mRNA_M-pyrifera_M_contig67349.16272.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67349.16272.1
Unique NamemRNA_M-pyrifera_M_contig67349.16272.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig67349.16272.1 vs. uniprot
Match: D7G359_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G359_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 9.500e-17
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 PELLVLAAEAAVKNGEFDTAREVCHDFFLDGG-ARDQFYCRALFIKVKI 144
            PELLVLAAE AVKNGEF+ ARE CH+FFLDGG ARDQF+CRALF+K  +
Sbjct:   68 PELLVLAAETAVKNGEFNLAREACHEFFLDGGGARDQFFCRALFVKALV 116
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BLAST of mRNA_M-pyrifera_M_contig67349.16272.1 vs. uniprot
Match: A0A6H5JKR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKR4_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.290e-16
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 PELLVLAAEAAVKNGEFDTAREVCHDFFLDGG-ARDQFYCRALFIKV 138
            PELLVLAAE AVKNGEF+ AR+ CH+FFLDGG ARDQF+CRALF+KV
Sbjct:   68 PELLVLAAETAVKNGEFNLARKACHEFFLDGGGARDQFFCRALFVKV 114
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BLAST of mRNA_M-pyrifera_M_contig67349.16272.1 vs. uniprot
Match: G4ZEW1_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZEW1_PHYSP)

HSP 1 Score: 53.9 bits (128), Expect = 5.600e-7
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 PELLVLAAEAAVKNGEFDTAREVCHDFFLDGGARDQFYCRALFIKVK 141
            PELLVL AEAA+  G+FDTA E    FF +   ++QFYCRA F++ +
Sbjct:   62 PELLVLTAEAAIFQGDFDTASESVEWFFSECQLKNQFYCRAQFVRAQ 108
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BLAST of mRNA_M-pyrifera_M_contig67349.16272.1 vs. uniprot
Match: W2R6I9_PHYPN (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2R6I9_PHYPN)

HSP 1 Score: 52.4 bits (124), Expect = 1.960e-6
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    1 PELLVLAAEAAVKNGEFDTAREVCHDFFLDGGARDQFYCRALFIKV 138
            PELLVL AEAAV  G+FDTA      FF +   ++QFYCRA F++ 
Sbjct:   58 PELLVLTAEAAVLQGDFDTASRSIDWFFSECQVKNQFYCRAQFVRA 103
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BLAST of mRNA_M-pyrifera_M_contig67349.16272.1 vs. uniprot
Match: A0A329RV81_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RV81_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 3.670e-6
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    1 PELLVLAAEAAVKNGEFDTAREVCHDFFLDGGARDQFYCRALFIKV 138
            PELLVL AEAAV  G+FDTA +    FF +   + QFYCRA F++ 
Sbjct:   59 PELLVLTAEAAVFQGDFDTASKSIEWFFSECQLKHQFYCRAQFVRA 104
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BLAST of mRNA_M-pyrifera_M_contig67349.16272.1 vs. uniprot
Match: D0NV30_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NV30_PHYIT)

HSP 1 Score: 49.7 bits (117), Expect = 1.760e-5
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    1 PELLVLAAEAAVKNGEFDTAREVCHDFFLDGGARDQFYCRALFIKV 138
            PELLVL AEAAV  G+F TA +    FF +   ++QFYCRA F++ 
Sbjct:   66 PELLVLTAEAAVLQGDFHTALKSIEWFFSECQLKNQFYCRAQFVRA 111
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BLAST of mRNA_M-pyrifera_M_contig67349.16272.1 vs. uniprot
Match: H3H6N2_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H6N2_PHYRM)

