mRNA_M-pyrifera_M_contig6761.16314.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6761.16314.1
Unique NamemRNA_M-pyrifera_M_contig6761.16314.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig6761.16314.1 vs. uniprot
Match: A0A6H5L257_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L257_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 3.230e-48
Identity = 98/121 (80.99%), Postives = 102/121 (84.30%), Query Frame = 1 
Query:  334 LNPAQIAMAAARNLGVHSALPAQAGQGLSGLGASA--GYQANPQLLAQLMRPAHQQXXXXXAAPAQFSLPLGAGA--VPGMLGGMGMGMGDKTVRELFVGNTPQGTSDFVLLEFLNAAMKQ 684
            LNPAQIA+AAARNLGV SALP QA  GLSGLGA+   G+QANPQLLAQ+MR A QQ       P QFSLPLGAGA  VPGMLGGMGMGMGDKTVRELFVGNTPQGTSDFVLLEFLNAAMKQ
Sbjct:   31 LNPAQIALAAARNLGVPSALPGQAAGGLSGLGAAGAGGFQANPQLLAQVMRSAQQQA----GTPGQFSLPLGAGAGAVPGMLGGMGMGMGDKTVRELFVGNTPQGTSDFVLLEFLNAAMKQ 147
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BLAST of mRNA_M-pyrifera_M_contig6761.16314.1 vs. uniprot
Match: D7FHG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG0_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 3.460e-47
Identity = 98/121 (80.99%), Postives = 102/121 (84.30%), Query Frame = 1 
Query:  334 LNPAQIAMAAARNLGVHSALPAQAGQGLSGLGASA--GYQANPQLLAQLMRPAHQQXXXXXAAPAQFSLPLGA--GAVPGMLGGMGMGMGDKTVRELFVGNTPQGTSDFVLLEFLNAAMKQ 684
            LNPAQIA+AAARNLGV SALP QA  GLSGLGA+   G+QANPQLLAQ+MR A QQ       P QFSLPLGA  GAVPGMLGGMGMGMGDKTVRELFVGNTPQGTSDFVLLEFLNAAMKQ
Sbjct:  132 LNPAQIALAAARNLGVPSALPGQAAGGLSGLGAAGAGGFQANPQLLAQVMRSAQQQA----GTPGQFSLPLGAAAGAVPGMLGGMGMGMGDKTVRELFVGNTPQGTSDFVLLEFLNAAMKQ 248
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BLAST of mRNA_M-pyrifera_M_contig6761.16314.1 vs. uniprot
Match: A0A7S0G8A8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G8A8_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 8.780e-5
Identity = 29/51 (56.86%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:  547 GAVPGMLGGMGMGMG-----DKTVRELFVGNTPQGTSDFVLLEFLNAAMKQ 684
            G VPGM+  M M        DK +RELFVGNTPQGTS+ +L EFLN AM++
Sbjct:   83 GGVPGMMMNMMMATPMTNPQDKVMRELFVGNTPQGTSEILLREFLNGAMRR 133
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6761.16314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L257_9PHAE3.230e-4880.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHG0_ECTSI3.460e-4780.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0G8A8_9STRA8.780e-556.86Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6761contigM-pyrifera_M_contig6761:5435..9811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size684
