mRNA_M-pyrifera_M_contig67625.16326.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67625.16326.1
Unique NamemRNA_M-pyrifera_M_contig67625.16326.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67625.16326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67625contigM-pyrifera_M_contig67625:226..1083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size858
Cds size858
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816566.9940467-CDS-M-pyrifera_M_contig67625:225..10831622816566.9940467-CDS-M-pyrifera_M_contig67625:225..1083Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67625 226..1083 +
1692278050.9187534-CDS-M-pyrifera_M_contig67625:225..10831692278050.9187534-CDS-M-pyrifera_M_contig67625:225..1083Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67625 226..1083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67625.16326.1prot_M-pyrifera_M_contig67625.16326.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67625 226..1083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67625.16326.1

>prot_M-pyrifera_M_contig67625.16326.1 ID=prot_M-pyrifera_M_contig67625.16326.1|Name=mRNA_M-pyrifera_M_contig67625.16326.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=286bp
ATTIFRNNTAGFTGGAMRVTNGSSAFWSGNTRFIENSGLSGGAMMISGGS
TASSSGNTTFSANTAGKWGGAVFVSVYSNMILSGETTFSSNVATQGGAVS
VFDNAIVEMSGETKLSRNLAEDGGAMFVQPNSNLSMGEITTFHQNMAVGV
SLSAIPRSGGGALGVVESTVTLSGNTTFSVNTAEALGGAVYGSDYSNIAW
DGETTFSSNVAGQGGAAYAQHRSHLSLDGRTTFHGNLALGTNRSDITPAG
GALTMVDSAVTFGGETMFAENQALGSGGAVFVDSTT
back to top

mRNA from alignment at M-pyrifera_M_contig67625:226..1083+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67625.16326.1 ID=mRNA_M-pyrifera_M_contig67625.16326.1|Name=mRNA_M-pyrifera_M_contig67625.16326.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig67625:226..1083+ (Macrocystis pyrifera P11B4 male)
GCGACCACAATATTCAGGAACAACACAGCCGGCTTCACCGGGGGCGCCAT
GCGGGTGACCAATGGCTCCAGTGCTTTTTGGAGTGGGAACACGAGATTTA
TAGAAAACAGTGGCTTGAGTGGAGGTGCGATGATGATAAGCGGCGGATCC
ACTGCCTCCTCGAGTGGGAACACAACATTTTCCGCTAACACCGCCGGAAA
ATGGGGGGGCGCTGTGTTTGTTTCCGTGTACTCCAATATGATCTTGAGCG
GTGAGACGACGTTTTCAAGCAACGTGGCAACACAGGGAGGCGCTGTGTCG
GTTTTCGACAACGCGATCGTTGAAATGAGTGGAGAGACAAAGCTCTCAAG
AAATTTAGCAGAGGACGGGGGTGCCATGTTTGTGCAACCGAACTCGAACC
TCTCCATGGGCGAGATTACCACCTTCCACCAGAACATGGCCGTGGGTGTG
AGTTTATCCGCTATTCCACGATCAGGTGGTGGTGCCCTTGGAGTGGTTGA
GTCCACTGTTACGTTGAGCGGTAATACAACATTCTCTGTCAACACCGCCG
AAGCCCTAGGAGGTGCTGTGTATGGCTCCGACTACTCAAACATTGCGTGG
GACGGGGAGACGACGTTTTCAAGCAACGTGGCCGGACAAGGGGGTGCTGC
TTATGCACAACATCGCTCACACCTCTCCTTAGACGGGAGAACCACCTTTC
ACGGGAATCTTGCCTTGGGTACGAACAGATCCGATATCACACCGGCAGGT
GGTGCCCTTACCATGGTGGATTCCGCTGTTACGTTCGGCGGGGAGACCAT
GTTTGCCGAGAACCAAGCCCTGGGGTCTGGTGGTGCTGTTTTCGTGGATA
GCACTACC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig67625:226..1083+

