mRNA_M-pyrifera_M_contig67623.16325.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67623.16325.1
Unique NamemRNA_M-pyrifera_M_contig67623.16325.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig67623.16325.1 vs. uniprot
Match: A0A1W5C969_ANOGA (AGAP011410-PA (Fragment) n=1 Tax=Anopheles gambiae TaxID=7165 RepID=A0A1W5C969_ANOGA)

HSP 1 Score: 82.8 bits (203), Expect = 5.450e-15
Identity = 46/139 (33.09%), Postives = 63/139 (45.32%), Query Frame = 1
Query:    7 CNLCGRQVSVLSWPVHLGDYHRSVSLCCGVCGKSFKSSRGLRDHIRGS-HQGIRPHVCSRCGKSYVYRSDLVVHERTHTGVMYRCDSCGKSYKTPAGLRFHRSSVHLGIRPHVCSRCGKSYVYRSDLVVHERTHAGVMY 420
            C +C +Q   LS        H  V   C +C KS++    L  H  G+ H   RP+ C  C K +  +     HE  H+G M+ C  C KSY+    LR H   VH   RP+ CS C K +        H+ TH+GV +
Sbjct:    1 CAMCPKQFKSLSARRTHELTHVGVVFPCSLCDKSYQYKSLLNAHHHGTVHSSSRPYACGICSKRFKSQFARSTHELAHSGNMFPCSVCDKSYRYNRDLR-HHGRVHSENRPYACSLCPKQFKSSFARNTHQHTHSGVRF 138          
BLAST of mRNA_M-pyrifera_M_contig67623.16325.1 vs. uniprot
Match: A0A6I8TAC9_AEDAE (Uncharacterized protein n=5 Tax=Aedes aegypti TaxID=7159 RepID=A0A6I8TAC9_AEDAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.140e-13
Identity = 42/122 (34.43%), Postives = 59/122 (48.36%), Query Frame = 1
Query:   79 SLCCGVCGKSFKSSRGLRDHIRGSHQGIRPHVCSRCGKSYVYRSDLVVHERTHT-------------GVMYRCDSCGKSYKTPAGLRFHRSSVHLGIRPHVCSRCGKSYVYRSDLVVHERTH 405
            S  C +C ++F+S   L  H    H G + H CS+CGK +V+RS +  H  TH               + ++CD C  SYK    LRFH    H G + H C  CG  + +RS L+ H + H
Sbjct:  554 SFKCDICQRTFRSRLHLVQHKTQRH-GAKKHACSKCGKGFVFRSQMQKHLATHKHRKERKAGKSITRDLPFKCDICHNSYKHVRSLRFHLKYSH-GTKRHECHICGLKFFWRSRLLRHMKCH 673          
BLAST of mRNA_M-pyrifera_M_contig67623.16325.1 vs. uniprot
Match: A0A401T2T2_CHIPU (Uncharacterized protein (Fragment) n=4 Tax=Orectolobiformes TaxID=30503 RepID=A0A401T2T2_CHIPU)

HSP 1 Score: 78.6 bits (192), Expect = 1.560e-13
Identity = 41/106 (38.68%), Postives = 56/106 (52.83%), Query Frame = 1
Query:   88 CGVCGKSFKSSRGLRDHIRGSHQGIRPHVCSRCGKSYVYRSDLVVHER----THTGVMYRCDSCGKSYKTPAGLRFHRSSVHLGIRPHVCSRCGKSYVYRSDLVVH 393
            C  C K F S   L+ H R  H G +P  C++CGK Y  + +L+ HE     T TGV+Y C  C K++K    LR H  S H G  P  CS C + ++ + DL +H
Sbjct:  345 CPTCHKKFLSKYYLKVHNR-KHTGEKPFKCTKCGKCYFRKENLLKHEARNCVTRTGVVYTCHECSKTFKGRTELRNHLVS-HTGEMPFKCSSCPQQFMQKKDLQIH 448          
BLAST of mRNA_M-pyrifera_M_contig67623.16325.1 vs. uniprot
Match: UPI00143D0027 (zinc finger protein 271-like n=1 Tax=Belonocnema kinseyi TaxID=2817044 RepID=UPI00143D0027)

