mRNA_M-pyrifera_M_contig675.16299.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig675.16299.1
Unique NamemRNA_M-pyrifera_M_contig675.16299.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig675.16299.1 vs. uniprot
Match: A0A6H5JY04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY04_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 2.950e-53
Identity = 86/127 (67.72%), Postives = 109/127 (85.83%), Query Frame = 1 
Query:   64 RKEPLPVEIQLGSNAVKLTHEGWKLDSRELSKAQGDCQRLEREVQELRQDLEACRAEARESAEHANMAKFQNQLLLDMLAVARADEGNFKARLGQETARHAELSRSLKHAYSKIIEAGLDPGVSDAP 444
            ++ PLP+EIQLGSN+++LT +GWKLDSREL+ AQG+C+RLE+EV  LR+DLE CR +A+  AE  NMA FQNQLL+DMLAVARAD+G F+ +L QE+ARHA LSRSL+ AY+K++ AGLDPGVSDAP
Sbjct:   60 KEPPLPIEIQLGSNSLELTPQGWKLDSRELATAQGECKRLEKEVMGLRRDLENCRKDAKRLAEQENMATFQNQLLIDMLAVARADQGIFRTKLEQESARHAVLSRSLEQAYTKLLAAGLDPGVSDAP 186
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BLAST of mRNA_M-pyrifera_M_contig675.16299.1 vs. uniprot
Match: A0A7S2V5X1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5X1_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.650e-15
Identity = 42/118 (35.59%), Postives = 67/118 (56.78%), Query Frame = 1 
Query:   73 PLPVEIQLGSNAVKLTHEGWKLDSRELSKAQGDCQRLEREVQELRQDLEACRAEARESAEHANMAKFQNQLLLDMLAVARADEGNFKARLGQETARHAELSRSLKHAYSKIIEAGLDP 426
            PLPV I LG N +  T +GWK+D  +  + + + + L+ ++++L+Q       +  ++ E  NMA FQNQLL++M+AVA+ +       L  E  R  E  R L+  Y  I++AGL P
Sbjct:   36 PLPVSISLGDNQLTFTDQGWKIDDSDTKRLEAENESLKLQLEKLKQLCLQGEEDLNQAVEEKNMAVFQNQLLVEMVAVAKVELKTAGEDLEVERRRTLEYRRELERCYQVIVDAGLQP 153
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig675.16299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JY04_9PHAE2.950e-5367.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2V5X1_9STRA3.650e-1535.59Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig675contigM-pyrifera_M_contig675:26743..27999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-21_004460.1
Exons4
Model size447
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig675.16299.1prot_M-pyrifera_M_contig675.16299.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig675 26743..27999 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816565.44324-CDS-M-pyrifera_M_contig675:26742..268921622816565.44324-CDS-M-pyrifera_M_contig675:26742..26892Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig675 26743..26892 -
1692278049.9799557-CDS-M-pyrifera_M_contig675:26742..268921692278049.9799557-CDS-M-pyrifera_M_contig675:26742..26892Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig675 26743..26892 -
1622816565.4547455-CDS-M-pyrifera_M_contig675:27255..274131622816565.4547455-CDS-M-pyrifera_M_contig675:27255..27413Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig675 27256..27413 -
1692278049.9919145-CDS-M-pyrifera_M_contig675:27255..274131692278049.9919145-CDS-M-pyrifera_M_contig675:27255..27413Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig675 27256..27413 -
1622816565.4682693-CDS-M-pyrifera_M_contig675:27618..276951622816565.4682693-CDS-M-pyrifera_M_contig675:27618..27695Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig675 27619..27695 -
1692278050.005963-CDS-M-pyrifera_M_contig675:27618..276951692278050.005963-CDS-M-pyrifera_M_contig675:27618..27695Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig675 27619..27695 -
1622816565.4822047-CDS-M-pyrifera_M_contig675:27937..279991622816565.4822047-CDS-M-pyrifera_M_contig675:27937..27999Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig675 27938..27999 -
