mRNA_M-pyrifera_M_contig67615.16316.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67615.16316.1
Unique NamemRNA_M-pyrifera_M_contig67615.16316.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67615.16316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67615contigM-pyrifera_M_contig67615:69..992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score60.8
Seed ortholog evalue1.2e-06
Seed eggNOG ortholog6087.XP_002165837.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.MAC/Perforin domain
EggNOG OGs2E0E4@1,2S7UT@2759,3ADT8@33154
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size924
Cds size924
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816566.4471726-CDS-M-pyrifera_M_contig67615:68..9921622816566.4471726-CDS-M-pyrifera_M_contig67615:68..992Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67615 69..992 -
1692278050.6031604-CDS-M-pyrifera_M_contig67615:68..9921692278050.6031604-CDS-M-pyrifera_M_contig67615:68..992Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67615 69..992 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67615.16316.1prot_M-pyrifera_M_contig67615.16316.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67615 69..992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67615.16316.1

>prot_M-pyrifera_M_contig67615.16316.1 ID=prot_M-pyrifera_M_contig67615.16316.1|Name=mRNA_M-pyrifera_M_contig67615.16316.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=308bp
FPGSVALGAGYNILAGDPIAASSDPGYTPGSVFNPNCASCFSGGRTFGPF
KLPNDVDVVAEQTCSYSGVSFAFHDTTTYQSASEKSVTDDGGFSTLLGLV
GARFSASSFAQKLVNATVGGDVVVTSSTGTCAAYGVSIEPKTYDFTESLT
EDFVNGLATLPSTFNPLNATNVALFEKFIAEFGTHTVVSTTLGGQASQVT
TFDSASFSFLQTLVEDIEATASASLLIFFGGSISASAKVTEEEYLAFATS
FSSNETNCRPFCPPSGNLSVDDPTGAWLPLLQFEHGGTAAPIAIQLMPLE
ALLATLKH
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mRNA from alignment at M-pyrifera_M_contig67615:69..992-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67615.16316.1 ID=mRNA_M-pyrifera_M_contig67615.16316.1|Name=mRNA_M-pyrifera_M_contig67615.16316.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=924bp|location=Sequence derived from alignment at M-pyrifera_M_contig67615:69..992- (Macrocystis pyrifera P11B4 male)
TTCCCGGGCAGCGTAGCCCTCGGAGCCGGGTACAACATTCTTGCTGGTGA
TCCAATTGCAGCTTCTAGCGATCCTGGGTATACGCCTGGCAGTGTATTCA
ATCCCAATTGTGCATCATGTTTCTCTGGAGGCCGTACATTTGGCCCCTTC
AAACTCCCTAATGATGTAGACGTCGTTGCTGAACAAACTTGCTCGTATTC
TGGGGTTTCGTTTGCTTTCCATGACACCACAACGTATCAATCTGCAAGTG
AAAAGAGTGTAACAGATGACGGAGGGTTTTCTACATTGCTAGGGCTTGTA
GGCGCTCGGTTTTCTGCCTCAAGCTTTGCACAAAAGCTTGTAAATGCAAC
AGTTGGTGGAGACGTTGTTGTCACTTCGTCTACAGGGACATGTGCTGCGT
ATGGGGTGAGTATTGAACCAAAGACATATGATTTTACCGAGTCACTTACG
GAGGATTTTGTGAACGGTCTGGCAACTCTTCCATCCACCTTCAATCCACT