Cds size684
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6761.16314.1prot_M-pyrifera_M_contig6761.16314.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6761 5435..9811 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816566.3318017-CDS-M-pyrifera_M_contig6761:5434..55921622816566.3318017-CDS-M-pyrifera_M_contig6761:5434..5592Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6761 5435..5592 -
1692278050.5113354-CDS-M-pyrifera_M_contig6761:5434..55921692278050.5113354-CDS-M-pyrifera_M_contig6761:5434..5592Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6761 5435..5592 -
1622816566.342209-CDS-M-pyrifera_M_contig6761:6265..64621622816566.342209-CDS-M-pyrifera_M_contig6761:6265..6462Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6761 6266..6462 -
1692278050.5253284-CDS-M-pyrifera_M_contig6761:6265..64621692278050.5253284-CDS-M-pyrifera_M_contig6761:6265..6462Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6761 6266..6462 -
1622816566.3549166-CDS-M-pyrifera_M_contig6761:7225..73631622816566.3549166-CDS-M-pyrifera_M_contig6761:7225..7363Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6761 7226..7363 -
1692278050.5360842-CDS-M-pyrifera_M_contig6761:7225..73631692278050.5360842-CDS-M-pyrifera_M_contig6761:7225..7363Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6761 7226..7363 -
1622816566.3659396-CDS-M-pyrifera_M_contig6761:8846..89811622816566.3659396-CDS-M-pyrifera_M_contig6761:8846..8981Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6761 8847..8981 -
1692278050.5554256-CDS-M-pyrifera_M_contig6761:8846..89811692278050.5554256-CDS-M-pyrifera_M_contig6761:8846..8981Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6761 8847..8981 -
1622816566.3761392-CDS-M-pyrifera_M_contig6761:9755..98111622816566.3761392-CDS-M-pyrifera_M_contig6761:9755..9811Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6761 9756..9811 -
1692278050.5700052-CDS-M-pyrifera_M_contig6761:9755..98111692278050.5700052-CDS-M-pyrifera_M_contig6761:9755..9811Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6761 9756..9811 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6761.16314.1