HSP 1 Score: 78.2 bits (191), Expect = 2.160e-13
Identity = 39/122 (31.97%), Postives = 60/122 (49.18%), Query Frame = 1
Query:   88 CGVCGKSFKSSRGLRDHIRGSHQGIRPHVCSRCGKSYVYRSDLVVHERTHTGVMYRCDSCGKSYKTPAGLRFHRSSVHLGIRP--------------HVCSRCGKSYVYRSDLVVHERTHAG 411
            C  C +SF+ +  LR+H++  H+GI+PHVC  CGKS+   S++ VH   H G  ++C  C + ++    L  H    H G+ P              +VC  CG++      L+ HE  H G
Sbjct:  551 CNACDRSFRDAVRLREHVKSIHEGIKPHVCDMCGKSFHRLSNMKVHRALHLG--HKCTHCEQVFEKVRQLVSHIQDDH-GLEPPASLLAKKGYVSGTYVCRFCGRTLATYQSLLDHEHIHTG 669          
BLAST of mRNA_M-pyrifera_M_contig67623.16325.1 vs. uniprot
Match: UPI00063ED506 (zinc finger protein 85 isoform X1 n=2 Tax=Monomorium pharaonis TaxID=307658 RepID=UPI00063ED506)

HSP 1 Score: 77.8 bits (190), Expect = 2.970e-13
Identity = 34/80 (42.50%), Postives = 47/80 (58.75%), Query Frame = 1
Query:  175 CSRCGKSYVYRSDLVVHERTH-TGVMYRCDSCGKSYKTPAGLRFHRSSVHLGIRPHVCSRCGKSYVYRSDLVVHERTHAG 411
            C+ C K +  R+ L+ HER H     Y CD CGK   + + L +H+ S+HL  RPH+C  CG S+V R   ++HER H G
Sbjct:  652 CNICDKIFPKRATLLNHERVHGDDKFYECDDCGKKLASKSSLMYHKKSMHLRERPHMCHYCGDSFVSREARLIHERIHTG 731          
BLAST of mRNA_M-pyrifera_M_contig67623.16325.1 vs. uniprot
Match: UPI0005F371C9 (zinc finger protein 271-like n=1 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F371C9)

HSP 1 Score: 77.4 bits (189), Expect = 4.020e-13
Identity = 32/80 (40.00%), Postives = 48/80 (60.00%), Query Frame = 1
Query:  175 CSRCGKSYVYRSDLVVHERTH-TGVMYRCDSCGKSYKTPAGLRFHRSSVHLGIRPHVCSRCGKSYVYRSDLVVHERTHAG 411
            C  C K +  R+ L++H+R H    +Y CD CGK   + + L +H+ S+HL  RPH+C  CG S+V +   ++HER H G
Sbjct:  644 CDICSKIFPRRAVLLIHQRVHGDDKLYECDECGKKLASKSSLTYHKRSMHLRERPHMCHYCGDSFVSKEARLIHERIHTG 723          
BLAST of mRNA_M-pyrifera_M_contig67623.16325.1 vs. uniprot
Match: E9ILR3_SOLIN (Uncharacterized protein (Fragment) n=3 Tax=Solenopsis invicta TaxID=13686 RepID=E9ILR3_SOLIN)