CAATGCAACCAATGTTGCCTTGTTTGAGAAGTTTATTGCAGAGTTTGGGA
CACATACTGTTGTTTCCACGACTCTAGGGGGCCAAGCGTCTCAAGTAACA
ACGTTTGACTCTGCGTCATTCTCTTTCCTCCAAACCTTGGTAGAAGACAT
CGAGGCTACTGCGAGTGCTTCGCTGCTCATCTTCTTTGGAGGAAGTATCA
GTGCAAGCGCAAAAGTAACAGAAGAAGAGTATCTTGCGTTTGCTACAAGT
TTTTCCAGCAACGAAACAAATTGTCGTCCATTTTGTCCACCAAGTGGCAA
TTTAAGTGTTGATGATCCAACTGGAGCCTGGCTTCCTTTGTTGCAATTTG
AACATGGGGGAACTGCTGCTCCCATTGCAATTCAACTCATGCCATTGGAA
GCATTACTTGCAACTCTCAAACAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67615:69..992-

>mRNA_M-pyrifera_M_contig67615.16316.1 ID=mRNA_M-pyrifera_M_contig67615.16316.1|Name=mRNA_M-pyrifera_M_contig67615.16316.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1848bp|location=Sequence derived from alignment at M-pyrifera_M_contig67615:69..992- (Macrocystis pyrifera P11B4 male)
TTCCCGGGCAGCGTAGCCCTCGGAGCCGGGTACAACATTCTTGCTGGTGA
TCCAATTGCAGCTTCTAGCGATCCTGGGTATACGCCTGGCAGTGTATTCA
ATCCCAATTGTGCATCATGTTTCTCTGGAGGCCGTACATTTGGCCCCTTC
AAACTCCCTAATGATGTAGACGTCGTTGCTGAACAAACTTGCTCGTATTC
TGGGGTTTCGTTTGCTTTCCATGACACCACAACGTATCAATCTGCAAGTG
AAAAGAGTGTAACAGATGACGGAGGGTTTTCTACATTGCTAGGGCTTGTA
GGCGCTCGGTTTTCTGCCTCAAGCTTTGCACAAAAGCTTGTAAATGCAAC
AGTTGGTGGAGACGTTGTTGTCACTTCGTCTACAGGGACATGTGCTGCGT
ATGGGGTGAGTATTGAACCAAAGACATATGATTTTACCGAGTCACTTACG
GAGGATTTTGTGAACGGTCTGGCAACTCTTCCATCCACCTTCAATCCACT
CAATGCAACCAATGTTGCCTTGTTTGAGAAGTTTATTGCAGAGTTTGGGA
CACATACTGTTGTTTCCACGACTCTAGGGGGCCAAGCGTCTCAAGTAACA
ACGTTTGACTCTGCGTCATTCTCTTTCCTCCAAACCTTGGTAGAAGACAT
CGAGGCTACTGCGAGTGCTTCGCTGCTCATCTTCTTTGGAGGAAGTATCA
GTGCAAGCGCAAAAGTAACAGAAGAAGAGTATCTTGCGTTTGCTACAAGT
TTTTCCAGCAACGAAACAAATTGTCGTCCATTTTGTCCACCAAGTGGCAA
TTTAAGTGTTGATGATCCAACTGGAGCCTGGCTTCCTTTGTTGCAATTTG
AACATGGGGGAACTGCTGCTCCCATTGCAATTCAACTCATGCCATTGGAA
GCATTACTTGCAACTCTCAAACACTTCCCGGGCAGCGTAGCCCTCGGAGC
CGGGTACAACATTCTTGCTGGTGATCCAATTGCAGCTTCTAGCGATCCTG
GGTATACGCCTGGCAGTGTATTCAATCCCAATTGTGCATCATGTTTCTCT
GGAGGCCGTACATTTGGCCCCTTCAAACTCCCTAATGATGTAGACGTCGT
TGCTGAACAAACTTGCTCGTATTCTGGGGTTTCGTTTGCTTTCCATGACA
CCACAACGTATCAATCTGCAAGTGAAAAGAGTGTAACAGATGACGGAGGG
TTTTCTACATTGCTAGGGCTTGTAGGCGCTCGGTTTTCTGCCTCAAGCTT
TGCACAAAAGCTTGTAAATGCAACAGTTGGTGGAGACGTTGTTGTCACTT
CGTCTACAGGGACATGTGCTGCGTATGGGGTGAGTATTGAACCAAAGACA
TATGATTTTACCGAGTCACTTACGGAGGATTTTGTGAACGGTCTGGCAAC
TCTTCCATCCACCTTCAATCCACTCAATGCAACCAATGTTGCCTTGTTTG
AGAAGTTTATTGCAGAGTTTGGGACACATACTGTTGTTTCCACGACTCTA
GGGGGCCAAGCGTCTCAAGTAACAACGTTTGACTCTGCGTCATTCTCTTT
CCTCCAAACCTTGGTAGAAGACATCGAGGCTACTGCGAGTGCTTCGCTGC
TCATCTTCTTTGGAGGAAGTATCAGTGCAAGCGCAAAAGTAACAGAAGAA
GAGTATCTTGCGTTTGCTACAAGTTTTTCCAGCAACGAAACAAATTGTCG
TCCATTTTGTCCACCAAGTGGCAATTTAAGTGTTGATGATCCAACTGGAG
CCTGGCTTCCTTTGTTGCAATTTGAACATGGGGGAACTGCTGCTCCCATT
GCAATTCAACTCATGCCATTGGAAGCATTACTTGCAACTCTCAAACAC
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