mRNA_M-pyrifera_M_contig67315.16269.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67315.16269.1
Unique NamemRNA_M-pyrifera_M_contig67315.16269.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig67315.16269.1 vs. uniprot
Match: D7G4Z1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Z1_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 5.130e-29
Identity = 56/64 (87.50%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:  196 RIGGGKGGSLIPVALYRATNARYTLVYSHGNATDIGAMHDRCAGIAKAVGVNVLAYDYTGYGLA 387
            +IGGG  GS IPVALYR  NARYTLVYSHGNATDIGAMHDRCAGIA+AVGVNVLAYDYTGYG A
Sbjct:   72 KIGGGGRGSTIPVALYRTANARYTLVYSHGNATDIGAMHDRCAGIAEAVGVNVLAYDYTGYGRA 135
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BLAST of mRNA_M-pyrifera_M_contig67315.16269.1 vs. uniprot
Match: A0A6H5KNT2_9PHAE (Hydrolase_4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNT2_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.690e-27
Identity = 55/64 (85.94%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:  196 RIGGGKGGSLIPVALYRATNARYTLVYSHGNATDIGAMHDRCAGIAKAVGVNVLAYDYTGYGLA 387
            +IGGG  GS IPVALYR  NARYTL+YSHGNATDIGAMHDRCAGIA+AVGVNVLAYDYTGYG A
Sbjct:  126 KIGGGGRGSTIPVALYRTANARYTLIYSHGNATDIGAMHDRCAGIAEAVGVNVLAYDYTGYGRA 189
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BLAST of mRNA_M-pyrifera_M_contig67315.16269.1 vs. uniprot
Match: A0A7S2XWM1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWM1_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 6.090e-17
Identity = 34/52 (65.38%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:  226 IPVALYRATNARYTLVYSHGNATDIGAMHDRCAGIAKAVGVNVLAYDYTGYG 381
            IPV LYR  NA+YTL++SHGNATD+GAMHDR  G+A ++ +N++ YDYTGYG
Sbjct:   76 IPVVLYRYRNAKYTLIFSHGNATDLGAMHDRFVGLAMSLQINIVGYDYTGYG 127
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BLAST of mRNA_M-pyrifera_M_contig67315.16269.1 vs. uniprot
Match: A0A6S9I0E5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9I0E5_HETAK)

HSP 1 Score: 76.6 bits (187), Expect = 4.240e-14
Identity = 36/53 (67.92%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:  223 LIPVALYRATNARYTLVYSHGNATDIGAMHDRCAGIAKAVGVNVLAYDYTGYG 381
            +I   LYRA  A  T+VYSHGNATD+GAMHDR  G+A  + VNVLAYDYTGYG
Sbjct:   75 VITAVLYRAEGASKTIVYSHGNATDLGAMHDRYVGLATILKVNVLAYDYTGYG 127
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BLAST of mRNA_M-pyrifera_M_contig67315.16269.1 vs. uniprot
Match: A0A835YXY1_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXY1_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.190e-12
Identity = 32/52 (61.54%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:  226 IPVALYRATNARYTLVYSHGNATDIGAMHDRCAGIAKAVGVNVLAYDYTGYG 381
            + V  Y++  ARYTL++SHGNATD+GAMHDR  G+ + +GV+V+AYDYTGYG
Sbjct:   81 VVVLWYKSPYARYTLLHSHGNATDLGAMHDRYVGLVQNLGVSVVAYDYTGYG 132
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BLAST of mRNA_M-pyrifera_M_contig67315.16269.1 vs. uniprot
Match: A0A1V9ZDL9_9STRA (Hydrolase_4 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZDL9_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.530e-10
Identity = 29/57 (50.88%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:  217 GSLIPVALYRATNARYTLVYSHGNATDIGAMHDRCAGIAKAVGVNVLAYDYTGYGLA 387
            G+ IP  ++R   A +TL++SHGNATD GAM+ R   +++ + VNV+AYDY+GYG A
Sbjct:   77 GNEIPCFVFRYPEAEFTLIFSHGNATDCGAMYSRYLALSRELSVNVVAYDYSGYGAA 133
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BLAST of mRNA_M-pyrifera_M_contig67315.16269.1 vs. uniprot
Match: A0A067CL46_SAPPC (Hydrolase_4 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CL46_SAPPC)

