prot_M-pyrifera_M_contig67782.16356.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig67782.16356.1
Unique Nameprot_M-pyrifera_M_contig67782.16356.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length116
Homology
BLAST of mRNA_M-pyrifera_M_contig67782.16356.1 vs. uniprot
Match: A0A5A8DHV6_CAFRO (DNA-directed RNA polymerase subunit n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DHV6_CAFRO)

HSP 1 Score: 115 bits (287), Expect = 7.130e-31
Identity = 60/116 (51.72%), Postives = 71/116 (61.21%), Query Frame = 0
Query:    1 FCGRCGELLVLPDANPVRCGKCAFETSFEALAASE-APPMRSTARELPEWQRALVRTAMSEEDPSHKAARATVDEPCPKCRHPVLEFYTQQTRSADEGQTVFYECPNCKHKFKENA 115
            FC RCG LL L D++   C  C F   +E L+ +  A    S  RELP WQR+L+  A  +     KAARA VDEPCPKC H  + FYT Q RSADEGQTVF+ECP C H +  NA
Sbjct:    6 FCPRCGTLLDLMDSDSATCSGCKFSCRYEDLSTAVLACETHSKQRELPLWQRSLLAPAGGD----GKAARALVDEPCPKCAHSQMFFYTMQMRSADEGQTVFFECPKCGHNYSVNA 117          
BLAST of mRNA_M-pyrifera_M_contig67782.16356.1 vs. uniprot
Match: A0A836CG05_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG05_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.560e-29
Identity = 59/116 (50.86%), Postives = 67/116 (57.76%), Query Frame = 0
Query:    1 FCGRCGELLVLPDANPVRCGKCAFETSFEALAASEAPPMRSTARELPEWQRALVRTAMSEEDPSHKAARATVDEPCPKCRHPVLEFYTQQTRSADEGQTVFYEC--PNCKHKFKEN 114
            FC  CG +L LP+   V CG C  E +FE+    E    +S  R LP W   L    + E     K  RATVDE CPKC HP +EFYT Q RSADEGQTVFYEC   NC+HKF  N
Sbjct:    5 FCPTCGAVLALPEYGDVECGNCKAEMTFESFGKVELIT-QSAPRPLPRWVEELENKGIRE-----KQKRATVDEQCPKCGHPEMEFYTMQLRSADEGQTVFYECLNKNCQHKFSVN 114          
BLAST of mRNA_M-pyrifera_M_contig67782.16356.1 vs. uniprot
Match: A0A8J2WLY1_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WLY1_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.780e-27
Identity = 49/114 (42.98%), Postives = 64/114 (56.14%), Query Frame = 0
Query:    1 FCGRCGELLVLPDANPVRCGKCAFETSFEALAASEAPPMRSTARELPEWQRALVRTAMSEEDPSHKAARATVDEPCPKCRHPVLEFYTQQTRSADEGQTVFYECPNCKHKFKEN 114
            FCG CG  L +P   P++C  C         +AS+    R+ AR  P W      +  +E+    K+ RATV++ CP C H +LEFYT Q RS DEGQTVFYEC  C H+F +N
Sbjct:   16 FCGHCGSFLEIPAREPLQCSNCGASCLLNESSASDPLETRTKARAAPAWA-----SGRTEQTIKRKSTRATVEQECPNCGHGILEFYTMQMRSVDEGQTVFYECLECGHRFSQN 124          
BLAST of mRNA_M-pyrifera_M_contig67782.16356.1 vs. uniprot
Match: A0A7R9UDQ0_9STRA (DNA-directed RNA polymerase I subunit RPA12 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDQ0_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.040e-26
Identity = 53/114 (46.49%), Postives = 62/114 (54.39%), Query Frame = 0
Query:    1 FCGRCGELLVLPDANPVRCGKCAFETSFEALAASEAPPMRSTARELPEWQRALVRTAMSEEDPSHKAARATVDEPCPKCRHPVLEFYTQQTRSADEGQTVFYECPNCKHKFKEN 114
            FC  CG +L LP    ++CG CA+    E LA S     +S  R  P W        + EE       RA VDE C KC HP   FYT Q RSADEGQTVFYECPNC H++ +N
Sbjct:   52 FCPSCGSMLQLPSEGDLKCGMCAWGCRMEVLARSFKLVTKSPPRAPPAW-------LLQEEQEDVNKRRAKVDEACLKCNHPWTYFYTMQMRSADEGQTVFYECPNCAHRWSQN 158          
BLAST of mRNA_M-pyrifera_M_contig67782.16356.1 vs. uniprot
Match: A0A7S2HHJ5_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HHJ5_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.590e-25
Identity = 50/114 (43.86%), Postives = 61/114 (53.51%), Query Frame = 0
Query:    1 FCGRCGELLVLPDANPVRCGKCAFETSFEALAASEAPPMRSTARELPEWQRALVRTAMSEEDPSHKAARATVDEPCPKCRHPVLEFYTQQTRSADEGQTVFYECPNCKHKFKEN 114
            FC  CG +  LP+ +P+ C  C+FET++  L       + S  R LP W           ED     AR   +E CP+C HP L +YT Q RSADEGQTVFYEC  C HKF  N
Sbjct:   12 FCPECGSIFKLPNVDPISCSYCSFETTYRELQLPTVITV-SAPRPLPSWA-----AEKKNEDAGTGMARMVSEERCPECDHPELMYYTMQLRSADEGQTVFYECSECNHKFSVN 119          
BLAST of mRNA_M-pyrifera_M_contig67782.16356.1 vs. uniprot
Match: A0A830HK12_9CHLO (DNA-directed RNA polymerase I subunit RPA12 n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HK12_9CHLO)

