mRNA_M-pyrifera_M_contig67357.16275.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67357.16275.1
Unique NamemRNA_M-pyrifera_M_contig67357.16275.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig67357.16275.1 vs. uniprot
Match: Q4E2K6_TRYCC (EF-hand domain-containing protein n=7 Tax=Trypanosoma cruzi TaxID=5693 RepID=Q4E2K6_TRYCC)

HSP 1 Score: 99.0 bits (245), Expect = 7.790e-22
Identity = 48/107 (44.86%), Postives = 75/107 (70.09%), Query Frame = 1
Query:   16 QISLRGKGIKDIAPLLSLLSRFQRLKSLDLSNNGLTGLPSDMSSLSRLETLNLTSNKVAVATAILHGLQSLPALRHVWVNLPDEEQEDELVVGLPKLHSLNGVHLDE 336
            +++L G G++ + P+L LLSR  RLK+L L+ N LTGLP+D++ + +LE L+L++N +  A+ I+ GL  L  LRH++V+LP E +EDE++V +  L S NG  L E
Sbjct:   18 EVNLEGVGLESLEPVLPLLSRLPRLKALRLARNKLTGLPNDLTGICQLEYLDLSANPITGASTIMQGLSGLAILRHLYVDLPCESEEDEVIVAVQSLESFNGTSLTE 124          
BLAST of mRNA_M-pyrifera_M_contig67357.16275.1 vs. uniprot
Match: A0A0S4J4H6_BODSA (Calcium-binding protein, putative n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4J4H6_BODSA)

HSP 1 Score: 97.1 bits (240), Expect = 3.680e-21
Identity = 51/105 (48.57%), Postives = 71/105 (67.62%), Query Frame = 1
Query:   22 SLRGKGIKDIAPLLSLLSRFQRLKSLDLSNNGLTGLPSDMSSLSRLETLNLTSNKVAVATAILHGLQSLPALRHVWVNLPDEEQEDELVVGLPKLHSLNGVHLDE 336
            +L G G+  IAPLL L ++  RL+ L LS N LT LP D+S+L  LE+L+LT N +A  ++IL GLQ +P L+H+ V+LP E +EDE++V L  L S NG  L +
Sbjct:   20 NLEGLGLTTIAPLLPLFAQMTRLRRLRLSRNALTSLPEDLSALRNLESLDLTGNPIAGLSSILSGLQCIPNLKHLNVDLPFESEEDEVIVTLSSLESFNGTSLTD 124          
BLAST of mRNA_M-pyrifera_M_contig67357.16275.1 vs. uniprot
Match: A0A3R7KSG2_TRYRA (Putative structural maintenance of chromosome (SMC) family protein n=1 Tax=Trypanosoma rangeli TaxID=5698 RepID=A0A3R7KSG2_TRYRA)

HSP 1 Score: 93.6 bits (231), Expect = 6.040e-20
Identity = 46/107 (42.99%), Postives = 73/107 (68.22%), Query Frame = 1
Query:   16 QISLRGKGIKDIAPLLSLLSRFQRLKSLDLSNNGLTGLPSDMSSLSRLETLNLTSNKVAVATAILHGLQSLPALRHVWVNLPDEEQEDELVVGLPKLHSLNGVHLDE 336
            Q++L G  ++ + P+L LLSR  RLK+L L+ N LTGLPSD+S + +LE L++++N +   + I+ GL +L  L+H++V+LP E +EDE++V L  L   NG  L +
Sbjct:   18 QVNLEGLELESLEPVLPLLSRMPRLKALRLARNKLTGLPSDLSGIRQLEYLDISANPITGVSTIMRGLYTLVILKHLYVDLPYESEEDEIIVALHSLERFNGTSLTD 124          
BLAST of mRNA_M-pyrifera_M_contig67357.16275.1 vs. uniprot
Match: UPI0004F3F02E (putative structural maintenance of chromosome (SMC) family protein n=1 Tax=Trypanosoma grayi TaxID=71804 RepID=UPI0004F3F02E)

