRDHLRDLF----DGWGT-----VDALPPTSVSAPSQVTLLVTRERGEHANLFHTMTDFLNAFIALHTTGVIDG 320
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BLAST of mRNA_M-pyrifera_M_contig67815.16363.1 vs. uniprot
Match: A0A087SKP0_AUXPR (Uncharacterized protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SKP0_AUXPR)

HSP 1 Score: 115 bits (287), Expect = 4.030e-27
Identity = 74/198 (37.37%), Postives = 101/198 (51.01%), Query Frame = 1 
Query:   13 CWSHYDFGMLDAWGAAAKDVCAGAPPSAVGKAASVRCRERELKNVPAPTRPHVVCDASWVQLDFSLSSPAKCPRFRPHYKCDGPPFFQAYAPGFQKAACSLTAAAAPGNFPRDHLRDIFASLQ-GSWGCADGPEVDERQPCKRENPRSVLLVTRERGEFANLFHVLTDFLNAFFALHLAGGMQGVGVVLLDEQPQGPF 603
            C  H+ +G L  W A A   C  A     G    V CR    +++PA + PH +CD   + +D S  + A+CPR RP Y C+ P + + Y  G  +  C   + +   + P DH RDI+ ++  G+ G      + +  P     PR  L VTRE  E ANLFH LTD LNAF  L + G  Q  GV+LLD+ P GPF
Sbjct:   76 CDEHFGYGWLRRWNATAAPRCWTAEGHLPGS--RVTCRSVRDEHMPAASAPHAMCDVRGLVVDTSRMTRARCPRHRPGYLCETPTYHR-YGQGAFELGCDWPSFSLADHSP-DHGRDIYQAMAAGARGWLSPLVLRDTAP----EPRPTLFVTREVREHANLFHCLTDLLNAFLTLRMLG-WQTWGVLLLDDHPPGPF 264
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BLAST of mRNA_M-pyrifera_M_contig67815.16363.1 vs. uniprot
Match: A0A3M7L5E0_AUXPR (Uncharacterized protein (Fragment) n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A3M7L5E0_AUXPR)

HSP 1 Score: 115 bits (287), Expect = 2.910e-26
Identity = 74/198 (37.37%), Postives = 101/198 (51.01%), Query Frame = 1 
Query:   13 CWSHYDFGMLDAWGAAAKDVCAGAPPSAVGKAASVRCRERELKNVPAPTRPHVVCDASWVQLDFSLSSPAKCPRFRPHYKCDGPPFFQAYAPGFQKAACSLTAAAAPGNFPRDHLRDIFASLQ-GSWGCADGPEVDERQPCKRENPRSVLLVTRERGEFANLFHVLTDFLNAFFALHLAGGMQGVGVVLLDEQPQGPF 603
            C  H+ +G L  W A A   C  A     G    V CR    +++PA + PH +CD   + +D S  + A+CPR RP Y C+ P + + Y  G  +  C   + +   + P DH RDI+ ++  G+ G      + +  P     PR  L VTRE  E ANLFH LTD LNAF  L + G  Q  GV+LLD+ P GPF
Sbjct:   81 CDEHFGYGWLRRWNATAAPRCWTAEGHLPGS--RVTCRSVRDEHMPAASAPHAMCDVRGLVVDTSRMTRARCPRHRPGYLCETPTYHR-YGQGAFELGCDWPSFSLADHSP-DHGRDIYQAMAAGARGWLSPLVLRDTAP----EPRPTLFVTREVREHANLFHCLTDLLNAFLTLRMLG-WQTWGVLLLDDHPPGPF 269
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BLAST of mRNA_M-pyrifera_M_contig67815.16363.1 vs. uniprot
Match: A0A7S0LW54_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LW54_9CRYP)

HSP 1 Score: 98.2 bits (243), Expect = 7.720e-22
Identity = 45/118 (38.14%), Postives = 61/118 (51.69%), Query Frame = 1 
Query:    4 DQECWSHYDFGMLDAWGAAAKDVCAGAPPSAVGKAASVRCRERELKNVPAPTRPHVVCDASWVQLDFSLSSPAKCPRFRPHYKCDGPPFFQAYAPGFQKAACSLTAAAAPGNFPRDHL 357
            D+ CW+H+DFGMLDAW       C     +     + +RCR +   ++P PT PH +CD + + LD     P  C   RP+Y C+ P  + +Y PG   A CS  A   P  FP DHL
Sbjct:  105 DEVCWTHFDFGMLDAWNKNEAFFCEAETSTPPSHKSWLRCRVQTDDHLPPPTAPHTMCDGANIDLDLEKMEPIDCLPSRPNYNCEPPSIWYSYPPGALSANCSRNARFTPDQFPNDHL 222
[Close]
BLAST of mRNA_M-pyrifera_M_contig67815.16363.1 vs. uniprot
Match: A0A7S0MNG9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MNG9_9CRYP)