HSP 1 Score: 65.9 bits (159), Expect = 3.490e-10
Identity = 28/57 (49.12%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:  217 GSLIPVALYRATNARYTLVYSHGNATDIGAMHDRCAGIAKAVGVNVLAYDYTGYGLA 387
            G+ +P  ++R   A +TL++SHGNATD GAM+ R   +++ + VNV+AYDY+GYG A
Sbjct:   77 GNEVPCFVFRYPEAEFTLIFSHGNATDCGAMYSRYIALSRELAVNVVAYDYSGYGAA 133
[Close]
BLAST of mRNA_M-pyrifera_M_contig67315.16269.1 vs. uniprot
Match: A0A6A2ZJT8_HIBSY (Glycerol-3-phosphate acyltransferase n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZJT8_HIBSY)

HSP 1 Score: 63.2 bits (152), Expect = 9.680e-10
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:  211 KGGSLIPVALYRATNARYTLVYSHGNATDIGAMHDRCAGIAKAVGVNVLAYDYTGYG 381
            KGG+ I    ++  +AR+TL+YSHGNA DIG MHD    +   + VN+++YDY+GYG
Sbjct:   48 KGGNKIAATFWKHPHARFTLLYSHGNAADIGQMHDLFNELRAYLRVNIMSYDYSGYG 104
[Close]
BLAST of mRNA_M-pyrifera_M_contig67315.16269.1 vs. uniprot
Match: A0A7S2RPX7_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RPX7_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.420e-9
Identity = 31/57 (54.39%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:  217 GSLIPVALYRATNARYTLVYSHGNATDIGAMHDRCAGIAKAVGVNVLAYDYTGYGLA 387
            GS IP  L+R  +A  TL++SHGNA D GAM +R   + +   VNV AYDYTGYG A
Sbjct:   74 GSFIPAFLFRHPDATLTLIFSHGNAADCGAMRERYIQLCRRGRVNVFAYDYTGYGAA 130
[Close]
BLAST of mRNA_M-pyrifera_M_contig67315.16269.1 vs. uniprot
Match: A0A0R0GDC1_SOYBN (Uncharacterized protein n=1 Tax=Glycine max TaxID=3847 RepID=A0A0R0GDC1_SOYBN)

HSP 1 Score: 62.8 bits (151), Expect = 2.320e-9
Identity = 28/57 (49.12%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:  211 KGGSLIPVALYRATNARYTLVYSHGNATDIGAMHDRCAGIAKAVGVNVLAYDYTGYG 381
            KGG+ I    ++ T AR+TL+YSHGNA D+G MHD    +   + VN+++YDY GYG
Sbjct:   53 KGGNRIVATFWKHTFARFTLLYSHGNAADLGQMHDLFLELRAHLRVNIMSYDYAGYG 109
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67315.16269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4Z1_ECTSI5.130e-2987.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNT2_9PHAE1.690e-2785.94Hydrolase_4 domain-containing protein n=1 Tax=Ecto... [more]
A0A7S2XWM1_9STRA6.090e-1765.38Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6S9I0E5_HETAK4.240e-1467.92Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YXY1_9STRA1.190e-1261.54P-loop containing nucleoside triphosphate hydrolas... [more]
A0A1V9ZDL9_9STRA2.530e-1050.88Hydrolase_4 domain-containing protein n=1 Tax=Achl... [more]
A0A067CL46_SAPPC3.490e-1049.12Hydrolase_4 domain-containing protein n=2 Tax=Sapr... [more]
A0A6A2ZJT8_HIBSY9.680e-1049.12Glycerol-3-phosphate acyltransferase n=1 Tax=Hibis... [more]
A0A7S2RPX7_9STRA1.420e-954.39Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A0R0GDC1_SOYBN2.320e-949.12Uncharacterized protein n=1 Tax=Glycine max TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67315contigM-pyrifera_M_contig67315:658..1119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue1.8e-23
Seed eggNOG ortholog2880.D7G4Z1
KEGG koko:K10908,ko:K17890
KEGG Pathwayko04136,ko04138,ko04140,ko04621,map04136,map04138,map04140,map04621
Hectar predicted targeting categoryother localisation
EggNOG free text desc.palmitoyl-(protein) hydrolase activity
EggNOG OGsCOG1073@1,KOG1552@2759
EC2.7.7.6
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029,ko04131
Exons2
Model size387
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816563.5202727-CDS-M-pyrifera_M_contig67315:657..8751622816563.5202727-CDS-M-pyrifera_M_contig67315:657..875Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67315 658..875 -
1692278048.8287091-CDS-M-pyrifera_M_contig67315:657..8751692278048.8287091-CDS-M-pyrifera_M_contig67315:657..875Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67315 658..875 -
1622816563.5321782-CDS-M-pyrifera_M_contig67315:950..11191622816563.5321782-CDS-M-pyrifera_M_contig67315:950..1119Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67315 951..1119 -
1692278048.8422866-CDS-M-pyrifera_M_contig67315:950..11191692278048.8422866-CDS-M-pyrifera_M_contig67315:950..1119Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67315 951..1119 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67315.16269.1prot_M-pyrifera_M_contig67315.16269.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67315 658..1119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67315.16269.1

