mRNA_M-pyrifera_M_contig100731.163.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100731.163.1
Unique NamemRNA_M-pyrifera_M_contig100731.163.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100731.163.1 vs. uniprot
Match: A0A7S2ZLU3_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZLU3_9RHOD)

HSP 1 Score: 84.3 bits (207), Expect = 5.110e-19
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 1
Query:   19 LQEDVRHCWKCRKDVGLLGFKCQCKYVFCAKHRYGDKHDCPVDYRAREQKKLNKNLENVVGGKVMRI 219
            +Q++   C+ CR+ VGLLGFKCQC YVFC +HRY DKHDC  D++AR Q++L +    V   KV +I
Sbjct:   87 VQKNTSRCFACRRKVGLLGFKCQCNYVFCGEHRYSDKHDCDFDWKARAQERLIRANPVVKADKVQKI 153          
BLAST of mRNA_M-pyrifera_M_contig100731.163.1 vs. uniprot
Match: A0A7S0G8W7_9RHOD (Hypothetical protein n=4 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G8W7_9RHOD)

HSP 1 Score: 84.0 bits (206), Expect = 1.110e-18
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 1
Query:   19 LQEDVRHCWKCRKDVGLLGFKCQCKYVFCAKHRYGDKHDCPVDYRAREQKKLNKNLENVVGGKVMRI 219
            +Q++   C+ CRK VGLLGFKCQC YVFC +HRY DKHDC  D++ R Q++L +    V   KV +I
Sbjct:  105 VQKNTSRCFACRKKVGLLGFKCQCSYVFCGEHRYSDKHDCDFDWKTRAQERLIRANPVVKADKVQKI 171          
BLAST of mRNA_M-pyrifera_M_contig100731.163.1 vs. uniprot
Match: I3JAM3_ORENI (AN1-type domain-containing protein n=5 Tax=Percomorphaceae TaxID=1489872 RepID=I3JAM3_ORENI)

HSP 1 Score: 75.1 bits (183), Expect = 5.140e-16
Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = 1
Query:   10 PDVLQEDVRHCWKCRKDVGLLGFKCQCKYVFCAKHRYGDKHDCPVDYRAREQKKLNKNLENVVGGKVMRI 219
            PD  ++  R C+ CRK VGL GF C+C  +FCA HRY DKHDCP DYR+    +L K    VV  K+ ++
Sbjct:   28 PDKNKKKNR-CFSCRKKVGLTGFDCRCGNLFCAIHRYSDKHDCPYDYRSAAAAQLRKENPIVVAEKIQKL 96          
BLAST of mRNA_M-pyrifera_M_contig100731.163.1 vs. uniprot
Match: A0A3B3UG86_9TELE (AN1-type domain-containing protein n=1 Tax=Poecilia latipinna TaxID=48699 RepID=A0A3B3UG86_9TELE)

HSP 1 Score: 74.7 bits (182), Expect = 9.220e-16
Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = 1
Query:   10 PDVLQEDVRHCWKCRKDVGLLGFKCQCKYVFCAKHRYGDKHDCPVDYRAREQKKLNKNLENVVGGKVMRI 219
            PD  ++  R C+ CRK VGL GF C+C  +FCA HRY DKHDCP DYR+    ++ K    VV  K+ ++
Sbjct:   37 PDKNKKKNR-CFSCRKKVGLTGFDCRCGNLFCAIHRYSDKHDCPYDYRSAAAARIRKENPIVVAEKIQKL 105          
BLAST of mRNA_M-pyrifera_M_contig100731.163.1 vs. uniprot
Match: A0A4W4GHM6_ELEEL (AN1-type zinc finger protein 5-like n=1 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4GHM6_ELEEL)

HSP 1 Score: 74.3 bits (181), Expect = 1.060e-15
Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 1
Query:   10 PDVLQEDVRHCWKCRKDVGLLGFKCQCKYVFCAKHRYGDKHDCPVDYRAREQKKLNKNLENVVGGKVMRI 219
            PD  ++  R C+ CRK VGL GF C+C  +FCA HRY DKHDCP DYR     ++ K    VV  K+ ++
Sbjct:   29 PDKSKKKNR-CFTCRKKVGLTGFDCRCGNLFCAIHRYSDKHDCPYDYRGAAAARIRKENPIVVAEKIQKL 97          
BLAST of mRNA_M-pyrifera_M_contig100731.163.1 vs. uniprot
Match: A0A671QAG0_9TELE (AN1-type domain-containing protein n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=A0A671QAG0_9TELE)