HSP 1 Score: 49.3 bits (116), Expect = 2.360e-5
Identity = 23/46 (50.00%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:    1 PELLVLAAEAAVKNGEFDTAREVCHDFFLDGGARDQFYCRALFIKV 138
            PELLVL AEAA+   +FD A E    FF +   ++QFYCRA F++ 
Sbjct:   59 PELLVLTAEAAIFQADFDAASESVEWFFSECQLKNQFYCRAQFVRA 104
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BLAST of mRNA_M-pyrifera_M_contig67349.16272.1 vs. uniprot
Match: A0A2P4X442_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X442_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 3.300e-5
Identity = 22/46 (47.83%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    1 PELLVLAAEAAVKNGEFDTAREVCHDFFLDGGARDQFYCRALFIKV 138
            PELLVL AE A+  G+F+TA +    FF +   ++QFYCRA F++ 
Sbjct:   62 PELLVLTAEVAIFQGDFETASKSVEWFFSECQLKNQFYCRAQFVRA 107
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BLAST of mRNA_M-pyrifera_M_contig67349.16272.1 vs. uniprot
Match: A0A225WJE9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WJE9_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 4.520e-5
Identity = 22/46 (47.83%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:    1 PELLVLAAEAAVKNGEFDTAREVCHDFFLDGGARDQFYCRALFIKV 138
            PELLVL AE A+  G+F+TA      FF +   ++QFYCRA F++ 
Sbjct:   62 PELLVLTAEVAIFQGDFETASNSVEWFFSECQLKNQFYCRAQFVRA 107
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BLAST of mRNA_M-pyrifera_M_contig67349.16272.1 vs. uniprot
Match: A0A6A3X2J5_9STRA (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3X2J5_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 4.520e-5
Identity = 22/46 (47.83%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:    1 PELLVLAAEAAVKNGEFDTAREVCHDFFLDGGARDQFYCRALFIKV 138
            PELLVL AE A+  G+F+ A E    FF +   ++QFYCRA F++ 
Sbjct:   62 PELLVLTAETAIFQGDFEAASESVEWFFSECQLKNQFYCRAQFVRA 107
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67349.16272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7G359_ECTSI9.500e-1777.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKR4_9PHAE1.290e-1680.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
G4ZEW1_PHYSP5.600e-753.19Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
W2R6I9_PHYPN1.960e-654.35Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
A0A329RV81_9STRA3.670e-654.35Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
D0NV30_PHYIT1.760e-552.17Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
H3H6N2_PHYRM2.360e-550.00Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A2P4X442_9STRA3.300e-547.83Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A225WJE9_9STRA4.520e-547.83Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A6A3X2J5_9STRA4.520e-547.83Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67349contigM-pyrifera_M_contig67349:459..623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue9.4e-14
Seed eggNOG ortholog2880.D7G359
Preferred nameCFAP46
KEGG koko:K18626
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0035082,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.cilium movement involved in cell motility
EggNOG OGs2C6EK@1,2QS2Z@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816563.6352363-CDS-M-pyrifera_M_contig67349:458..6231622816563.6352363-CDS-M-pyrifera_M_contig67349:458..623Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67349 459..623 +
1692278048.8768778-CDS-M-pyrifera_M_contig67349:458..6231692278048.8768778-CDS-M-pyrifera_M_contig67349:458..623Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67349 459..623 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67349.16272.1prot_M-pyrifera_M_contig67349.16272.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67349 459..623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67349.16272.1

>prot_M-pyrifera_M_contig67349.16272.1 ID=prot_M-pyrifera_M_contig67349.16272.1|Name=mRNA_M-pyrifera_M_contig67349.16272.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
PELLVLAAEAAVKNGEFDTAREVCHDFFLDGGARDQFYCRALFIKVKIKR
GLRW*
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mRNA from alignment at M-pyrifera_M_contig67349:459..623+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67349.16272.1 ID=mRNA_M-pyrifera_M_contig67349.16272.1|Name=mRNA_M-pyrifera_M_contig67349.16272.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=165bp|location=Sequence derived from alignment at M-pyrifera_M_contig67349:459..623+ (Macrocystis pyrifera P11B4 male)
CCCGAGCTGCTGGTGCTTGCGGCCGAAGCTGCGGTCAAAAATGGGGAGTT
CGATACCGCACGGGAGGTCTGTCACGATTTCTTTCTCGACGGGGGGGCGC
GAGACCAGTTCTACTGCCGGGCTTTGTTCATTAAGGTAAAAATCAAGCGG
GGATTAAGATGGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67349:459..623+

>mRNA_M-pyrifera_M_contig67349.16272.1 ID=mRNA_M-pyrifera_M_contig67349.16272.1|Name=mRNA_M-pyrifera_M_contig67349.16272.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig67349:459..623+ (Macrocystis pyrifera P11B4 male)
CCCGAGCTGCTGGTGCTTGCGGCCGAAGCTGCGGTCAAAAATGGGGAGTT
CGATACCGCACGGGAGGTCTGTCACGATTTCTTTCTCGACGGGGGGGCGC
GAGACCAGTTCTACTGCCGGGCTTTGTTCATTAAGGTAAAAATCAAGCGG
GGATTAAGATGGTAACCCGAGCTGCTGGTGCTTGCGGCCGAAGCTGCGGT
CAAAAATGGGGAGTTCGATACCGCACGGGAGGTCTGTCACGATTTCTTTC
TCGACGGGGGGGCGCGAGACCAGTTCTACTGCCGGGCTTTGTTCATTAAG
GTAAAAATCAAGCGGGGATTAAGATGGTAA
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