>prot_M-pyrifera_M_contig67315.16269.1 ID=prot_M-pyrifera_M_contig67315.16269.1|Name=mRNA_M-pyrifera_M_contig67315.16269.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
QATVPTDGVQIAMVRSGGSGSGSGSSSISSSGITRNDSIGNDCNSLASSA
GAGGAGKFIAKASKARIGGGKGGSLIPVALYRATNARYTLVYSHGNATDI
GAMHDRCAGIAKAVGVNVLAYDYTGYGLA
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mRNA from alignment at M-pyrifera_M_contig67315:658..1119-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67315.16269.1 ID=mRNA_M-pyrifera_M_contig67315.16269.1|Name=mRNA_M-pyrifera_M_contig67315.16269.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig67315:658..1119- (Macrocystis pyrifera P11B4 male)
CAGGCGACAGTGCCTACCGACGGCGTACAGATTGCCATGGTCAGATCAGG
CGGCAGCGGCAGTGGCAGCGGCAGCAGCAGCATCAGCAGCAGCGGCATCA
CCCGCAACGATAGCATCGGCAACGACTGCAACAGCCTAGCCAGTAGCGCA
GGCGCCGGTGGCGCCGGCAGTACCACCACCAACAACAATAACAACAACAA
CCGGCCCTCTTCTTCCAAATTGAGCAAACAGGGGAGCTGCCGAGAATTTA
TTGCCAAGGCATCGAAGGCCAGGATTGGGGGCGGGAAGGGGGGGTCGCTT
ATTCCCGTGGCACTGTATCGAGCAACAAATGCGCGGTACACGCTGGTGTA
CAGCCATGGCAATGCTACGGACATTGGCGCGATGCACGACCGATGTGCTG
GGATAGCGAAGGCGGTGGGGGTGAACGTGCTTGCGTACGACTACACGGGA
TATGGCCTCGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67315:658..1119-

>mRNA_M-pyrifera_M_contig67315.16269.1 ID=mRNA_M-pyrifera_M_contig67315.16269.1|Name=mRNA_M-pyrifera_M_contig67315.16269.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig67315:658..1119- (Macrocystis pyrifera P11B4 male)
CAGGCGACAGTGCCTACCGACGGCGTACAGATTGCCATGGTCAGATCAGG
CGGCAGCGGCAGTGGCAGCGGCAGCAGCAGCATCAGCAGCAGCGGCATCA
CCCGCAACGATAGCATCGGCAACGACTGCAACAGCCTAGCCAGTAGCGCA
GGCGCCGGTGGCGCCGGCACAGGCGACAGTGCCTACCGACGGCGTACAGA
TTGCCATGGTCAGATCAGGCGGCAGCGGCAGTGGCAGCGGCAGCAGCAGC
ATCAGCAGCAGCGGCATCACCCGCAACGATAGCATCGGCAACGACTGCAA
CAGCCTAGCCAGTAGCGCAGGCGCCGGTGGCGCCGGCAAATTTATTGCCA
AGGCATCGAAGGCCAGGATTGGGGGCGGGAAGGGGGGGTCGCTTATTCCC
GTGGCACTGTATCGAGCAACAAATGCGCGGTACACGCTGGTGTACAGCCA
TGGCAATGCTACGGACATTGGCGCGATGCACGACCGATGTGCTGGGATAG
CGAAGGCGGTGGGGGTGAACGTGCTTGCGTACGACTACACGGGATATGGC
CTCGCAAATTTATTGCCAAGGCATCGAAGGCCAGGATTGGGGGCGGGAAG
GGGGGGTCGCTTATTCCCGTGGCACTGTATCGAGCAACAAATGCGCGGTA
CACGCTGGTGTACAGCCATGGCAATGCTACGGACATTGGCGCGATGCACG
ACCGATGTGCTGGGATAGCGAAGGCGGTGGGGGTGAACGTGCTTGCGTAC
GACTACACGGGATATGGCCTCGCA
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