HSP 1 Score: 92.4 bits (228), Expect = 1.540e-19
Identity = 46/105 (43.81%), Postives = 72/105 (68.57%), Query Frame = 1
Query:   16 QISLRGKGIKDIAPLLSLLSRFQRLKSLDLSNNGLTGLPSDMSSLSRLETLNLTSNKVAVATAILHGLQSLPALRHVWVNLPDEEQEDELVVGLPKLHSLNGVHL 330
            +++L   G+  + P+L LL+   RLK+L L++N LTGLP D+SS+ +LE L++++N +   + I+ GL SL  LRH++V+LP E +EDE++V L  L S NG  L
Sbjct:   18 EVNLESLGLDSLEPVLPLLANMPRLKALKLAHNKLTGLPCDLSSIRQLEYLDISANPITGLSTIVRGLYSLVILRHLYVDLPFENEEDEVIVSLHSLQSFNGTSL 122          
BLAST of mRNA_M-pyrifera_M_contig67357.16275.1 vs. uniprot
Match: A0A1X0NY28_9TRYP (Putative structural maintenance of chromosome (SMC) family protein n=1 Tax=Trypanosoma theileri TaxID=67003 RepID=A0A1X0NY28_9TRYP)

HSP 1 Score: 84.0 bits (206), Expect = 1.430e-16
Identity = 43/106 (40.57%), Postives = 67/106 (63.21%), Query Frame = 1
Query:   19 ISLRGKGIKDIAPLLSLLSRFQRLKSLDLSNNGLTGLPSDMSSLSRLETLNLTSNKVAVATAILHGLQSLPALRHVWVNLPDEEQEDELVVGLPKLHSLNGVHLDE 336
            + L G G+  + PL  LL+   RLKSL L+ N LT LP+D+S + +LE L+++ N +    +I+ GL +L  L+H++V+L  E +EDE+++ L  L S NG  L E
Sbjct:   19 VDLSGLGLDTLLPLFPLLAVMPRLKSLKLARNKLTSLPNDLSVIRQLEYLDISENPINGLDSIMSGLSTLVVLKHLYVDLSYESEEDEIIISLQSLESFNGTSLTE 124          
BLAST of mRNA_M-pyrifera_M_contig67357.16275.1 vs. uniprot
Match: A0A640KHZ7_LEITA (EF-hand domain-containing protein n=1 Tax=Leishmania tarentolae TaxID=5689 RepID=A0A640KHZ7_LEITA)

HSP 1 Score: 82.8 bits (203), Expect = 3.630e-16
Identity = 48/106 (45.28%), Postives = 71/106 (66.98%), Query Frame = 1
Query:   16 QISLRGKGIKDIAPLLSLLSRFQRLKSLDLSNNGLTGLPSDMSSLSRLETLNLTSNKVAVATAILHGLQSLPALRHVWVNLPDE-EQEDELVVGLPKLHSLNGVHL 330
            ++SL G  +  +  L+ LL++  RL+SL++S+N L  LP D+SSLS+LETL+L+SN +     IL GLQSLP L  + V LP+   +E++L++ LP L  LNG  L
Sbjct:   18 ELSLSGMRLTSLDALVPLLAKMPRLRSLNVSHNELRDLPIDLSSLSQLETLDLSSNPLGGVQRILDGLQSLPQLTSLSVTLPEPVAEEEQLIMRLPSLSCLNGTTL 123          
BLAST of mRNA_M-pyrifera_M_contig67357.16275.1 vs. uniprot
Match: D2VR29_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VR29_NAEGR)

HSP 1 Score: 82.8 bits (203), Expect = 3.650e-16
Identity = 47/107 (43.93%), Postives = 70/107 (65.42%), Query Frame = 1
Query:   16 QISLRGKGIKDIAPLLSLLSRFQRLKSLDLSNNGLTGLPSDMSSLSRLETLNLTSNKVAVATAILHGLQSLPALRHVWVNLPDEEQEDELVVGLPKLHSLNGVHLDE 336
            ++SL   G+K +  +L  LS+ + LK L L+NN L  LPSDMS L R+E L+L +N    +  +L GL SLP+L+H+++ L DE++EDE++V L  L S NG  L +
Sbjct:   16 EVSLEHCGLKTLDEILVDLSKLRYLKVLRLANNQLRYLPSDMSGLQRVEYLDLRNNNFNSSQNVLSGLFSLPSLKHLYITL-DEQEEDEIIVSLSNLESFNGTPLTD 121          
BLAST of mRNA_M-pyrifera_M_contig67357.16275.1 vs. uniprot
Match: A0A836HP72_9TRYP (EF-hand domain-containing protein n=4 Tax=Mundinia TaxID=2249475 RepID=A0A836HP72_9TRYP)