HSP 1 Score: 73.9 bits (180), Expect = 1.260e-15
Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 1
Query:   10 PDVLQEDVRHCWKCRKDVGLLGFKCQCKYVFCAKHRYGDKHDCPVDYRAREQKKLNKNLENVVGGKVMRI 219
            PD  ++  R C+ CRK VGL GF C+C  +FCA HRY DKHDCP DYR     ++ K    VV  K+ ++
Sbjct:   22 PDKNKKKNR-CFTCRKKVGLTGFDCRCGNLFCAIHRYSDKHDCPYDYRGAAAARIRKENPIVVAEKIQKL 90          
BLAST of mRNA_M-pyrifera_M_contig100731.163.1 vs. uniprot
Match: A0A8C6MGN9_NOTFU (Zgc:77486 n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6MGN9_NOTFU)

HSP 1 Score: 76.6 bits (187), Expect = 1.300e-15
Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 1
Query:    1 EEEPDVLQEDVRHCWKCRKDVGLLGFKCQCKYVFCAKHRYGDKHDCPVDYRAREQKKLNKNLENVVGGKVMRI 219
            E+ PD  ++  R C+ CRK VGL GF C+C  VFCA HRY DKHDCP DYR+    ++ K    VV  K+ ++
Sbjct:  125 EQTPDKNKKANR-CFSCRKKVGLTGFDCRCGNVFCAIHRYSDKHDCPYDYRSAAAARIRKENPIVVAEKIQKL 196          
BLAST of mRNA_M-pyrifera_M_contig100731.163.1 vs. uniprot
Match: A0A1A8UXP5_NOTFU (Uncharacterized protein n=9 Tax=Aplocheiloidei TaxID=45443 RepID=A0A1A8UXP5_NOTFU)

HSP 1 Score: 76.6 bits (187), Expect = 1.910e-15
Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 1
Query:    1 EEEPDVLQEDVRHCWKCRKDVGLLGFKCQCKYVFCAKHRYGDKHDCPVDYRAREQKKLNKNLENVVGGKVMRI 219
            E+ PD  ++  R C+ CRK VGL GF C+C  VFCA HRY DKHDCP DYR+    ++ K    VV  K+ ++
Sbjct:  146 EQTPDKNKKANR-CFSCRKKVGLTGFDCRCGNVFCAIHRYSDKHDCPYDYRSAAAARIRKENPIVVAEKIQKL 217          
BLAST of mRNA_M-pyrifera_M_contig100731.163.1 vs. uniprot
Match: M3XGW7_LATCH (Uncharacterized protein n=2 Tax=Latimeria chalumnae TaxID=7897 RepID=M3XGW7_LATCH)

HSP 1 Score: 76.3 bits (186), Expect = 2.420e-15
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   22 QEDVRHCWKCRKDVGLLGFKCQCKYVFCAKHRYGDKHDCPVDYRAREQKKLNKNLENVVGGKVMRI 219
            ++    C+ CRK VGL GF C+C  +FCA HRY DKHDCP DY+A   +K+ K    +V  K+ ++
Sbjct:  146 KQKKNRCFTCRKKVGLTGFDCRCGNLFCAVHRYSDKHDCPYDYKAEAAEKIRKENPIIVAEKIQKL 211          
BLAST of mRNA_M-pyrifera_M_contig100731.163.1 vs. uniprot
Match: H2MPD3_ORYLA (AN1-type zinc finger protein 5 n=5 Tax=Oryzias TaxID=8089 RepID=H2MPD3_ORYLA)