>prot_M-pyrifera_M_contig6761.16314.1 ID=prot_M-pyrifera_M_contig6761.16314.1|Name=mRNA_M-pyrifera_M_contig6761.16314.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=228bp
RSRSRERRRRRSRSDSRERSGRKHRRRSRSNEKHHRRSRRDSSRERRGSG
RRSRSRSGSDSDYGRGRSRSRSGDKSSAAKNPHLGLGEPRRRGLTCRTLS
TVVAIHTATNHLNPAQIAMAAARNLGVHSALPAQAGQGLSGLGASAGYQA
NPQLLAQLMRPAHQQQQQQQAAPAQFSLPLGAGAVPGMLGGMGMGMGDKT
VRELFVGNTPQGTSDFVLLEFLNAAMKQ
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mRNA from alignment at M-pyrifera_M_contig6761:5435..9811-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6761.16314.1 ID=mRNA_M-pyrifera_M_contig6761.16314.1|Name=mRNA_M-pyrifera_M_contig6761.16314.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4377bp|location=Sequence derived from alignment at M-pyrifera_M_contig6761:5435..9811- (Macrocystis pyrifera P11B4 male)
CGCAGCAGGAGCCGTGAGCGCAGGCGCCGCAGGTCTCGCAGCGACTCCAG
GGAGAGGTGCGTATTTATTCATTGGCGTGTTAAGTAGGATAAGTGTGTGT
GTTGGAATTGGAATTGGGGAGGGGGTCGGGAGGCTTGTCTTGTTGTCGTG
GGCTTACGTGTGTGGTATTGTGCGTGTTGAATACTTTCTGTGTATTGGAT
GCGGTGGTGAGGTGTATGGAGGGGGGTGGGGGGCGGGAGTTAGTTGTCTT
GGTGATGGTATTCGTGATAGGTGTGGGTCGGGGAGGAGGGGCGTGTTGGT
TTTGTTGTTGTGATGGTGGCGGTGATGATTTTTGGTGACGTGGTTATACC
TGGTACCTACCATGTAATTTACTGCGGCAGCAGCACGTATAGGCTTCGTA
CGTACCTGGTAATACAGTACATGTCGTATCGTGTGTGTCGTGTACGTTGT
ACGTTTGTTGCGGTGGTGAGGTGTGGGGGGGGTAGGGTTGGGGGCGGGGC
CGGGAGTTGGTTGTGTTGGTGATGGTAGTCGTGGTAGGTGTGGGTCGGGG
AGGAGGGGCGCGTTGGTGTTGGGTGATGGTGATGAGTGGGGGAGAGGGAT
GTGTTGGTGGTGATAGTGATGATGGTGATTTTTGGTTTGGATTTTGATGG
TGATGGTGACGTGGTTATACCTGGTACCTACCATGTAACGTAATGCGGCA
GCACCACGTATAGACTTGTCACGTACTGCTATTGTAACTGCTGTTGTAAT
AATAACGACAGCAGTATTTGTTACTGCTTCTAAGCTGTTAAGATTTGTTG
TTCATCATTTTGCTTTTTTCTTCTGCACAGGAGCGGCCGTAAGCACCGCC
GCAGGTCACGCTCTAACGAGAAGCACCACCGTCGCAGCAGGCGCGACAGC
AGCAGGGAGCGCCGGGGGAGTGGGCGCCGCAGCCGCAGCCGCAGCGGCAG
CGACAGCGACTATGGGTGAGCCAGAGGAAGGGGGATAACAAGGGGAGCGA
AGGAGGCGGTTAATGGGGGGGGAGGGGGAGGGGAGTGGCGCACTCCTGTG
TTGCTTGGCTCAGTCATTTGACCGTTAACCGCGTAACCGATTCGAGGCGG
GGGGGGGGGGGGGGGTTGGGAAGGTACGGGGAATGTTATTGAATAGGCGG
TAGGCGGGAGAGGAGAGGAGCGATAGCGACTCATCTGTGGGCTAGGGGGA
GGAGAGTGAAGGAGGCACTGAATGGGACGGGTAAAGGGGTAAGCAAACCG
GTGGGAAGGTGAAGGGGGAAGTTATGTGGACGATGCATGGGAATTGGATG
TGAGTGGAAAGGATGGGAAGGGGAGGGTAACCGAGTATTGGTGAAGCAGG
GGGCACAGACTATTGAGTGAGCCAGAGGTAAAGAGAGGTAGAGAGGGGAG
TGAAGCAGGCGGGGGTTAGGGAGGGGGAGGAAGGGGCAGGGTTGGGGCGG
AGGGAGGGGGAGAAGCAATGCGTATGTGGGTGAGGGAGAAAAAATAAAAA
TAAAGACGGAGGATAAGGTTGGGGGAGGTGAAATAGGCCGCTGATGGGAG
