mRNA_M-pyrifera_M_contig67782.16356.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67782.16356.1
Unique NamemRNA_M-pyrifera_M_contig67782.16356.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig67782.16356.1 vs. uniprot
Match: A0A5A8DHV6_CAFRO (DNA-directed RNA polymerase subunit n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DHV6_CAFRO)

HSP 1 Score: 115 bits (287), Expect = 7.130e-31
Identity = 60/116 (51.72%), Postives = 71/116 (61.21%), Query Frame = 1 
Query:    1 FCGRCGELLVLPDANPVRCGKCAFETSFEALAASE-APPMRSTARELPEWQRALVRTAMSEEDPSHKAARATVDEPCPKCRHPVLEFYTQQTRSADEGQTVFYECPNCKHKFKENA 345
            FC RCG LL L D++   C  C F   +E L+ +  A    S  RELP WQR+L+  A  +     KAARA VDEPCPKC H  + FYT Q RSADEGQTVF+ECP C H +  NA
Sbjct:    6 FCPRCGTLLDLMDSDSATCSGCKFSCRYEDLSTAVLACETHSKQRELPLWQRSLLAPAGGD----GKAARALVDEPCPKCAHSQMFFYTMQMRSADEGQTVFFECPKCGHNYSVNA 117
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BLAST of mRNA_M-pyrifera_M_contig67782.16356.1 vs. uniprot
Match: A0A836CG05_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG05_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.560e-29
Identity = 59/116 (50.86%), Postives = 67/116 (57.76%), Query Frame = 1 
Query:    1 FCGRCGELLVLPDANPVRCGKCAFETSFEALAASEAPPMRSTARELPEWQRALVRTAMSEEDPSHKAARATVDEPCPKCRHPVLEFYTQQTRSADEGQTVFYEC--PNCKHKFKEN 342
            FC  CG +L LP+   V CG C  E +FE+    E    +S  R LP W   L    + E     K  RATVDE CPKC HP +EFYT Q RSADEGQTVFYEC   NC+HKF  N
Sbjct:    5 FCPTCGAVLALPEYGDVECGNCKAEMTFESFGKVELIT-QSAPRPLPRWVEELENKGIRE-----KQKRATVDEQCPKCGHPEMEFYTMQLRSADEGQTVFYECLNKNCQHKFSVN 114
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BLAST of mRNA_M-pyrifera_M_contig67782.16356.1 vs. uniprot
Match: A0A8J2WLY1_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WLY1_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.780e-27
Identity = 49/114 (42.98%), Postives = 64/114 (56.14%), Query Frame = 1 
Query:    1 FCGRCGELLVLPDANPVRCGKCAFETSFEALAASEAPPMRSTARELPEWQRALVRTAMSEEDPSHKAARATVDEPCPKCRHPVLEFYTQQTRSADEGQTVFYECPNCKHKFKEN 342
            FCG CG  L +P   P++C  C         +AS+    R+ AR  P W      +  +E+    K+ RATV++ CP C H +LEFYT Q RS DEGQTVFYEC  C H+F +N
Sbjct:   16 FCGHCGSFLEIPAREPLQCSNCGASCLLNESSASDPLETRTKARAAPAWA-----SGRTEQTIKRKSTRATVEQECPNCGHGILEFYTMQMRSVDEGQTVFYECLECGHRFSQN 124
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BLAST of mRNA_M-pyrifera_M_contig67782.16356.1 vs. uniprot
Match: A0A7R9UDQ0_9STRA (DNA-directed RNA polymerase I subunit RPA12 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDQ0_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.040e-26
Identity = 53/114 (46.49%), Postives = 62/114 (54.39%), Query Frame = 1 
Query:    1 FCGRCGELLVLPDANPVRCGKCAFETSFEALAASEAPPMRSTARELPEWQRALVRTAMSEEDPSHKAARATVDEPCPKCRHPVLEFYTQQTRSADEGQTVFYECPNCKHKFKEN 342
            FC  CG +L LP    ++CG CA+    E LA S     +S  R  P W        + EE       RA VDE C KC HP   FYT Q RSADEGQTVFYECPNC H++ +N
Sbjct:   52 FCPSCGSMLQLPSEGDLKCGMCAWGCRMEVLARSFKLVTKSPPRAPPAW-------LLQEEQEDVNKRRAKVDEACLKCNHPWTYFYTMQMRSADEGQTVFYECPNCAHRWSQN 158
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BLAST of mRNA_M-pyrifera_M_contig67782.16356.1 vs. uniprot
Match: A0A7S2HHJ5_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HHJ5_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.590e-25
Identity = 50/114 (43.86%), Postives = 61/114 (53.51%), Query Frame = 1 
Query:    1 FCGRCGELLVLPDANPVRCGKCAFETSFEALAASEAPPMRSTARELPEWQRALVRTAMSEEDPSHKAARATVDEPCPKCRHPVLEFYTQQTRSADEGQTVFYECPNCKHKFKEN 342
            FC  CG +  LP+ +P+ C  C+FET++  L       + S  R LP W           ED     AR   +E CP+C HP L +YT Q RSADEGQTVFYEC  C HKF  N
Sbjct:   12 FCPECGSIFKLPNVDPISCSYCSFETTYRELQLPTVITV-SAPRPLPSWA-----AEKKNEDAGTGMARMVSEERCPECDHPELMYYTMQLRSADEGQTVFYECSECNHKFSVN 119
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BLAST of mRNA_M-pyrifera_M_contig67782.16356.1 vs. uniprot
Match: A0A830HK12_9CHLO (DNA-directed RNA polymerase I subunit RPA12 n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HK12_9CHLO)