HSP 1 Score: 63.9 bits (154), Expect = 1.060e-9
Identity = 42/96 (43.75%), Postives = 53/96 (55.21%), Query Frame = 1 
Query:  355 LRDIFASLQGSWGCADGPEVDERQPCKRENPRS---VLLVTRERGEFANLFHVLTDFLNAFFALHLAG----------GMQGVGVVLLDEQPQGPF 603
            L+D+FA+ +G         V+E  P      R    VL+V RERGE ANLFH  TDFLN F  LH AG          G++ V ++LLDEQ +GPF
Sbjct:    1 LKDMFAAFRG--------HVEEGAPSTDTALRLAPVVLVVARERGEHANLFHATTDFLNIFLTLHAAGIIAGAAGARAGLEDVQLLLLDEQ-RGPF 87
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67815.16363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A812Z575_9DINO1.090e-3646.24EOGT protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A087SKP0_AUXPR4.030e-2737.37Uncharacterized protein n=1 Tax=Auxenochlorella pr... [more]
A0A3M7L5E0_AUXPR2.910e-2637.37Uncharacterized protein (Fragment) n=2 Tax=Auxenoc... [more]
A0A7S0LW54_9CRYP7.720e-2238.14Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S0MNG9_9CRYP1.060e-943.75Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67815contigM-pyrifera_M_contig67815:570..1253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue9.6e-24
Seed eggNOG ortholog3075.A0A087SKP0
Hectar predicted targeting categoryother localisation
EggNOG OGs2D61J@1,2T0E2@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size603
Cds size603
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67815.16363.1prot_M-pyrifera_M_contig67815.16363.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67815 570..1253 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816568.9619708-CDS-M-pyrifera_M_contig67815:569..9531622816568.9619708-CDS-M-pyrifera_M_contig67815:569..953Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67815 570..953 +
1692278052.0181034-CDS-M-pyrifera_M_contig67815:569..9531692278052.0181034-CDS-M-pyrifera_M_contig67815:569..953Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67815 570..953 +
1622816568.9731812-CDS-M-pyrifera_M_contig67815:1001..11661622816568.9731812-CDS-M-pyrifera_M_contig67815:1001..1166Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67815 1002..1166 +
1692278052.0292933-CDS-M-pyrifera_M_contig67815:1001..11661692278052.0292933-CDS-M-pyrifera_M_contig67815:1001..1166Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67815 1002..1166 +
1622816568.9920568-CDS-M-pyrifera_M_contig67815:1199..12531622816568.9920568-CDS-M-pyrifera_M_contig67815:1199..1253Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67815 1200..1253 +
1692278052.0381746-CDS-M-pyrifera_M_contig67815:1199..12531692278052.0381746-CDS-M-pyrifera_M_contig67815:1199..1253Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67815 1200..1253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67815.16363.1

>prot_M-pyrifera_M_contig67815.16363.1 ID=prot_M-pyrifera_M_contig67815.16363.1|Name=mRNA_M-pyrifera_M_contig67815.16363.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=201bp
MDQECWSHYDFGMLDAWGAAAKDVCAGAPPSAVGKAASVRCRERELKNVP
APTRPHVVCDASWVQLDFSLSSPAKCPRFRPHYKCDGPPFFQAYAPGFQK
AACSLTAAAAPGNFPRDHLRDIFASLQGSWGCADGPEVDERQPCKRENPR
SVLLVTRERGEFANLFHVLTDFLNAFFALHLAGGMQGVGVVLLDEQPQGP
F
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mRNA from alignment at M-pyrifera_M_contig67815:570..1253+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67815.16363.1 ID=mRNA_M-pyrifera_M_contig67815.16363.1|Name=mRNA_M-pyrifera_M_contig67815.16363.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig67815:570..1253+ (Macrocystis pyrifera P11B4 male)
ATGGACCAGGAGTGCTGGAGCCACTACGACTTTGGGATGCTGGACGCCTG
GGGAGCCGCTGCCAAAGATGTTTGTGCTGGCGCCCCGCCTTCTGCAGTCG
GAAAAGCGGCTTCAGTGCGTTGTCGCGAACGCGAGCTCAAGAACGTGCCG
GCTCCCACGCGGCCGCACGTGGTCTGTGACGCATCGTGGGTGCAGCTGGA
CTTTAGCCTCTCTTCGCCCGCCAAGTGCCCCAGATTTCGACCTCACTACA
AATGCGACGGCCCACCCTTTTTCCAAGCGTATGCGCCGGGCTTCCAAAAG
GCAGCTTGCTCGCTCACGGCAGCTGCAGCGCCTGGAAATTTCCCGAGAGA
CCATTTGCGGGACATTTTCGCGTCCCTGCAAGGAGTTGGACCTGGAGATC
CCATGGAAATCGCTGAGCCAGGAGCCACACAGAGCTGGGGCTGTGCGGAT
GGACCGGAGGTCGATGAGAGACAGCCCTGCAAGCGGGAAAACCCTCGATC
GGTGCTGTTGGTGACGCGGGAGCGCGGAGAATTCGCCAACCTCTTCCACG
TGCTCACCGATTTCCTCAACGCCTTCTTCGCGCTGCACCTGGCCGGGGTG
GTGGATGGGTACGACGTGGGCAGTCGCGAGGGCATGCAGGGCGTTGGGGT
GGTGCTGTTGGACGAGCAGCCCCAAGGGCCGTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67815:570..1253+