AGGAGAGGGAGGGGGTAGCGGTTGGTGGGGGGGAGTGACTACCGGTACGC
GTAAGAAGGAGAGAGAGCGGGGATTCAATTGGTGGTGGATGGGAGGGGAG
GGGGGCGGTGGGGGAGTAGTGGCCACAGGTGTGCGAGCGTGAGAGAGGAA
GTATTGCGTAGGCGGTGCATGGCAGGAGGAGCAGGGGTAGGGCTGGGAGC
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAACAAACTCTGAGGGGGG
GGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGCGAGAAGGGGAAAAAAACCATTGGGGGGGAGGGATGGGGGG
GGGGAAAGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGAG
GGAGTGACTTCTGGTGAGGGAGAGCGTTTTTTTTTATTTTTTCATCGATT
GTGGGCTAGCTGTCGGCGTGGCTGCCCACTAACTCCCCTCCACCCCCTGG
CGATGGGTCCTCCCTGGCATAGCGCGCGACTGATGGCGGGGGTTGCATGG
CTCATTACCCGTTCCTCTTAATTGGAAACTCCTGGTATACTTTCTTGTTC
ACTTTTTCCTCCCCTCCTCCGCCCCCCCCGCTGCTGCTCCGCCCTGCGCC
GCCTCCGATGCTGTTCGTGCGTCTGTTGTTGTGTGCGTGTGCGTTTTTTG
TTCGGGTTGGCGGAAAACCGTGGTTGGCTTTTGTGTTGACCTGTCCCTTC
GCCTTTTTTCCTCCTCCTGCTCCGCCCTGCGCCTTCGGCTGTTGTCGTGT
CCCTGTACGTGTGGGTGTCTGTGGGCTTGTGGATTCGCGTGTATTGCGTT
TTTTTTTTGTTATTTTCGATCCGGTCTGGTTTGGATGCTCATGCTCAGGC
GGGGACGGAGCCGGAGCCGTAGCGGCGATAAGAGCTCTGCTGCCAAGAAC
CCTCACCTCGGTCTAGGTGAGCCACGCAGACGCGGCTTGACGTGTCGTAC
GTTGTCAACTGTGGTGGCTATCCATACTGCAACAAAGTTGAATCGACGCA
CCTCCACAGCGATCATCCTATGTGACTTTACACCACTACGAGCTGGTTAA
ATCGACACGTTCCCGCAGCCGCGGGCAGCAGCGACTATGCTTATGGTACT
AAGAACCCTCACCTCGGCCTGGGTGACACACGCACTCGCGGCTTGGCTTG
TTTTATTTACGTGGCAAACTTTGTGGCTGTCCATACTACAGTAGAGTTGA
ATCGACGCACTTCTCCAGCCACCCCTCGAGTGAAAACGACGCGTTTCCGC
AGCCGCAGCAGTGGCGACAAATAATTGTGGTGCTTTGAACCCTCATCTGG
GCCTCTGGGTGAGACACGCAAACGCGGCTTGACGTGTTTTGTGTATGACA
CGACCGCGACGACGTGTTCATGTAATAATATTACACATTCGCGACTACCC
TTACTACAAGACGGTTACACCGACACATTTCCAAACCTCGTTGGCTATTG
CTTGCTGCTACGATCGAGTTACTACTGTAGATCGACCGCAGTGACGACAA
TAATTATGGTGCTAAGGACCCCTCCCATCATCGGGCCCGTCGTCCCTTCA
TTGTCCACTCCCCCGTCCCCCCTCCGTCTCGAAAGGGATGCGTGGTCAAT
GGTCAAAGGAGTAAAGGCAAGCAACAAATGAATACCCCCCGTCCCCGTCC
CCGTCCCCCCTCCCCCTTCTCTACCAACTCTCCTTACTTTTTCCCCCCTA
CAGCCCCCGCCATGGGCGGAAATATGCCGACCAACCTACCCGTACAGAGC
CATCTCAACCCGGCGCAGATCGCTATGGCTGCCGCCCGCAACCTCGGAGT
GCACAGCGCCCTGCCCGCCCAGGCAGGTCAGGGCCTCTCGGGGCTTGGAG
CAAGTGCCGGCTACCAGGCCAACCCGCAGCTGCTGGCCCAGCTCATGCGG
CCCGCGCATCAGCAGCAGCAGCAGCAGCAGGCGGCACCAGCACAATGTGG
GTTTATATCGTGTGGAGGGAGGGTTGCGGGCGGCGCGGGGGGGTTGTTGT
GGTTTTTGTGTTTTAGTTAGAGGGGGGGGCGGGGTGGGAAGGGGGGGGTG
GAGGCAACAGTGAAAAACTACCTGGTAAGAGAGCTGTGAATGTGTGATTG
GTGATGCGCGTGTTCGTGTCTGTGTTCTGTGTTGGAGGTCATGGGCTTGT
TGTGTTTTTGGTTTTGTTTTTTTTGTTGTTGTGGGTTTGCATCGAACCAG
GTGCGTACATGTTTTGTGTTTGTTCATATTTAGTTGTTCGAAATATAAAG
