mRNA_M-pyrifera_M_contig67330.16271.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67330.16271.1
Unique NamemRNA_M-pyrifera_M_contig67330.16271.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig67330.16271.1 vs. uniprot
Match: A0A1Y2F7J1_PROLT (Nuclear protein Es2-domain-containing protein n=1 Tax=Protomyces lactucae-debilis TaxID=2754530 RepID=A0A1Y2F7J1_PROLT)

HSP 1 Score: 50.1 bits (118), Expect = 8.820e-5
Identity = 30/111 (27.03%), Postives = 55/111 (49.55%), Query Frame = 1 
Query:    7 VVEDDLFLECLQHIVQRDFFPGVEGSGRGEV------GGVAEVLAGFRLPDADPVSDASLAAGGRVAEEVVRRGVSLDLFLSKFCSEDDFEAQQLLRSDVREHRERHWWAY 321
            V+++D++++ L HI++RDFFPG+E     ++      G +       R P          A G   +++     +SLD F +++ SED+   Q++L       RE++ W Y
Sbjct:   30 VLDEDIYVDSLSHIIKRDFFPGLETHSSSQIEDSRHSGSIRPSSTRMRTPHFAQEVTTDEAPGN--SDKRPASSLSLDRFQARYTSEDNASFQEILDEGNLARREKYSWLY 138
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67330.16271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1Y2F7J1_PROLT8.820e-527.03Nuclear protein Es2-domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67330contigM-pyrifera_M_contig67330:281..604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816563.6001036-CDS-M-pyrifera_M_contig67330:280..6041622816563.6001036-CDS-M-pyrifera_M_contig67330:280..604Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67330 281..604 +
1692278048.865753-CDS-M-pyrifera_M_contig67330:280..6041692278048.865753-CDS-M-pyrifera_M_contig67330:280..604Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67330 281..604 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67330.16271.1prot_M-pyrifera_M_contig67330.16271.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67330 281..604 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67330.16271.1

>prot_M-pyrifera_M_contig67330.16271.1 ID=prot_M-pyrifera_M_contig67330.16271.1|Name=mRNA_M-pyrifera_M_contig67330.16271.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
RIVVEDDLFLECLQHIVQRDFFPGVEGSGRGEVGGVAEVLAGFRLPDADP
VSDASLAAGGRVAEEVVRRGVSLDLFLSKFCSEDDFEAQQLLRSDVREHR
ERHWWAYE
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mRNA from alignment at M-pyrifera_M_contig67330:281..604+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67330.16271.1 ID=mRNA_M-pyrifera_M_contig67330.16271.1|Name=mRNA_M-pyrifera_M_contig67330.16271.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig67330:281..604+ (Macrocystis pyrifera P11B4 male)
CGTATTGTGGTGGAAGACGACTTGTTTCTGGAGTGTTTGCAACATATAGT
GCAGCGTGACTTTTTCCCTGGAGTTGAAGGGAGCGGTAGGGGTGAAGTGG
GAGGCGTTGCAGAGGTTTTGGCTGGGTTTCGGCTTCCTGACGCTGACCCT
GTATCTGATGCGTCATTGGCAGCTGGAGGTAGGGTAGCGGAGGAAGTTGT
GAGGAGAGGTGTGTCATTGGATCTGTTCTTGTCCAAGTTTTGCTCGGAAG
ACGATTTTGAGGCTCAGCAGTTGCTACGTTCTGATGTAAGGGAGCATCGT
GAGAGGCATTGGTGGGCGTATGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67330:281..604+

>mRNA_M-pyrifera_M_contig67330.16271.1 ID=mRNA_M-pyrifera_M_contig67330.16271.1|Name=mRNA_M-pyrifera_M_contig67330.16271.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig67330:281..604+ (Macrocystis pyrifera P11B4 male)
CGTATTGTGGTGGAAGACGACTTGTTTCTGGAGTGTTTGCAACATATAGT
GCAGCGTGACTTTTTCCCTGGAGTTGAAGGGAGCGGTAGGGGTGAAGTGG
GAGGCGTTGCAGAGGTTTTGGCTGGGTTTCGGCTTCCTGACGCTGACCCT
GTATCTGATGCGTCATTGGCAGCTGGAGGTAGGGTAGCGGAGGAAGTTGT
GAGGAGAGGTGTGTCATTGGATCTGTTCTTGTCCAAGTTTTGCTCGGAAG
ACGATTTTGAGGCTCAGCAGTTGCTACGTTCTGATGTAAGGGAGCATCGT
GAGAGGCATTGGTGGGCGTATGAACGTATTGTGGTGGAAGACGACTTGTT
TCTGGAGTGTTTGCAACATATAGTGCAGCGTGACTTTTTCCCTGGAGTTG
AAGGGAGCGGTAGGGGTGAAGTGGGAGGCGTTGCAGAGGTTTTGGCTGGG
TTTCGGCTTCCTGACGCTGACCCTGTATCTGATGCGTCATTGGCAGCTGG
AGGTAGGGTAGCGGAGGAAGTTGTGAGGAGAGGTGTGTCATTGGATCTGT
TCTTGTCCAAGTTTTGCTCGGAAGACGATTTTGAGGCTCAGCAGTTGCTA
CGTTCTGATGTAAGGGAGCATCGTGAGAGGCATTGGTGGGCGTATGAA
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