HSP 1 Score: 101 bits (251), Expect = 5.460e-25
Identity = 55/119 (46.22%), Postives = 64/119 (53.78%), Query Frame = 1 
Query:    1 FCGRCGELLVLPDA-NPVRCGKCAFETSFEALAASEAPPMRSTARELPEWQRALVRTAMSEE---DPSHKAARATVDEPCPKCRHPVLEFYTQQTRSADEGQTVFYECPNCKHKFKENA 345
            FC  CG LL LPD  +  +C  C FE  +E LA      MRST  +L           +  E   +   +  RATVDE CPKC H  L++YT Q RSADEGQTVFYEC  C HKF  N 
Sbjct:   34 FCDACGSLLALPDTRDEAKCPACPFERKYETLAKQTPFVMRSTPADLLRRHGVEPLVPLDGEAGKETEARRERATVDELCPKCNHRGLDYYTMQLRSADEGQTVFYECKKCAHKFSVNT 152
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BLAST of mRNA_M-pyrifera_M_contig67782.16356.1 vs. uniprot
Match: A0A067CLZ5_SAPPC (DNA-directed RNA polymerase subunit n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CLZ5_SAPPC)

HSP 1 Score: 99.4 bits (246), Expect = 1.450e-24
Identity = 50/115 (43.48%), Postives = 68/115 (59.13%), Query Frame = 1 
Query:    1 FCGRCGELLVLPDANPVRCGKCAFETSFEALAASEAPPMRSTARELPEWQRALVRTAMSEEDPSHKAARATVDEPCPKCRHPVLEFYTQQTRSADEGQTVFYECPNCKHKFKENA 345
            FC  CG +L LP+ N + C  C +   ++ L  +      S  R  P+W    V+ A+  ++ +  A RATV+EPCPKC +P +EFYT Q RSADEGQTVFYEC  C H++  N 
Sbjct:   16 FCPHCGTILDLPETNNIVCSSCGYTCQYQDLP-TLCTVTFSEDRPEPKW----VKNAIVSQEVTGPA-RATVEEPCPKCNNPQMEFYTMQLRSADEGQTVFYECKKCGHRYSVNT 124
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BLAST of mRNA_M-pyrifera_M_contig67782.16356.1 vs. uniprot
Match: A0A0N7L402_PLAHL (DNA-directed RNA polymerase subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L402_PLAHL)

HSP 1 Score: 99.4 bits (246), Expect = 1.490e-24
Identity = 54/114 (47.37%), Postives = 67/114 (58.77%), Query Frame = 1 
Query:    1 FCGRCGELLVLPDANPVRCGKCAFETSFEALAASEAPPMRSTARELPEWQRALVRTAMSEEDPSHKAARATVDEPCPKCRHPVLEFYTQQTRSADEGQTVFYECPNCKHKFKEN 342
            FC  CG +L  PD N + C  C +   ++ L  S +   +S  R LP+W  A V   MSE       ARATV+E CPKC +P +++YT Q RSADEGQTVFYEC  C HKF  N
Sbjct:   17 FCPHCGTILDHPDTNNIVCSACEYRCRYQDLP-SLSVVTQSEDRPLPKWLDAKV--GMSEVT---GPARATVEETCPKCENPEMDYYTLQLRSADEGQTVFYECKKCGHKFSVN 124
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BLAST of mRNA_M-pyrifera_M_contig67782.16356.1 vs. uniprot
Match: A0A5P1EHX3_ASPOF (DNA-directed RNA polymerase subunit n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EHX3_ASPOF)