HSP 1 Score: 101 bits (251), Expect = 5.460e-25
Identity = 55/119 (46.22%), Postives = 64/119 (53.78%), Query Frame = 0
Query:    1 FCGRCGELLVLPDA-NPVRCGKCAFETSFEALAASEAPPMRSTARELPEWQRALVRTAMSEE---DPSHKAARATVDEPCPKCRHPVLEFYTQQTRSADEGQTVFYECPNCKHKFKENA 115
            FC  CG LL LPD  +  +C  C FE  +E LA      MRST  +L           +  E   +   +  RATVDE CPKC H  L++YT Q RSADEGQTVFYEC  C HKF  N 
Sbjct:   34 FCDACGSLLALPDTRDEAKCPACPFERKYETLAKQTPFVMRSTPADLLRRHGVEPLVPLDGEAGKETEARRERATVDELCPKCNHRGLDYYTMQLRSADEGQTVFYECKKCAHKFSVNT 152          
BLAST of mRNA_M-pyrifera_M_contig67782.16356.1 vs. uniprot
Match: A0A067CLZ5_SAPPC (DNA-directed RNA polymerase subunit n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CLZ5_SAPPC)

HSP 1 Score: 99.4 bits (246), Expect = 1.450e-24
Identity = 50/115 (43.48%), Postives = 68/115 (59.13%), Query Frame = 0
Query:    1 FCGRCGELLVLPDANPVRCGKCAFETSFEALAASEAPPMRSTARELPEWQRALVRTAMSEEDPSHKAARATVDEPCPKCRHPVLEFYTQQTRSADEGQTVFYECPNCKHKFKENA 115
            FC  CG +L LP+ N + C  C +   ++ L  +      S  R  P+W    V+ A+  ++ +  A RATV+EPCPKC +P +EFYT Q RSADEGQTVFYEC  C H++  N 
Sbjct:   16 FCPHCGTILDLPETNNIVCSSCGYTCQYQDLP-TLCTVTFSEDRPEPKW----VKNAIVSQEVTGPA-RATVEEPCPKCNNPQMEFYTMQLRSADEGQTVFYECKKCGHRYSVNT 124          
BLAST of mRNA_M-pyrifera_M_contig67782.16356.1 vs. uniprot
Match: A0A0N7L402_PLAHL (DNA-directed RNA polymerase subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L402_PLAHL)

HSP 1 Score: 99.4 bits (246), Expect = 1.490e-24
Identity = 54/114 (47.37%), Postives = 67/114 (58.77%), Query Frame = 0
Query:    1 FCGRCGELLVLPDANPVRCGKCAFETSFEALAASEAPPMRSTARELPEWQRALVRTAMSEEDPSHKAARATVDEPCPKCRHPVLEFYTQQTRSADEGQTVFYECPNCKHKFKEN 114
            FC  CG +L  PD N + C  C +   ++ L  S +   +S  R LP+W  A V   MSE       ARATV+E CPKC +P +++YT Q RSADEGQTVFYEC  C HKF  N
Sbjct:   17 FCPHCGTILDHPDTNNIVCSACEYRCRYQDLP-SLSVVTQSEDRPLPKWLDAKV--GMSEVT---GPARATVEETCPKCENPEMDYYTLQLRSADEGQTVFYECKKCGHKFSVN 124          
BLAST of mRNA_M-pyrifera_M_contig67782.16356.1 vs. uniprot
Match: A0A5P1EHX3_ASPOF (DNA-directed RNA polymerase subunit n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EHX3_ASPOF)