HSP 1 Score: 81.6 bits (200), Expect = 9.220e-16
Identity = 50/107 (46.73%), Postives = 70/107 (65.42%), Query Frame = 1
Query:   16 QISLRGKGIKDIAPLLSLLSRFQRLKSLDLSNNGLTGLPSDMSSLSRLETLNLTSNKVAVATAILHGLQSLPALRHVWVNLPD--EEQEDELVVGLPKLHSLNGVHL 330
            ++SL G  +  +  L+ LL+R  RL+ L+LS+N L  LP+D+S+LSRLETL+L+ N       IL GLQSLP L  + V+LP   EE E++L++ LP L  LNG  L
Sbjct:   18 ELSLSGMRLTSLDVLVPLLARMPRLRCLNLSHNELRDLPTDLSALSRLETLDLSFNPFGGVYHILDGLQSLPRLASLSVSLPAPVEEAEEQLIMRLPALACLNGTTL 124          
BLAST of mRNA_M-pyrifera_M_contig67357.16275.1 vs. uniprot
Match: E9BHZ5_LEIDB (EF-hand domain-containing protein n=9 Tax=Leishmania TaxID=38568 RepID=E9BHZ5_LEIDB)

HSP 1 Score: 76.6 bits (187), Expect = 5.250e-14
Identity = 46/107 (42.99%), Postives = 68/107 (63.55%), Query Frame = 1
Query:   16 QISLRGKGIKDIAPLLSLLSRFQRLKSLDLSNNGLTGLPSDMSSLSRLETLNLTSNKVAVATAILHGLQSLPALRHVWVNLPDE--EQEDELVVGLPKLHSLNGVHL 330
            ++SL G  +  +  L+ LL++  RL+ L++S+N L  LP D+SSL++LE L+L+SN +     IL GLQSLP L  + V LP    E E++L++ LP L  LNG  L
Sbjct:   18 ELSLSGMRLTSLDALVPLLAKMPRLRCLNVSHNELRDLPMDLSSLTKLEALDLSSNPLGGVHRILDGLQSLPRLTSLSVTLPAPAAEAEEQLIMRLPALTCLNGTAL 124          
BLAST of mRNA_M-pyrifera_M_contig67357.16275.1 vs. uniprot
Match: A0A078AF96_STYLE (EF-hand domain-containing protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AF96_STYLE)

HSP 1 Score: 74.3 bits (181), Expect = 3.470e-13
Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = 1
Query:   19 ISLRGKGIKDIAPLLSLLSRFQRLKSLDLSNNGLTGLPSDMSSLSRLETLNLTSNKVAVATAILHGLQSLPALRHVWVNLPDEEQEDELVVGLPKLHSLNGVHLD 333
            I L G+ I+D   +   L +F  LK L+LS+N LTGLPSD+S L +L  LNL  N        ++ L++LP L  +++NL  E+Q D ++  L  L  LNG+ ++
Sbjct:   20 IDLSGQDIQDFQEIYEHLVKFHNLKELNLSDNELTGLPSDLSGLQQLSNLNLNGNSFEDFKQTVYALKTLPQLSSLFINLHQEDQVDLIMRSLSDLEFLNGLKVE 124          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67357.16275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
Q4E2K6_TRYCC7.790e-2244.86EF-hand domain-containing protein n=7 Tax=Trypanos... [more]
A0A0S4J4H6_BODSA3.680e-2148.57Calcium-binding protein, putative n=1 Tax=Bodo sal... [more]
A0A3R7KSG2_TRYRA6.040e-2042.99Putative structural maintenance of chromosome (SMC... [more]
UPI0004F3F02E1.540e-1943.81putative structural maintenance of chromosome (SMC... [more]
A0A1X0NY28_9TRYP1.430e-1640.57Putative structural maintenance of chromosome (SMC... [more]
A0A640KHZ7_LEITA3.630e-1645.28EF-hand domain-containing protein n=1 Tax=Leishman... [more]
D2VR29_NAEGR3.650e-1643.93Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
A0A836HP72_9TRYP9.220e-1646.73EF-hand domain-containing protein n=4 Tax=Mundinia... [more]
E9BHZ5_LEIDB5.250e-1442.99EF-hand domain-containing protein n=9 Tax=Leishman... [more]
A0A078AF96_STYLE3.470e-1339.05EF-hand domain-containing protein n=1 Tax=Stylonyc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67357contigM-pyrifera_M_contig67357:3..564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue1.5e-18
Seed eggNOG ortholog5693.XP_820855.1
Hectar predicted targeting categoryother localisation
EggNOG OGs28P70@1,2QVTY@2759,3XSBK@5653
Best tax levelKinetoplastida
Best eggNOG OGNA|NA|NA
Exons2
Model size336
Cds size336
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816563.754177-CDS-M-pyrifera_M_contig67357:2..2461622816563.754177-CDS-M-pyrifera_M_contig67357:2..246Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67357 3..246 -
1692278048.9126508-CDS-M-pyrifera_M_contig67357:2..2461692278048.9126508-CDS-M-pyrifera_M_contig67357:2..246Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67357 3..246 -
1622816563.7697988-CDS-M-pyrifera_M_contig67357:472..5641622816563.7697988-CDS-M-pyrifera_M_contig67357:472..564Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67357 473..564 -
1692278048.9308317-CDS-M-pyrifera_M_contig67357:472..5641692278048.9308317-CDS-M-pyrifera_M_contig67357:472..564Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67357 473..564 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67357.16275.1prot_M-pyrifera_M_contig67357.16275.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67357 3..564 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67357.16275.1