HSP 1 Score: 99.0 bits (245), Expect = 2.110e-24
Identity = 53/118 (44.92%), Postives = 65/118 (55.08%), Query Frame = 1 
Query:    1 FCGRCGELLVLPDANPVRCGKCAFETSFEALAASE---APPMRSTARELPEWQRALVRTAMSEEDPSHKAARATVDEPCPKCRHPVLEFYTQQTRSADEGQTVFYECPNCKHKFKENA 345
            FCG CG LL    A+  RC  C FE +   +   E   A       REL      ++ T   +ED      RA V+E CP+C+HP LE+YT+Q RSADEGQTVFYECP C HK+  N 
Sbjct:   12 FCGICGTLLSFASADVARCPLCKFERNASEIEGRETRYAITAEDIRRELKLEPFVVLETVEVDED----VQRAVVNEACPQCQHPELEYYTKQLRSADEGQTVFYECPKCGHKYSVNT 125
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BLAST of mRNA_M-pyrifera_M_contig67782.16356.1 vs. uniprot
Match: A0A6I9R0X7_ELAGV (DNA-directed RNA polymerase subunit n=1 Tax=Elaeis guineensis var. tenera TaxID=51953 RepID=A0A6I9R0X7_ELAGV)

HSP 1 Score: 98.6 bits (244), Expect = 2.990e-24
Identity = 52/118 (44.07%), Postives = 65/118 (55.08%), Query Frame = 1 
Query:    1 FCGRCGELLVLPDANPVRCGKCAFETSFEALAASEAP---PMRSTARELPEWQRALVRTAMSEEDPSHKAARATVDEPCPKCRHPVLEFYTQQTRSADEGQTVFYECPNCKHKFKENA 345
            FCG CG LL     +  +C  C F+ + E +   E           REL      L+ TA  +E+      RA V+E CP+C HP LE+YT+Q RSADEGQTVFYECP C+HKF  N 
Sbjct:   11 FCGVCGTLLSFDSLDFAKCPLCGFKRAAEEIEGKETHYTITAEDIRRELKIEPFVLLETAPIDEE---MVQRAVVNESCPQCHHPQLEYYTRQLRSADEGQTVFYECPECRHKFSVNT 125
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67782.16356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DHV6_CAFRO7.130e-3151.72DNA-directed RNA polymerase subunit n=2 Tax=Cafete... [more]
A0A836CG05_9STRA1.560e-2950.86DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A8J2WLY1_9STRA2.780e-2742.98DNA-directed RNA polymerase subunit n=1 Tax=Pelago... [more]
A0A7R9UDQ0_9STRA2.040e-2646.49DNA-directed RNA polymerase I subunit RPA12 n=1 Ta... [more]
A0A7S2HHJ5_9STRA1.590e-2543.86DNA-directed RNA polymerase subunit n=1 Tax=Dictyo... [more]
A0A830HK12_9CHLO5.460e-2546.22DNA-directed RNA polymerase I subunit RPA12 n=1 Ta... [more]
A0A067CLZ5_SAPPC1.450e-2443.48DNA-directed RNA polymerase subunit n=4 Tax=Saprol... [more]
A0A0N7L402_PLAHL1.490e-2447.37DNA-directed RNA polymerase subunit n=1 Tax=Plasmo... [more]
A0A5P1EHX3_ASPOF2.110e-2444.92DNA-directed RNA polymerase subunit n=1 Tax=Aspara... [more]
A0A6I9R0X7_ELAGV2.990e-2444.07DNA-directed RNA polymerase subunit n=1 Tax=Elaeis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67782contigM-pyrifera_M_contig67782:783..1130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.9
Seed ortholog evalue4.1e-19
Seed eggNOG ortholog112098.XP_008609236.1
Preferred nameZNRD1
KEGG rclassRC02795
KEGG koko:K03000
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00182
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000428,GO:0001085,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005736,GO:0006139,GO:0006351,GO:0006352,GO:0006353,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006363,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009303,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016070,GO:0016072,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030880,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040029,GO:0042790,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045815,GO:0045892,GO:0045934,GO:0046483,GO:0048518,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0055029,GO:0060255,GO:0061629,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen
EggNOG OGsCOG1594@1,KOG2907@2759
Ec32 ortholog descriptionDNA-directed RNA polymerase, subunit C11/M/9
Ec32 orthologEc-24_002610.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03021
Exons1
Model size348
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816568.3490872-CDS-M-pyrifera_M_contig67782:782..11301622816568.3490872-CDS-M-pyrifera_M_contig67782:782..1130Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67782 783..1130 +
1692278051.6132863-CDS-M-pyrifera_M_contig67782:782..11301692278051.6132863-CDS-M-pyrifera_M_contig67782:782..1130Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67782 783..1130 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67782.16356.1prot_M-pyrifera_M_contig67782.16356.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67782 783..1130 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67782.16356.1