HSP 1 Score: 99.0 bits (245), Expect = 2.110e-24
Identity = 53/118 (44.92%), Postives = 65/118 (55.08%), Query Frame = 0
Query:    1 FCGRCGELLVLPDANPVRCGKCAFETSFEALAASE---APPMRSTARELPEWQRALVRTAMSEEDPSHKAARATVDEPCPKCRHPVLEFYTQQTRSADEGQTVFYECPNCKHKFKENA 115
            FCG CG LL    A+  RC  C FE +   +   E   A       REL      ++ T   +ED      RA V+E CP+C+HP LE+YT+Q RSADEGQTVFYECP C HK+  N 
Sbjct:   12 FCGICGTLLSFASADVARCPLCKFERNASEIEGRETRYAITAEDIRRELKLEPFVVLETVEVDED----VQRAVVNEACPQCQHPELEYYTKQLRSADEGQTVFYECPKCGHKYSVNT 125          
BLAST of mRNA_M-pyrifera_M_contig67782.16356.1 vs. uniprot
Match: A0A6I9R0X7_ELAGV (DNA-directed RNA polymerase subunit n=1 Tax=Elaeis guineensis var. tenera TaxID=51953 RepID=A0A6I9R0X7_ELAGV)

HSP 1 Score: 98.6 bits (244), Expect = 2.990e-24
Identity = 52/118 (44.07%), Postives = 65/118 (55.08%), Query Frame = 0
Query:    1 FCGRCGELLVLPDANPVRCGKCAFETSFEALAASEAP---PMRSTARELPEWQRALVRTAMSEEDPSHKAARATVDEPCPKCRHPVLEFYTQQTRSADEGQTVFYECPNCKHKFKENA 115
            FCG CG LL     +  +C  C F+ + E +   E           REL      L+ TA  +E+      RA V+E CP+C HP LE+YT+Q RSADEGQTVFYECP C+HKF  N 
Sbjct:   11 FCGVCGTLLSFDSLDFAKCPLCGFKRAAEEIEGKETHYTITAEDIRRELKIEPFVLLETAPIDEE---MVQRAVVNESCPQCHHPQLEYYTRQLRSADEGQTVFYECPECRHKFSVNT 125          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67782.16356.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DHV6_CAFRO7.130e-3151.72DNA-directed RNA polymerase subunit n=2 Tax=Cafete... [more]
A0A836CG05_9STRA1.560e-2950.86DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A8J2WLY1_9STRA2.780e-2742.98DNA-directed RNA polymerase subunit n=1 Tax=Pelago... [more]
A0A7R9UDQ0_9STRA2.040e-2646.49DNA-directed RNA polymerase I subunit RPA12 n=1 Ta... [more]
A0A7S2HHJ5_9STRA1.590e-2543.86DNA-directed RNA polymerase subunit n=1 Tax=Dictyo... [more]
A0A830HK12_9CHLO5.460e-2546.22DNA-directed RNA polymerase I subunit RPA12 n=1 Ta... [more]
A0A067CLZ5_SAPPC1.450e-2443.48DNA-directed RNA polymerase subunit n=4 Tax=Saprol... [more]
A0A0N7L402_PLAHL1.490e-2447.37DNA-directed RNA polymerase subunit n=1 Tax=Plasmo... [more]
A0A5P1EHX3_ASPOF2.110e-2444.92DNA-directed RNA polymerase subunit n=1 Tax=Aspara... [more]
A0A6I9R0X7_ELAGV2.990e-2444.07DNA-directed RNA polymerase subunit n=1 Tax=Elaeis... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 74..113
e-value: 1.1E-14
score: 64.7
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 75..112
e-value: 1.9E-16
score: 59.6
IPR001222Zinc finger, TFIIS-typePROSITEPS00466ZF_TFIIS_1coord: 76..111
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 72..112
score: 13.594
NoneNo IPR availableGENE3D2.20.25.10coord: 43..113
e-value: 2.0E-19
score: 71.2
NoneNo IPR availablePANTHERPTHR11239:SF14DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA12coord: 1..114
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 1..114
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 66..114
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPIRSFPIRSF005586RNApol_RpoMcoord: 1..115
e-value: 1.2E-22
score: 78.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67782contigM-pyrifera_M_contig67782:783..1130 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67782.16356.1mRNA_M-pyrifera_M_contig67782.16356.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig67782 783..1130 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig67782.16356.1 ID=prot_M-pyrifera_M_contig67782.16356.1|Name=mRNA_M-pyrifera_M_contig67782.16356.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
FCGRCGELLVLPDANPVRCGKCAFETSFEALAASEAPPMRSTARELPEWQ
RALVRTAMSEEDPSHKAARATVDEPCPKCRHPVLEFYTQQTRSADEGQTV
FYECPNCKHKFKENA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001222Znf_TFIIS
IPR012164Rpa12/Rpb9/Rpc10/TFS