>prot_M-pyrifera_M_contig67357.16275.1 ID=prot_M-pyrifera_M_contig67357.16275.1|Name=mRNA_M-pyrifera_M_contig67357.16275.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
MVCILQISLRGKGIKDIAPLLSLLSRFQRLKSLDLSNNGLTGLPSDMSSL
SRLETLNLTSNKVAVATAILHGLQSLPALRHVWVNLPDEEQEDELVVGLP
KLHSLNGVHLDE
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mRNA from alignment at M-pyrifera_M_contig67357:3..564-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67357.16275.1 ID=mRNA_M-pyrifera_M_contig67357.16275.1|Name=mRNA_M-pyrifera_M_contig67357.16275.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=562bp|location=Sequence derived from alignment at M-pyrifera_M_contig67357:3..564- (Macrocystis pyrifera P11B4 male)
ATGGTGTGTATTTTGCAGATTTCTCTTCGGGGCAAAGGAATCAAAGACAT TGCACCACTTCTCAGCCTCTTGTCAAGGTTCCAAAGACTCAAGTAAGTTG ATTTTTTTGCCTTTTTCTTGTTGCATCGTGGGTTGGAGCCATGATTTTCT TCATCGCATTTCGCGTATATGAGGAATGGTGCTGGGTGTTGGGAGGGTAG GATGGAGAAGAGTATGGGGGATGTGGGGTTGTGGGTGTTGGGGTGCGAGG AGGTGGTGATTGAGAGGGGTTTGGGGTGTTGAGGGTTGGATTGGGGAGTA TATTGCGTTGGTTTGCAGATCATTGGATCTCTCAAACAATGGCTTGACTG GTCTGCCTAGTGACATGTCTTCCTTGTCACGATTAGAGACGTTAAACCTC ACAAGCAACAAGGTAGCAGTTGCAACCGCAATTTTGCACGGGTTGCAATC ACTTCCAGCATTGCGTCATGTCTGGGTGAATCTTCCAGATGAAGAACAAG AAGATGAGTTGGTAGTAGGGTTGCCAAAGTTGCACAGTTTGAACGGAGTA CACTTGGATGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67357:3..564-

>mRNA_M-pyrifera_M_contig67357.16275.1 ID=mRNA_M-pyrifera_M_contig67357.16275.1|Name=mRNA_M-pyrifera_M_contig67357.16275.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig67357:3..564- (Macrocystis pyrifera P11B4 male)
ATGGTGTGTATTTTGCAGATTTCTCTTCGGGGCAAAGGAATCAAAGACAT
TGCACCACTTCTCAGCCTCTTGTCAAGGTTCCAAAGACTCAAATGGTGTG
TATTTTGCAGATTTCTCTTCGGGGCAAAGGAATCAAAGACATTGCACCAC
TTCTCAGCCTCTTGTCAAGGTTCCAAAGACTCAAATCATTGGATCTCTCA
AACAATGGCTTGACTGGTCTGCCTAGTGACATGTCTTCCTTGTCACGATT
AGAGACGTTAAACCTCACAAGCAACAAGGTAGCAGTTGCAACCGCAATTT
TGCACGGGTTGCAATCACTTCCAGCATTGCGTCATGTCTGGGTGAATCTT
CCAGATGAAGAACAAGAAGATGAGTTGGTAGTAGGGTTGCCAAAGTTGCA
CAGTTTGAACGGAGTACACTTGGATGAAATCATTGGATCTCTCAAACAAT
GGCTTGACTGGTCTGCCTAGTGACATGTCTTCCTTGTCACGATTAGAGAC
GTTAAACCTCACAAGCAACAAGGTAGCAGTTGCAACCGCAATTTTGCACG
GGTTGCAATCACTTCCAGCATTGCGTCATGTCTGGGTGAATCTTCCAGAT
GAAGAACAAGAAGATGAGTTGGTAGTAGGGTTGCCAAAGTTGCACAGTTT
GAACGGAGTACACTTGGATGAA
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