>mRNA_M-pyrifera_M_contig67815.16363.1 ID=mRNA_M-pyrifera_M_contig67815.16363.1|Name=mRNA_M-pyrifera_M_contig67815.16363.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1206bp|location=Sequence derived from alignment at M-pyrifera_M_contig67815:570..1253+ (Macrocystis pyrifera P11B4 male)
ATGGACCAGGAGTGCTGGAGCCACTACGACTTTGGGATGCTGGACGCCTG
GGGAGCCGCTGCCAAAGATGTTTGTGCTGGCGCCCCGCCTTCTGCAGTCG
GAAAAGCGGCTTCAGTGCGTTGTCGCGAACGCGAGCTCAAGAACGTGCCG
GCTCCCACGCGGCCGCACGTGGTCTGTGACGCATCGTGGGTGCAGCTGGA
CTTTAGCCTCTCTTCGCCCGCCAAGTGCCCCAGATTTCGACCTCACTACA
AATGCGACGGCCCACCCTTTTTCCAAGCGTATGCGCCGGGCTTCCAAAAG
GCAGCTTGCTCGCTCACGGCAGCTGCAGCGCCTGGAAATTTCCCGAGAGA
CCATTTGCGGGACATTTTCGCGTCCCTGCAAGGAATGGACCAGGAGTGCT
GGAGCCACTACGACTTTGGGATGCTGGACGCCTGGGGAGCCGCTGCCAAA
GATGTTTGTGCTGGCGCCCCGCCTTCTGCAGTCGGAAAAGCGGCTTCAGT
GCGTTGTCGCGAACGCGAGCTCAAGAACGTGCCGGCTCCCACGCGGCCGC
ACGTGGTCTGTGACGCATCGTGGGTGCAGCTGGACTTTAGCCTCTCTTCG
CCCGCCAAGTGCCCCAGATTTCGACCTCACTACAAATGCGACGGCCCACC
CTTTTTCCAAGCGTATGCGCCGGGCTTCCAAAAGGCAGCTTGCTCGCTCA
CGGCAGCTGCAGCGCCTGGAAATTTCCCGAGAGACCATTTGCGGGACATT
TTCGCGTCCCTGCAAGGAAGCTGGGGCTGTGCGGATGGACCGGAGGTCGA
TGAGAGACAGCCCTGCAAGCGGGAAAACCCTCGATCGGTGCTGTTGGTGA
CGCGGGAGCGCGGAGAATTCGCCAACCTCTTCCACGTGCTCACCGATTTC
CTCAACGCCTTCTTCGCGCTGCACCTGGCCGGGAGCTGGGGCTGTGCGGA
TGGACCGGAGGTCGATGAGAGACAGCCCTGCAAGCGGGAAAACCCTCGAT
CGGTGCTGTTGGTGACGCGGGAGCGCGGAGAATTCGCCAACCTCTTCCAC
GTGCTCACCGATTTCCTCAACGCCTTCTTCGCGCTGCACCTGGCCGGGGG
CATGCAGGGCGTTGGGGTGGTGCTGTTGGACGAGCAGCCCCAAGGGCCGT
TTGGCATGCAGGGCGTTGGGGTGGTGCTGTTGGACGAGCAGCCCCAAGGG
CCGTTT
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