prot_M-pyrifera_M_contig6779.16357.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig6779.16357.1
Unique Nameprot_M-pyrifera_M_contig6779.16357.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length516
Homology
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BLAST of mRNA_M-pyrifera_M_contig6779.16357.1 vs. uniprot
Match: D7G3L4_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3L4_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 2.840e-40
Identity = 96/145 (66.21%), Postives = 106/145 (73.10%), Query Frame = 0 
Query:  148 RQPPRPPF---RGRLPPPVACTLVGFEPGSLGLELEPVVDEEAATXXXXXXXXXXXSGRGRKRPPRRLGCRVFRVTPEGQAARHGSVHPGDALVVLDGVDVLSEPFEAITRALLERQGLRRLIGFMGAAAVAAASGVLPKSEHPS 289
            R P  PP    R R PPPVACTLV FEPGSLGLELE +VD++ A              R   RP RRLGCRVFRVTP+GQAARHGSVHPGDALVVLDGVDVLS+PFE ITRALL+RQG RRLIGFMG AAVAA++    ++  PS
Sbjct:  134 RHPAPPPLDQTRHR-PPPVACTLVAFEPGSLGLELEAIVDDDKARRHGEEY-------RXXXRPRRRLGCRVFRVTPDGQAARHGSVHPGDALVVLDGVDVLSDPFEDITRALLQRQGRRRLIGFMGVAAVAASAPQKRRAPSPS 270
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BLAST of mRNA_M-pyrifera_M_contig6779.16357.1 vs. uniprot
Match: A0A6H5L7S3_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7S3_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 2.890e-36
Identity = 88/114 (77.19%), Postives = 94/114 (82.46%), Query Frame = 0 
Query:  160 PPPVACTLVGFEPGSLGLELEPVVDEEAATXXXXXXXXXXXSGRGRKRPPRRLGCRVFRVTPEGQAARHGSVHPGDALVVLDGVDVLSEPFEAITRALLERQGLRRLIGFMGAA 273
            PPPVACTLV FEPGSLGLELE +VD++       XXXXXXX       P RRLGCRVFRVTP+GQAARHGSVHPGDALVVLDGVDVLS+PFE IT ALL+RQG RRLIGFMGAA
Sbjct:  148 PPPVACTLVAFEPGSLGLELEAIVDDDKGRRHGEXXXXXXX-------PRRRLGCRVFRVTPDGQAARHGSVHPGDALVVLDGVDVLSDPFEDITHALLQRQGRRRLIGFMGAA 254
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6779.16357.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3L4_ECTSI2.840e-4066.21PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L7S3_9PHAE2.890e-3677.19PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.42.10coord: 171..266
e-value: 2.7E-5
score: 26.1
IPR001478PDZ domainPROSITEPS50106PDZcoord: 196..245
score: 8.587
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 164..263

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6779contigM-pyrifera_M_contig6779:6248..9904 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6779.16357.1mRNA_M-pyrifera_M_contig6779.16357.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig6779 2..9904 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig6779.16357.1 ID=prot_M-pyrifera_M_contig6779.16357.1|Name=mRNA_M-pyrifera_M_contig6779.16357.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=516bp
MDSAPPRSPLRDRSNDEFAAKSLIRGFIDQRGGGGGEGGEGGDEFVSPSP
SASSWKDSLGDAPDAPGDTAAMGTAAAASSSRQPFQGPPPSPGACWHGHR
CEVEDVAKGRSTSRRRRIGGGGGGDGGGAATACTTNYATTTNTNTGARQP
PRPPFRGRLPPPVACTLVGFEPGSLGLELEPVVDEEAATARKGGGGGSSN
SGRGRKRPPRRLGCRVFRVTPEGQAARHGSVHPGDALVVLDGVDVLSEPF
EAITRALLERQGLRRLIGFMGAAAVAAASGVLPKSEHPSRRGHSNASLSA
AEGSTTAAADARTYGDANAIDNVDAAAATAAVVEVSRPEGSAAHGRPRRR
RDRVERSRRQEGGSVEERDVFASAGRPSGEGGCRSGDGGGGGGGKGSGCA
ASTAVVEISDARRGAAGRDDRREGARRAGDEISDHRSSSHRSLDRHASSR
SGLSDASATVATLSAVGGRHRAAPSASRRHLQTAAATSGEKASGGPDRVR
RNRRRGAGGEALVQA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
IPR036034PDZ_sf