GATAGAGCACTGAGCTACTCAGTCTGCGCGGACTGAGTAACTCAGTGGTC
TGTTGTAAGTATTTTGAACAAAATAAGTATCTCTGGGCTCGATACGGCCT
CCCACCGACAACATCCTGCGAGGTTGAGCAAGCCCCTCATCAGCGCCTGG
TTCTTCCTCCATATGATATCCCTCCCTAGTCGTGCGTTCTTTTTACCCAA
GCGGTTCTCCTCCACTTTCGACCCTCTGATCGAGTCGACATTTCGAAAGT
TTCATAAGAGAGACGGTATCCATCACCAAAGCTCATGATCGATTGTGTTG
CTAACAAGCGCCGCTGCCGTCGCTCGTGTCCCCTCCCCCACCGGTTGAAA
CAACCTGCCGTCGATACAGTCTCGCTCCCTCTCGGGGCGGGGGCCGTCCC
GGGCATGCTGGGAGGAATGGGTATGGGCATGGGAGACAAGACCGTGCGCG
AGCTGTTCGTGGGCAATACGCCCCAGGGTACCTCGGACTTTGTTCTTCTC
GAGTTCCTCAACGCCGCCATGAAGCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6761:5435..9811-

>mRNA_M-pyrifera_M_contig6761.16314.1 ID=mRNA_M-pyrifera_M_contig6761.16314.1|Name=mRNA_M-pyrifera_M_contig6761.16314.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1368bp|location=Sequence derived from alignment at M-pyrifera_M_contig6761:5435..9811- (Macrocystis pyrifera P11B4 male)
CGCAGCAGGAGCCGTGAGCGCAGGCGCCGCAGGTCTCGCAGCGACTCCAG
GGAGAGCGCAGCAGGAGCCGTGAGCGCAGGCGCCGCAGGTCTCGCAGCGA
CTCCAGGGAGAGGAGCGGCCGTAAGCACCGCCGCAGGTCACGCTCTAACG
AGAAGCACCACCGTCGCAGCAGGCGCGACAGCAGCAGGGAGCGCCGGGGG
AGTGGGCGCCGCAGCCGCAGCCGCAGCGGCAGCGACAGCGACTATGGGAG
CGGCCGTAAGCACCGCCGCAGGTCACGCTCTAACGAGAAGCACCACCGTC
GCAGCAGGCGCGACAGCAGCAGGGAGCGCCGGGGGAGTGGGCGCCGCAGC
CGCAGCCGCAGCGGCAGCGACAGCGACTATGGGCGGGGACGGAGCCGGAG
CCGTAGCGGCGATAAGAGCTCTGCTGCCAAGAACCCTCACCTCGGTCTAG
GTGAGCCACGCAGACGCGGCTTGACGTGTCGTACGTTGTCAACTGTGGTG
GCTATCCATACTGCAACAAAGCGGGGACGGAGCCGGAGCCGTAGCGGCGA
TAAGAGCTCTGCTGCCAAGAACCCTCACCTCGGTCTAGGTGAGCCACGCA
GACGCGGCTTGACGTGTCGTACGTTGTCAACTGTGGTGGCTATCCATACT
GCAACAAACCATCTCAACCCGGCGCAGATCGCTATGGCTGCCGCCCGCAA
CCTCGGAGTGCACAGCGCCCTGCCCGCCCAGGCAGGTCAGGGCCTCTCGG
GGCTTGGAGCAAGTGCCGGCTACCAGGCCAACCCGCAGCTGCTGGCCCAG
CTCATGCGGCCCGCGCATCAGCAGCAGCAGCAGCAGCAGGCGGCACCAGC
ACAATCCATCTCAACCCGGCGCAGATCGCTATGGCTGCCGCCCGCAACCT
CGGAGTGCACAGCGCCCTGCCCGCCCAGGCAGGTCAGGGCCTCTCGGGGC
TTGGAGCAAGTGCCGGCTACCAGGCCAACCCGCAGCTGCTGGCCCAGCTC
ATGCGGCCCGCGCATCAGCAGCAGCAGCAGCAGCAGGCGGCACCAGCACA
ATTCTCGCTCCCTCTCGGGGCGGGGGCCGTCCCGGGCATGCTGGGAGGAA
TGGGTATGGGCATGGGAGACAAGACCGTGCGCGAGCTGTTCGTGGGCAAT
ACGCCCCAGGGTACCTCGGACTTTGTTCTTCTCGAGTTCCTCAACGCCGC
CATGAAGCAGTCTCGCTCCCTCTCGGGGCGGGGGCCGTCCCGGGCATGCT
GGGAGGAATGGGTATGGGCATGGGAGACAAGACCGTGCGCGAGCTGTTCG
TGGGCAATACGCCCCAGGGTACCTCGGACTTTGTTCTTCTCGAGTTCCTC
AACGCCGCCATGAAGCAG
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