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Homology
BLAST of mRNA_M-pyrifera_M_contig6778.16354.1 vs. uniprot
Match: D7G0M4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M4_ECTSI) HSP 1 Score: 103 bits (257), Expect = 3.690e-19 Identity = 60/93 (64.52%), Postives = 69/93 (74.19%), Query Frame = 0
Query: 1 RVRGTDNPHSRRFVQKVKGL-ARGDWRGVLRELDAAEIAAAASAAVGPAMSIAAPTAPAQPMTVYMYTACVTSLSKSGRWREALETLDRMTAA 92
R RGTDNPHSR FV+KVK + + GDW+ VLRELDAAE AAA+A AA A+PMTVYMYTAC+T++SK RWREALE LDRM AA
Sbjct: 37 RRRGTDNPHSRLFVKKVKAMESSGDWKAVLRELDAAEGRAAATAXXXX-XXXAAVAPRAEPMTVYMYTACITTMSKCKRWREALEVLDRMMAA 128
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 545..679
e-value: 2.3E-33
score: 117.9
coord: 307..398
e-value: 1.1E-20
score: 76.2
coord: 59..236
e-value: 1.3E-42
score: 148.3
coord: 237..306
e-value: 8.5E-18
score: 66.8
coord: 431..544
e-value: 5.9E-27
score: 96.8 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13041 | PPR_2 | coord: 439..486
e-value: 2.9E-7
score: 30.6
coord: 620..666
e-value: 4.1E-7
score: 30.1 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF01535 | PPR | coord: 138..165
e-value: 0.29
score: 11.5
coord: 244..270
e-value: 0.027
score: 14.7
coord: 105..128
e-value: 0.097
score: 13.0
coord: 549..579
e-value: 0.056
score: 13.7
coord: 171..196
e-value: 0.05
score: 13.9
coord: 207..231
e-value: 0.0034
score: 17.5
coord: 584..613
e-value: 1.4E-5
score: 25.0
coord: 64..94
e-value: 3.8E-4
score: 20.5
coord: 352..377
e-value: 3.0E-4
score: 20.8
coord: 514..535
e-value: 0.018
score: 15.3
coord: 280..303
e-value: 1.9E-5
score: 24.6
coord: 317..347
e-value: 2.7E-4
score: 21.0 |
| IPR002885 | Pentatricopeptide repeat | TIGRFAM | TIGR00756 | TIGR00756 | coord: 352..378
e-value: 4.3E-4
score: 18.3
coord: 584..613
e-value: 2.5E-5
score: 22.2
coord: 442..476
e-value: 1.2E-5
score: 23.2
coord: 623..657
e-value: 6.8E-8
score: 30.2
coord: 280..303
e-value: 4.8E-5
score: 21.3
coord: 317..351
e-value: 1.9E-5
score: 22.5
coord: 244..277
e-value: 7.3E-4
score: 17.5
coord: 171..197
e-value: 0.0032
score: 15.5
coord: 207..231
e-value: 0.0013
score: 16.8
coord: 137..168
e-value: 9.7E-5
score: 20.3
coord: 64..97
e-value: 5.9E-6
score: 24.1 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 350..384
score: 10.534 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 204..234
score: 8.802 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 547..581
score: 9.953 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 440..474
score: 10.797 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 168..198
score: 8.473 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 133..167
score: 9.942 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 315..349
score: 11.181 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 242..276
score: 10.687 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 277..314
score: 9.778 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 511..545
score: 8.144 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 582..616
score: 9.558 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 475..505
score: 7.563 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 656..679
score: 5.404 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 621..655
score: 12.255 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 62..96
score: 10.95 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 97..131
score: 7.772 |
| None | No IPR available | PANTHER | PTHR46128 | FAMILY NOT NAMED | coord: 514..676
coord: 241..379
coord: 62..231
coord: 436..536 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_M-pyrifera_M_contig6778.16354.1 ID=prot_M-pyrifera_M_contig6778.16354.1|Name=mRNA_M-pyrifera_M_contig6778.16354.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=679bp
RVRGTDNPHSRRFVQKVKGLARGDWRGVLRELDAAEIAAAASAAVGPAMS
IAAPTAPAQPMTVYMYTACVTSLSKSGRWREALETLDRMTAAGITPTSHA
ISATITACGKAGQAQAGLDLLERMRSSGALEPDLYCLSAAIDAAGREGRW
EAALALLGDLRKAGIKPDKFVYRAAITACGNGRQLEEALQLLRDMRADPD
VDADAPSYNAAITACGRCERWDLALTLLREMSPSASGAPAPDIISYGAAM
AACASCDRWEEATGLLREMPATGLAPDSTMYTSAISACGRAGRWKEALSL
FREVGVAERSGFPPNPVVFSAAIMACGDGGQWEKALELLREMPGAGVTPD
VVCYNSAMTACAKSGKSNEALALLRDMASTPTSPPAEAVARGGVGAGEGA
GAGEQAVGARTEGVGIRAREVGVGVGVGAGAGAGAGCRPNVVTFNAAIKA
CGAAGQWEQALNLLRGMLTVRVVPNATSYASAIAACGEAGRWEQAVRLLE
TVRCIHGVELGAGSFNAAIKACGKAGRLDDALNVLRGAAVAGAEAPDIST
YTAAIVAAGACGNPGKAVALLREMPTAGVTPSAISYNAAIDACGKGFQWE
EALSLLREMGKSGGDGGLGPDLISYNSAISAMGVAGEWERALNLLEEMSE
AGVEPDAVSLASAVRACELGGRGEEAEAL back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011990 | TPR-like_helical_dom_sf |
| IPR002885 | Pentatricopeptide_repeat |
|