1692278050.021517-CDS-M-pyrifera_M_contig675:27937..279991692278050.021517-CDS-M-pyrifera_M_contig675:27937..27999Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig675 27938..27999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig675.16299.1

>prot_M-pyrifera_M_contig675.16299.1 ID=prot_M-pyrifera_M_contig675.16299.1|Name=mRNA_M-pyrifera_M_contig675.16299.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
MAMRFSQLGIGHKPPPHVPNMRKEPLPVEIQLGSNAVKLTHEGWKLDSRE
LSKAQGDCQRLEREVQELRQDLEACRAEARESAEHANMAKFQNQLLLDML
AVARADEGNFKARLGQETARHAELSRSLKHAYSKIIEAGLDPGVSDAP*
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mRNA from alignment at M-pyrifera_M_contig675:26743..27999-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig675.16299.1 ID=mRNA_M-pyrifera_M_contig675.16299.1|Name=mRNA_M-pyrifera_M_contig675.16299.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1257bp|location=Sequence derived from alignment at M-pyrifera_M_contig675:26743..27999- (Macrocystis pyrifera P11B4 male)
ATGGCGATGCGCTTTTCCCAACTGGGTATTGGTCACAAACCGCCACCTCA
CGTGCCAAATATGTGAGTTTAAGATTCCGAGCGGGTTGTATGATCCTGCA
TCTGTCTGTGGTTTGTTGCGAAAACAGTGCTCGTAGTTTAACGAAGAGCT
TCGTCTTATTCGCGAGTTGAAAGTGTAGCTTTGTATCTTCTCGGCATACG
CAGTGGTTCCACGGTGTGGTTCTCCCCTGCGGTAGATGCGGAGGTGCGAT
TTCTCTGCCAAAACTGACGATCCCAGCTCTTCTTTGTAAATATTTTTGCT
GCAGGAGGAAAGAGCCACTACCGGTCGAAATCCAGCTTGGATCTAACGCA
GTGAAGCTCACGCATGAAGGCTGGAAGCTTGGTGAGTGTCCGTTCTTCTT
GCGTTGATCTGTCCAGGGGATATAAGTGGGAACGGCACTGGAGGGAGTTG
AGGCAGCAGAGTTCAACAACAGCAGTGTGTCTATCTTATTTACAGTAGCT
GTATGATATCCCACAAACCATTTTAAACTGCAAACGCATCGGGCACGCCG
ACAACCGACGCGTCGTATGATGCATGAACCTGCCAGATTCTCGAGAGCTC
TCGAAAGCTCAAGGAGATTGCCAGCGACTAGAACGAGAGGTACAGGAGCT
CCGACAAGATCTAGAGGCCTGCCGGGCAGAAGCGAGGGAGTCTGCCGAGC
ACGCAAACATGGCCAAGTTTCAAAACCAGCTGCTGCTTGATATGGTACGG
TCGAGCAAGCACCTACTGCGCGAATATCAGCCCTGCTATCTTGAGCATCA
CTATGAACGCAAGAATCGACAGGATCAATGGCAATCTCGGGTGTTCTACG
TGAGAGTATCTAGAGAGACTTTAGTTGCCGCCAACCACTAGTTCTTTGTT
TGCAGCACATTAGGTGTCGCCAAACGCCACGGTCACGTTTATATCGGTCT
TCAAGTTTTCGTTCCCGTCCCCTCCATGTTCGACGGCGCTTTTCGGGGCA
AATATGGCAGTCGGGCCGAAGAAGAGCATCCCCTTGTTCGATGCACCTCT
CTTTAAACTCCTTCCCACCATTTTGTTTTATCGACAACCCCTTTCTTGTG
CCATCAGCTGGCCGTTGCGCGAGCGGACGAGGGAAACTTCAAGGCCAGAT
TGGGGCAGGAGACTGCCCGACATGCGGAGCTTAGTCGGAGTCTGAAGCAC
GCGTACAGCAAGATCATTGAGGCGGGGCTGGATCCAGGAGTGTCAGATGC
ACCTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig675:26743..27999-

>mRNA_M-pyrifera_M_contig675.16299.1 ID=mRNA_M-pyrifera_M_contig675.16299.1|Name=mRNA_M-pyrifera_M_contig675.16299.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig675:26743..27999- (Macrocystis pyrifera P11B4 male)
ATGGCGATGCGCTTTTCCCAACTGGGTATTGGTCACAAACCGCCACCTCA
CGTGCCAAATATATGGCGATGCGCTTTTCCCAACTGGGTATTGGTCACAA
ACCGCCACCTCACGTGCCAAATATGAGGAAAGAGCCACTACCGGTCGAAA
TCCAGCTTGGATCTAACGCAGTGAAGCTCACGCATGAAGGCTGGAAGCTT
GGAGGAAAGAGCCACTACCGGTCGAAATCCAGCTTGGATCTAACGCAGTG
AAGCTCACGCATGAAGGCTGGAAGCTTGATTCTCGAGAGCTCTCGAAAGC
TCAAGGAGATTGCCAGCGACTAGAACGAGAGGTACAGGAGCTCCGACAAG
ATCTAGAGGCCTGCCGGGCAGAAGCGAGGGAGTCTGCCGAGCACGCAAAC
ATGGCCAAGTTTCAAAACCAGCTGCTGCTTGATATGATTCTCGAGAGCTC
TCGAAAGCTCAAGGAGATTGCCAGCGACTAGAACGAGAGGTACAGGAGCT
CCGACAAGATCTAGAGGCCTGCCGGGCAGAAGCGAGGGAGTCTGCCGAGC
ACGCAAACATGGCCAAGTTTCAAAACCAGCTGCTGCTTGATATGCTGGCC
GTTGCGCGAGCGGACGAGGGAAACTTCAAGGCCAGATTGGGGCAGGAGAC
TGCCCGACATGCGGAGCTTAGTCGGAGTCTGAAGCACGCGTACAGCAAGA
TCATTGAGGCGGGGCTGGATCCAGGAGTGTCAGATGCACCTTGACTGGCC
GTTGCGCGAGCGGACGAGGGAAACTTCAAGGCCAGATTGGGGCAGGAGAC
TGCCCGACATGCGGAGCTTAGTCGGAGTCTGAAGCACGCGTACAGCAAGA
TCATTGAGGCGGGGCTGGATCCAGGAGTGTCAGATGCACCTTGA
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