HSP 1 Score: 75.9 bits (185), Expect = 2.440e-15
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 1
Query:    1 EEEPDVLQEDVRHCWKCRKDVGLLGFKCQCKYVFCAKHRYGDKHDCPVDYRAREQKKLNKNLENVVGGKVMRI 219
            E+ PD  ++  R C+ CRK VGL GF C+C  +FCA HRY DKHDCP DYR+    ++ K    VV  K+ ++
Sbjct:  122 EQTPDKNKKKNR-CFSCRKKVGLTGFDCRCGNLFCAIHRYSDKHDCPYDYRSAAAARIRKENPIVVAEKIQKL 193          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100731.163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2ZLU3_9RHOD5.110e-1952.24Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S0G8W7_9RHOD1.110e-1852.24Hypothetical protein n=4 Tax=Rhodosorus marinus Ta... [more]
I3JAM3_ORENI5.140e-1648.57AN1-type domain-containing protein n=5 Tax=Percomo... [more]
A0A3B3UG86_9TELE9.220e-1647.14AN1-type domain-containing protein n=1 Tax=Poecili... [more]
A0A4W4GHM6_ELEEL1.060e-1547.14AN1-type zinc finger protein 5-like n=1 Tax=Electr... [more]
A0A671QAG0_9TELE1.260e-1547.14AN1-type domain-containing protein n=1 Tax=Sinocyc... [more]
A0A8C6MGN9_NOTFU1.300e-1547.95Zgc:77486 n=1 Tax=Nothobranchius furzeri TaxID=105... [more]
A0A1A8UXP5_NOTFU1.910e-1547.95Uncharacterized protein n=9 Tax=Aplocheiloidei Tax... [more]
M3XGW7_LATCH2.420e-1545.45Uncharacterized protein n=2 Tax=Latimeria chalumna... [more]
H2MPD3_ORYLA2.440e-1546.58AN1-type zinc finger protein 5 n=5 Tax=Oryzias Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100731contigM-pyrifera_M_contig100731:7..231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue2.2e-13
Seed eggNOG ortholog5786.XP_003294671.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.A20-like zinc finger
EggNOG OGs3XHNY@554915,KOG3173@1,KOG3173@2759
COG Functional cat.S
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons1
Model size225
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815504.6059358-CDS-M-pyrifera_M_contig100731:6..2311622815504.6059358-CDS-M-pyrifera_M_contig100731:6..231Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100731 7..231 +
1692277441.2865582-CDS-M-pyrifera_M_contig100731:6..2311692277441.2865582-CDS-M-pyrifera_M_contig100731:6..231Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100731 7..231 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100731.163.1prot_M-pyrifera_M_contig100731.163.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100731 7..231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100731.163.1

>prot_M-pyrifera_M_contig100731.163.1 ID=prot_M-pyrifera_M_contig100731.163.1|Name=mRNA_M-pyrifera_M_contig100731.163.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
EEEPDVLQEDVRHCWKCRKDVGLLGFKCQCKYVFCAKHRYGDKHDCPVDY
RAREQKKLNKNLENVVGGKVMRIG*
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mRNA from alignment at M-pyrifera_M_contig100731:7..231+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100731.163.1 ID=mRNA_M-pyrifera_M_contig100731.163.1|Name=mRNA_M-pyrifera_M_contig100731.163.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=225bp|location=Sequence derived from alignment at M-pyrifera_M_contig100731:7..231+ (Macrocystis pyrifera P11B4 male)
GAGGAAGAGCCCGACGTGCTGCAGGAGGACGTGCGGCACTGCTGGAAGTG CAGGAAGGACGTGGGGCTGCTCGGCTTCAAGTGCCAGTGCAAGTATGTGT TTTGCGCCAAGCACCGCTACGGCGACAAGCACGACTGCCCTGTGGACTAC CGCGCGCGCGAGCAGAAGAAGCTCAACAAGAACCTGGAGAATGTCGTCGG TGGCAAGGTGATGCGCATTGGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100731:7..231+

>mRNA_M-pyrifera_M_contig100731.163.1 ID=mRNA_M-pyrifera_M_contig100731.163.1|Name=mRNA_M-pyrifera_M_contig100731.163.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig100731:7..231+ (Macrocystis pyrifera P11B4 male)
GAGGAAGAGCCCGACGTGCTGCAGGAGGACGTGCGGCACTGCTGGAAGTG
CAGGAAGGACGTGGGGCTGCTCGGCTTCAAGTGCCAGTGCAAGTATGTGT
TTTGCGCCAAGCACCGCTACGGCGACAAGCACGACTGCCCTGTGGACTAC
CGCGCGCGCGAGCAGAAGAAGCTCAACAAGAACCTGGAGAATGTCGTCGG
TGGCAAGGTGATGCGCATTGGGTGAGAGGAAGAGCCCGACGTGCTGCAGG
AGGACGTGCGGCACTGCTGGAAGTGCAGGAAGGACGTGGGGCTGCTCGGC
TTCAAGTGCCAGTGCAAGTATGTGTTTTGCGCCAAGCACCGCTACGGCGA
CAAGCACGACTGCCCTGTGGACTACCGCGCGCGCGAGCAGAAGAAGCTCA
ACAAGAACCTGGAGAATGTCGTCGGTGGCAAGGTGATGCGCATTGGGTGA
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