HSP 1 Score: 77.4 bits (189), Expect = 4.040e-13
Identity = 34/78 (43.59%), Postives = 46/78 (58.97%), Query Frame = 1
Query:  175 CSRCGKSYVYRSDLVVHERTH-TGVMYRCDSCGKSYKTPAGLRFHRSSVHLGIRPHVCSRCGKSYVYRSDLVVHERTH 405
            C+ C K +  R+ L+ HER H     Y CD CGK   T + L +H+ S+HL  RPH+C  CG S+V R   ++HER H
Sbjct:  661 CNICNKIFSKRATLLNHERVHGDDKFYECDECGKKLATKSSLMYHKKSMHLRERPHMCHYCGDSFVSREARLIHERIH 738          
BLAST of mRNA_M-pyrifera_M_contig67623.16325.1 vs. uniprot
Match: E2AG61_CAMFO (Zinc finger protein 2 (Fragment) n=3 Tax=Camponotus floridanus TaxID=104421 RepID=E2AG61_CAMFO)

HSP 1 Score: 76.3 bits (186), Expect = 7.350e-13
Identity = 32/80 (40.00%), Postives = 47/80 (58.75%), Query Frame = 1
Query:  175 CSRCGKSYVYRSDLVVHERTH-TGVMYRCDSCGKSYKTPAGLRFHRSSVHLGIRPHVCSRCGKSYVYRSDLVVHERTHAG 411
            C+ C K +  R+ L+ HER H    +Y CD CGK   + +   +H+ S+HL  RPH+C  CG S+V +   ++HER H G
Sbjct:  223 CNICNKIFPKRTVLINHERVHGDDKLYECDECGKKLASKSSXMYHKKSMHLRERPHMCHYCGNSFVSKEARLIHERIHTG 302          
BLAST of mRNA_M-pyrifera_M_contig67623.16325.1 vs. uniprot
Match: A0A7K4Q9S3_MELMO (ZN436 protein (Fragment) n=1 Tax=Melospiza melodia TaxID=44397 RepID=A0A7K4Q9S3_MELMO)

HSP 1 Score: 72.0 bits (175), Expect = 2.740e-12
Identity = 37/106 (34.91%), Postives = 57/106 (53.77%), Query Frame = 1
Query:  100 GKSFKSSRGLRDHIRGSHQGIRPHVCSRCGKSYVYRSDLVVHERTHTGVMYRCDSCGKSYKT--PAGLRFHRSSVHLGIRPHVCSRCGKSYVYRSDLVVHERTHAG 411
            G + +S  GL + ++G  +  +PH CS CG+S+  RS L+VH+R HT    R +    +      + L  H        +PH C  CGKS+++RS+L+ H R H G
Sbjct:   55 GGAQRSELGLHEQLQGGQE--KPHKCSECGRSFKRRSCLIVHQRIHTAGQLRSEGEKPTLDLVQSSELEVHPQLQDGEKKPHKCLECGKSFMFRSELIKHCRIHVG 158          
BLAST of mRNA_M-pyrifera_M_contig67623.16325.1 vs. uniprot
Match: B4PGS0_DROYA (Uncharacterized protein n=3 Tax=melanogaster subgroup TaxID=32351 RepID=B4PGS0_DROYA)

