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Homology
BLAST of mRNA_M-pyrifera_M_contig6778.16353.1 vs. uniprot
Match: D7G0M5_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M5_ECTSI) HSP 1 Score: 125 bits (313), Expect = 1.130e-25 Identity = 74/127 (58.27%), Postives = 83/127 (65.35%), Query Frame = 0
Query: 1 RGRGXXXXXDRGSAAA---RSKQLSATARALLRSKIALSKIREVPAQDWRAVLAALDAAEIAEARARHPRGATSDKAGVSTFVYNMCISRLAKCFRWGEALDILARMAALGVEPNRYCVNAALDACG 124
R +G RGSAA + LS RA R+K+AL KI V DWR +L LD AE+AE RA A + A VSTFVY+ CISR+AKCFRWGEALDILARMA LG PN YCVNAALDACG
Sbjct: 45 REKGSSSFSQRGSAAGGPRTGRALSRDGRASFRTKLALDKIDAVRKDDWRRILVELDKAELAEGRAT-TNNAKAPAAAVSTFVYSKCISRMAKCFRWGEALDILARMAELGAMPNSYCVNAALDACG 170
BLAST of mRNA_M-pyrifera_M_contig6778.16353.1 vs. uniprot
Match: A0A6H5J6J5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J6J5_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 4.600e-9 Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 0
Query: 29 LRSKIALSKIREVPAQDWRAVLAALDAAEIAEARARHPRGATSDKAGVSTFVYNMCISRLAKCFRWGEALDILARMAALGVEPNRYCVNAA 119
L SK + K++ + DWR VL L AE A A ++ ++TF+Y CISR+AK RW EALDIL RM A G++PN YCV++A
Sbjct: 40 LHSKNFVQKVQCMRPTDWRGVLRELQIAEEAS-------DAQPSESRITTFMYASCISRMAKARRWEEALDILQRMRARGLQPNSYCVSSA 123
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13812 | PPR_3 | coord: 346..405
e-value: 4.7E-9
score: 36.2
coord: 488..548
e-value: 1.3E-6
score: 28.4 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13041 | PPR_2 | coord: 430..476
e-value: 2.6E-9
score: 37.1
coord: 744..792
e-value: 9.0E-8
score: 32.2
coord: 252..300
e-value: 1.6E-9
score: 37.8 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF01535 | PPR | coord: 713..742
e-value: 0.0069
score: 16.6
coord: 80..109
e-value: 0.2
score: 12.0 |
| IPR002885 | Pentatricopeptide repeat | TIGRFAM | TIGR00756 | TIGR00756 | coord: 432..466
e-value: 1.2E-5
score: 23.1
coord: 290..324
e-value: 3.7E-8
score: 31.1
coord: 184..217
e-value: 5.7E-5
score: 21.0
coord: 607..640
e-value: 1.9E-4
score: 19.4
coord: 256..289
e-value: 1.7E-5
score: 22.7
coord: 537..571
e-value: 1.7E-5
score: 22.6
coord: 502..535
e-value: 3.0E-6
score: 25.1
coord: 642..675
e-value: 3.9E-6
score: 24.7
coord: 80..112
e-value: 2.3E-4
score: 19.1
coord: 467..501
e-value: 0.0014
score: 16.7
coord: 678..710
e-value: 0.0011
score: 17.0
coord: 149..183
e-value: 3.0E-6
score: 25.0
coord: 360..388
e-value: 3.3E-6
score: 24.9
coord: 572..606
e-value: 7.2E-7
score: 27.0
coord: 115..148
e-value: 1.4E-4
score: 19.8
coord: 748..781
e-value: 7.6E-8
score: 30.1
coord: 325..358
e-value: 5.7E-6
score: 24.2 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 288..322
score: 11.575 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 430..464
score: 11.301 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 640..674
score: 11.345 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 605..639
score: 10.698 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 745..779
score: 12.299 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 112..146
score: 9.624 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 77..111
score: 9.788 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 358..392
score: 10.808 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 217..251
score: 9.032 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 570..604
score: 12.145 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 182..216
score: 11.323 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 710..744
score: 9.471 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 500..534
score: 12.211 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 323..357
score: 11.433 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 252..282
score: 9.471 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 147..181
score: 11.531 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 780..814
score: 6.303 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 675..709
score: 10.117 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 465..499
score: 9.975 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 535..569
score: 10.501 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 394..424
score: 7.125 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 710..813
e-value: 9.3E-24
score: 85.7 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 209..282
e-value: 2.5E-13
score: 51.9 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 410..527
e-value: 4.7E-33
score: 117.0
coord: 16..208
e-value: 2.3E-34
score: 121.4
coord: 283..389
e-value: 2.2E-33
score: 118.1 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 542..704
e-value: 4.3E-51
score: 176.1 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | SUPERFAMILY | 48452 | TPR-like | coord: 215..385 |
| IPR033443 | Pentacotripeptide-repeat region of PRORP | PFAM | PF17177 | PPR_long | coord: 583..702
e-value: 1.4E-10
score: 40.9
coord: 118..238
e-value: 7.6E-11
score: 41.8 |
| None | No IPR available | PANTHER | PTHR46128 | FAMILY NOT NAMED | coord: 623..809
coord: 252..422
coord: 78..245
coord: 412..632 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_M-pyrifera_M_contig6778.16353.1 ID=prot_M-pyrifera_M_contig6778.16353.1|Name=mRNA_M-pyrifera_M_contig6778.16353.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=815bp
RGRGRGGGGDRGSAAARSKQLSATARALLRSKIALSKIREVPAQDWRAVL
AALDAAEIAEARARHPRGATSDKAGVSTFVYNMCISRLAKCFRWGEALDI
LARMAALGVEPNRYCVNAALDACGKAGRSKEAIELMRDARKSGIPLDVVS
YNAAIPACASGGEWETAMSLLKGMSELGVEPNEVTYLAAIKVCGGCGKSD
EALALLREMEGKGIAPNPATYSAVANACRAAGRWQDAVSMVKETRDWGAP
ANVYNYNLAICTCADCGRWEEALDLLRYMRETAGVEPDVITHNIVIAACG
KAGEGERAVSILREMSAAGLSPDVISFSAAISACRKSRQWEKAVGLLREM
ADAGIRPNSISYNAAMSACTEANKWEQALELFDEMKTVGGVTPASGSFNA
AISACEKGLQWERAVELLREMSSTPGVEANVISYNTAIAACGSSGKGDEA
VALMREMPTVGLTPDVISYNSAITALGNSLQWGAAVTLLREMPAAGVAPN
AITYSAAISALANGGKWEEALALLREMPGAGVDPSAVCYSPAIRACGQAG
EADQAVTLLREMEGAGVAPNTFSYAAAISACGKSGQWEEGLALLKEMPGQ
GLPPNEFCYNAAITGCGIGGQWEQALALLKAMPGEGVTPTVVTYTAAIAA
LGNCGEVEQALELMGKMSEEGLAPTELTYSAAIMACGNGGQGDRILELLR
EMVEGGITPTMPSYLSAIRSCGECGQGKEAVELLWEMQAVGIAPTVSSYN
AAITACGKSGLWEEALALLKEMPAAGVAPDSGSLSAAISACHKAGRGVRA
AELVEEIMSLSQASG back to top
Annotated Terms
The following terms have been associated with this polypeptide:
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