>mRNA_M-pyrifera_M_contig67625.16326.1 ID=mRNA_M-pyrifera_M_contig67625.16326.1|Name=mRNA_M-pyrifera_M_contig67625.16326.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1716bp|location=Sequence derived from alignment at M-pyrifera_M_contig67625:226..1083+ (Macrocystis pyrifera P11B4 male)
GCGACCACAATATTCAGGAACAACACAGCCGGCTTCACCGGGGGCGCCAT
GCGGGTGACCAATGGCTCCAGTGCTTTTTGGAGTGGGAACACGAGATTTA
TAGAAAACAGTGGCTTGAGTGGAGGTGCGATGATGATAAGCGGCGGATCC
ACTGCCTCCTCGAGTGGGAACACAACATTTTCCGCTAACACCGCCGGAAA
ATGGGGGGGCGCTGTGTTTGTTTCCGTGTACTCCAATATGATCTTGAGCG
GTGAGACGACGTTTTCAAGCAACGTGGCAACACAGGGAGGCGCTGTGTCG
GTTTTCGACAACGCGATCGTTGAAATGAGTGGAGAGACAAAGCTCTCAAG
AAATTTAGCAGAGGACGGGGGTGCCATGTTTGTGCAACCGAACTCGAACC
TCTCCATGGGCGAGATTACCACCTTCCACCAGAACATGGCCGTGGGTGTG
AGTTTATCCGCTATTCCACGATCAGGTGGTGGTGCCCTTGGAGTGGTTGA
GTCCACTGTTACGTTGAGCGGTAATACAACATTCTCTGTCAACACCGCCG
AAGCCCTAGGAGGTGCTGTGTATGGCTCCGACTACTCAAACATTGCGTGG
GACGGGGAGACGACGTTTTCAAGCAACGTGGCCGGACAAGGGGGTGCTGC
TTATGCACAACATCGCTCACACCTCTCCTTAGACGGGAGAACCACCTTTC
ACGGGAATCTTGCCTTGGGTACGAACAGATCCGATATCACACCGGCAGGT
GGTGCCCTTACCATGGTGGATTCCGCTGTTACGTTCGGCGGGGAGACCAT
GTTTGCCGAGAACCAAGCCCTGGGGTCTGGTGGTGCTGTTTTCGTGGATA
GCACTACCGCGACCACAATATTCAGGAACAACACAGCCGGCTTCACCGGG
GGCGCCATGCGGGTGACCAATGGCTCCAGTGCTTTTTGGAGTGGGAACAC
GAGATTTATAGAAAACAGTGGCTTGAGTGGAGGTGCGATGATGATAAGCG
GCGGATCCACTGCCTCCTCGAGTGGGAACACAACATTTTCCGCTAACACC
GCCGGAAAATGGGGGGGCGCTGTGTTTGTTTCCGTGTACTCCAATATGAT
CTTGAGCGGTGAGACGACGTTTTCAAGCAACGTGGCAACACAGGGAGGCG
CTGTGTCGGTTTTCGACAACGCGATCGTTGAAATGAGTGGAGAGACAAAG
CTCTCAAGAAATTTAGCAGAGGACGGGGGTGCCATGTTTGTGCAACCGAA
CTCGAACCTCTCCATGGGCGAGATTACCACCTTCCACCAGAACATGGCCG
TGGGTGTGAGTTTATCCGCTATTCCACGATCAGGTGGTGGTGCCCTTGGA
GTGGTTGAGTCCACTGTTACGTTGAGCGGTAATACAACATTCTCTGTCAA
CACCGCCGAAGCCCTAGGAGGTGCTGTGTATGGCTCCGACTACTCAAACA
TTGCGTGGGACGGGGAGACGACGTTTTCAAGCAACGTGGCCGGACAAGGG
GGTGCTGCTTATGCACAACATCGCTCACACCTCTCCTTAGACGGGAGAAC
CACCTTTCACGGGAATCTTGCCTTGGGTACGAACAGATCCGATATCACAC
CGGCAGGTGGTGCCCTTACCATGGTGGATTCCGCTGTTACGTTCGGCGGG
GAGACCATGTTTGCCGAGAACCAAGCCCTGGGGTCTGGTGGTGCTGTTTT
CGTGGATAGCACTACC
back to top