HSP 1 Score: 74.3 bits (181), Expect = 3.150e-12
Identity = 37/124 (29.84%), Postives = 58/124 (46.77%), Query Frame = 1
Query:   79 SLCCGVCGKSFKSSRGLRDHIRGSHQGIRPHVCSRCGKSYVYRSDLV-----VHERTHTGVMYRCDSCGKSYKTPAGLRFHRSSVH-LGIRP------HVCSRCGKSYVYRSDLVVHERTHAGV 414
            +L C +C + F  S  L  H++  H+G+RPH C  C KSY            +H  +   +++ C  C K Y     L++H    H    +P      ++C  CGKS+V R+ L  H+R H  +
Sbjct:  197 TLECRICHRGFYKSSLLEAHMQ-QHEGLRPHTCVHCAKSYAXXXXXXXXLREMHHNSAARIIHACPLCNKVYTADRSLKYHMKRAHESNHKPESPDAVYICEECGKSFVRRAHLTRHKRVHGSI 319          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67623.16325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1W5C969_ANOGA5.450e-1533.09AGAP011410-PA (Fragment) n=1 Tax=Anopheles gambiae... [more]
A0A6I8TAC9_AEDAE1.140e-1334.43Uncharacterized protein n=5 Tax=Aedes aegypti TaxI... [more]
A0A401T2T2_CHIPU1.560e-1338.68Uncharacterized protein (Fragment) n=4 Tax=Orectol... [more]
UPI00143D00272.160e-1331.97zinc finger protein 271-like n=1 Tax=Belonocnema k... [more]
UPI00063ED5062.970e-1342.50zinc finger protein 85 isoform X1 n=2 Tax=Monomori... [more]
UPI0005F371C94.020e-1340.00zinc finger protein 271-like n=1 Tax=Vollenhovia e... [more]
E9ILR3_SOLIN4.040e-1343.59Uncharacterized protein (Fragment) n=3 Tax=Solenop... [more]
E2AG61_CAMFO7.350e-1340.00Zinc finger protein 2 (Fragment) n=3 Tax=Camponotu... [more]
A0A7K4Q9S3_MELMO2.740e-1234.91ZN436 protein (Fragment) n=1 Tax=Melospiza melodia... [more]
B4PGS0_DROYA3.150e-1229.84Uncharacterized protein n=3 Tax=melanogaster subgr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67623contigM-pyrifera_M_contig67623:465..1049 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score85.9
Seed ortholog evalue2.3e-14
Seed eggNOG ortholog7176.CPIJ018337-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Zinc finger, C2H2 type
EggNOG OGs38Z9R@33154,3C5YZ@33208,3D1HI@33213,3SV0I@50557,425GD@6656,456ME@7147,45IU0@7148,KOG1721@1,KOG1721@2759
COG Functional cat.S
Best tax levelNematocera
Best eggNOG OGNA|NA|NA
Exons1
Model size585
Cds size585
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816566.9514132-CDS-M-pyrifera_M_contig67623:464..10491622816566.9514132-CDS-M-pyrifera_M_contig67623:464..1049Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67623 465..1049 -
1692278050.9065588-CDS-M-pyrifera_M_contig67623:464..10491692278050.9065588-CDS-M-pyrifera_M_contig67623:464..1049Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67623 465..1049 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67623.16325.1prot_M-pyrifera_M_contig67623.16325.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67623 465..1049 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67623.16325.1

>prot_M-pyrifera_M_contig67623.16325.1 ID=prot_M-pyrifera_M_contig67623.16325.1|Name=mRNA_M-pyrifera_M_contig67623.16325.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=195bp
VGCNLCGRQVSVLSWPVHLGDYHRSVSLCCGVCGKSFKSSRGLRDHIRGS
HQGIRPHVCSRCGKSYVYRSDLVVHERTHTGVMYRCDSCGKSYKTPAGLR
FHRSSVHLGIRPHVCSRCGKSYVYRSDLVVHERTHAGVMYRCDSCGKSYK
SRSGLRDHRSSAHLGIRHPCSHCSKTFSQKSHLRTHLRKIHGVE*
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mRNA from alignment at M-pyrifera_M_contig67623:465..1049-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67623.16325.1 ID=mRNA_M-pyrifera_M_contig67623.16325.1|Name=mRNA_M-pyrifera_M_contig67623.16325.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=585bp|location=Sequence derived from alignment at M-pyrifera_M_contig67623:465..1049- (Macrocystis pyrifera P11B4 male)
GTGGGTTGCAATCTTTGTGGTCGTCAGGTGTCTGTGTTGTCTTGGCCTGT TCACCTTGGTGACTACCACCGCTCCGTGTCATTGTGCTGTGGTGTGTGTG GGAAGTCGTTCAAGTCCTCTAGAGGTCTCCGAGACCACATTCGAGGATCG CATCAAGGCATTCGTCCCCATGTTTGCTCTCGTTGTGGGAAGTCGTATGT TTATCGATCTGATCTTGTTGTACACGAGCGCACGCATACTGGTGTGATGT ATAGGTGTGACTCTTGTGGGAAATCGTACAAAACTCCCGCTGGCCTTCGT TTCCACCGATCTAGTGTCCACCTTGGCATTCGTCCCCATGTTTGCTCTCG TTGCGGGAAGTCGTATGTTTATCGGTCTGATCTTGTTGTACACGAGCGCA CGCATGCTGGTGTGATGTATAGGTGTGACTCTTGTGGGAAATCGTACAAA TCTCGCTCTGGCCTTCGTGACCACCGATCTAGTGCTCACCTTGGTATTCG CCATCCATGTTCTCATTGCAGCAAGACATTTTCCCAGAAATCCCACCTCC GCACACACCTGAGAAAGATCCATGGCGTGGAATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67623:465..1049-