>prot_M-pyrifera_M_contig67782.16356.1 ID=prot_M-pyrifera_M_contig67782.16356.1|Name=mRNA_M-pyrifera_M_contig67782.16356.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
FCGRCGELLVLPDANPVRCGKCAFETSFEALAASEAPPMRSTARELPEWQ
RALVRTAMSEEDPSHKAARATVDEPCPKCRHPVLEFYTQQTRSADEGQTV
FYECPNCKHKFKENA*
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mRNA from alignment at M-pyrifera_M_contig67782:783..1130+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67782.16356.1 ID=mRNA_M-pyrifera_M_contig67782.16356.1|Name=mRNA_M-pyrifera_M_contig67782.16356.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig67782:783..1130+ (Macrocystis pyrifera P11B4 male)
TTCTGCGGGCGGTGTGGGGAGTTGCTGGTTCTGCCCGACGCAAACCCTGT
GCGTTGCGGGAAGTGTGCGTTTGAGACGTCGTTTGAGGCTCTGGCGGCCT
CCGAGGCCCCCCCTATGCGCTCCACGGCCAGGGAGTTGCCAGAGTGGCAG
CGTGCGCTCGTGCGAACGGCGATGAGCGAGGAAGACCCCTCGCACAAGGC
TGCTAGGGCCACCGTAGACGAACCCTGCCCCAAATGCAGACACCCAGTCC
TCGAATTCTATACCCAACAGACTCGCTCTGCCGATGAAGGGCAGACTGTG
TTCTACGAGTGCCCAAATTGCAAGCACAAGTTCAAAGAAAACGCATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67782:783..1130+

>mRNA_M-pyrifera_M_contig67782.16356.1 ID=mRNA_M-pyrifera_M_contig67782.16356.1|Name=mRNA_M-pyrifera_M_contig67782.16356.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig67782:783..1130+ (Macrocystis pyrifera P11B4 male)
TTCTGCGGGCGGTGTGGGGAGTTGCTGGTTCTGCCCGACGCAAACCCTGT
GCGTTGCGGGAAGTGTGCGTTTGAGACGTCGTTTGAGGCTCTGGCGGCCT
CCGAGGCCCCCCCTATGCGCTCCACGGCCAGGGAGTTGCCAGAGTGGCAG
CGTGCGCTCGTGCGAACGGCGATGAGCGAGGAAGACCCCTCGCACAAGGC
TGCTAGGGCCACCGTAGACGAACCCTGCCCCAAATGCAGACACCCAGTCC
TCGAATTCTATACCCAACAGACTCGCTCTGCCGATGAAGGGCAGACTGTG
TTCTACGAGTGCCCAAATTGCAAGCACAAGTTCAAAGAAAACGCATAATT
CTGCGGGCGGTGTGGGGAGTTGCTGGTTCTGCCCGACGCAAACCCTGTGC
GTTGCGGGAAGTGTGCGTTTGAGACGTCGTTTGAGGCTCTGGCGGCCTCC
GAGGCCCCCCCTATGCGCTCCACGGCCAGGGAGTTGCCAGAGTGGCAGCG
TGCGCTCGTGCGAACGGCGATGAGCGAGGAAGACCCCTCGCACAAGGCTG
CTAGGGCCACCGTAGACGAACCCTGCCCCAAATGCAGACACCCAGTCCTC
GAATTCTATACCCAACAGACTCGCTCTGCCGATGAAGGGCAGACTGTGTT
CTACGAGTGCCCAAATTGCAAGCACAAGTTCAAAGAAAACGCATAA
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