mRNA_M-pyrifera_M_contig67446.16290.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67446.16290.1
Unique NamemRNA_M-pyrifera_M_contig67446.16290.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig67446.16290.1 vs. uniprot
Match: D8LSC3_ECTSI (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC3_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.490e-11
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 QESIVEMRRRLLARRFVKALTQGQSSVRPIEMQAHDPVR 117
            QESIV MRR+LL +RFV ALT GQSSVRPIEMQAHDPVR
Sbjct:  262 QESIVNMRRKLLVQRFVMALTSGQSSVRPIEMQAHDPVR 300
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67446.16290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSC3_ECTSI1.490e-1184.62Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67446contigM-pyrifera_M_contig67446:627..746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size102
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816564.8661687-UTR-M-pyrifera_M_contig67446:626..6441622816564.8661687-UTR-M-pyrifera_M_contig67446:626..644Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig67446 627..644 +
1692278049.6242115-UTR-M-pyrifera_M_contig67446:626..6441692278049.6242115-UTR-M-pyrifera_M_contig67446:626..644Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig67446 627..644 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816564.8772109-CDS-M-pyrifera_M_contig67446:644..7461622816564.8772109-CDS-M-pyrifera_M_contig67446:644..746Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67446 645..746 +
1692278049.634701-CDS-M-pyrifera_M_contig67446:644..7461692278049.634701-CDS-M-pyrifera_M_contig67446:644..746Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67446 645..746 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67446.16290.1prot_M-pyrifera_M_contig67446.16290.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67446 645..746 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67446.16290.1

>prot_M-pyrifera_M_contig67446.16290.1 ID=prot_M-pyrifera_M_contig67446.16290.1|Name=mRNA_M-pyrifera_M_contig67446.16290.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=34bp
MRRRLLARRFVKALTQGQSSVRPIEMQAHDPVR*
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mRNA from alignment at M-pyrifera_M_contig67446:627..746+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67446.16290.1 ID=mRNA_M-pyrifera_M_contig67446.16290.1|Name=mRNA_M-pyrifera_M_contig67446.16290.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=120bp|location=Sequence derived from alignment at M-pyrifera_M_contig67446:627..746+ (Macrocystis pyrifera P11B4 male)
CAGGAGAGCATCGTGGAAATGCGGCGCAGGCTGTTGGCGCGAAGGTTCGT
GAAGGCTCTGACGCAGGGGCAGTCTTCGGTGCGTCCGATCGAGATGCAGG
CGCACGACCCCGTCCGGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67446:627..746+

>mRNA_M-pyrifera_M_contig67446.16290.1 ID=mRNA_M-pyrifera_M_contig67446.16290.1|Name=mRNA_M-pyrifera_M_contig67446.16290.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig67446:627..746+ (Macrocystis pyrifera P11B4 male)
ATGCGGCGCAGGCTGTTGGCGCGAAGGTTCGTGAAGGCTCTGACGCAGGG
GCAGTCTTCGGTGCGTCCGATCGAGATGCAGGCGCACGACCCCGTCCGGT
AAATGCGGCGCAGGCTGTTGGCGCGAAGGTTCGTGAAGGCTCTGACGCAG
GGGCAGTCTTCGGTGCGTCCGATCGAGATGCAGGCGCACGACCCCGTCCG
GTAA
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