>mRNA_M-pyrifera_M_contig67623.16325.1 ID=mRNA_M-pyrifera_M_contig67623.16325.1|Name=mRNA_M-pyrifera_M_contig67623.16325.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1170bp|location=Sequence derived from alignment at M-pyrifera_M_contig67623:465..1049- (Macrocystis pyrifera P11B4 male)
GTGGGTTGCAATCTTTGTGGTCGTCAGGTGTCTGTGTTGTCTTGGCCTGT
TCACCTTGGTGACTACCACCGCTCCGTGTCATTGTGCTGTGGTGTGTGTG
GGAAGTCGTTCAAGTCCTCTAGAGGTCTCCGAGACCACATTCGAGGATCG
CATCAAGGCATTCGTCCCCATGTTTGCTCTCGTTGTGGGAAGTCGTATGT
TTATCGATCTGATCTTGTTGTACACGAGCGCACGCATACTGGTGTGATGT
ATAGGTGTGACTCTTGTGGGAAATCGTACAAAACTCCCGCTGGCCTTCGT
TTCCACCGATCTAGTGTCCACCTTGGCATTCGTCCCCATGTTTGCTCTCG
TTGCGGGAAGTCGTATGTTTATCGGTCTGATCTTGTTGTACACGAGCGCA
CGCATGCTGGTGTGATGTATAGGTGTGACTCTTGTGGGAAATCGTACAAA
TCTCGCTCTGGCCTTCGTGACCACCGATCTAGTGCTCACCTTGGTATTCG
CCATCCATGTTCTCATTGCAGCAAGACATTTTCCCAGAAATCCCACCTCC
GCACACACCTGAGAAAGATCCATGGCGTGGAATAGGTGGGTTGCAATCTT
TGTGGTCGTCAGGTGTCTGTGTTGTCTTGGCCTGTTCACCTTGGTGACTA
CCACCGCTCCGTGTCATTGTGCTGTGGTGTGTGTGGGAAGTCGTTCAAGT
CCTCTAGAGGTCTCCGAGACCACATTCGAGGATCGCATCAAGGCATTCGT
CCCCATGTTTGCTCTCGTTGTGGGAAGTCGTATGTTTATCGATCTGATCT
TGTTGTACACGAGCGCACGCATACTGGTGTGATGTATAGGTGTGACTCTT
GTGGGAAATCGTACAAAACTCCCGCTGGCCTTCGTTTCCACCGATCTAGT
GTCCACCTTGGCATTCGTCCCCATGTTTGCTCTCGTTGCGGGAAGTCGTA
TGTTTATCGGTCTGATCTTGTTGTACACGAGCGCACGCATGCTGGTGTGA
TGTATAGGTGTGACTCTTGTGGGAAATCGTACAAATCTCGCTCTGGCCTT
CGTGACCACCGATCTAGTGCTCACCTTGGTATTCGCCATCCATGTTCTCA
TTGCAGCAAGACATTTTCCCAGAAATCCCACCTCCGCACACACCTGAGAA
AGATCCATGGCGTGGAATAG
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