mRNA_M-pyrifera_M_contig107634.1627.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107634.1627.1
Unique NamemRNA_M-pyrifera_M_contig107634.1627.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig107634.1627.1 vs. uniprot
Match: UPI0007042A92 (coronin-7 isoform X1 n=3 Tax=Tupaia chinensis TaxID=246437 RepID=UPI0007042A92)

HSP 1 Score: 61.2 bits (147), Expect = 1.240e-7
Identity = 49/150 (32.67%), Postives = 66/150 (44.00%), Query Frame = 1 
Query:    1 LLSGDAQGVVSLWDANGVEESCSFSEDIGAAVVSAKWMLDWQTAVVGT--NDGSVHLLDPRAASPKTGTVLAHNESFAATAAPLSRSLPHFVSCGVGSGTGARRMREWKIWDARRLSVPIATDATDEGVGALCPLVDVDTGLCFLLARGE 444
            +L+  A   V +WDA   +         G  V SA W   W  A++GT   D  + + DPRA    + +  AH           S    H VS G        R RE K+WD R  S  +A+   D   G+L PL+D D+GL  L A+GE
Sbjct:  141 VLASAAGTAVKVWDAARQQPLTELVAH-GDLVQSANW--SWDGALLGTACKDKQLRIFDPRAKPQASQSTQAHENGRDGRLVWTSTK-EHLVSTGFNQ----MREREVKLWDTRLFSSALASLTLDTSPGSLMPLLDSDSGLLVLAAKGE 282
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BLAST of mRNA_M-pyrifera_M_contig107634.1627.1 vs. uniprot
Match: N6TZK3_DENPD (Coronin (Fragment) n=3 Tax=Dendroctonus ponderosae TaxID=77166 RepID=N6TZK3_DENPD)

HSP 1 Score: 55.1 bits (131), Expect = 1.610e-5
Identity = 45/158 (28.48%), Postives = 65/158 (41.14%), Query Frame = 1 
Query:    1 LLSGDAQGVVSLWDANGVEESCSFSEDIGAAVVSAKWMLDWQTAVVGTNDGSVHLLDPRAASPKTGTVLAHN---ESFAATAAPLSRSLPHFVSCGVGSGTGARRMREWKIWDARRLSVPIATDATDEGVGALCPLVDVDTGLCFLLARGETVVRVLD 465
            LL   +   ++LWD    +E  S SE     + S  W  D         D  V ++DPRA S       +H    +S         R L         +G  A+R+R+  I D R    P  T   D   G L PL D DTG+ FL+ +G+T +  ++
Sbjct:  144 LLHSTSFTTLTLWDLISEKEVFSNSEH-DEVIQSVSWKRDGTILATSCKDKQVRIIDPRAQSVCLNQASSHQSIKDSRVVWLGDQERILT--------TGFDAQRLRQIIIRDLRNFKEPEKTMELDCSTGILIPLYDPDTGMLFLVGKGDTTIGYME 292
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107634.1627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI0007042A921.240e-732.67coronin-7 isoform X1 n=3 Tax=Tupaia chinensis TaxI... [more]
N6TZK3_DENPD1.610e-528.48Coronin (Fragment) n=3 Tax=Dendroctonus ponderosae... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107634contigM-pyrifera_M_contig107634:25..585 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score87.0
Seed ortholog evalue9.9e-15
Seed eggNOG ortholog84751.XP_007877853.1
KEGG koko:K18619
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RibD C-terminal domain
EggNOG OGs392GU@33154,3N3BE@452284,3Q0Y8@4751,3VA03@5204,KOG1445@1,KOG1445@2759
COG Functional cat.S
Best tax levelUstilaginomycotina
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons1
Model size561
Cds size561
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.1850352-CDS-M-pyrifera_M_contig107634:24..5851622815586.1850352-CDS-M-pyrifera_M_contig107634:24..585Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107634 25..585 -
1692277475.7571812-CDS-M-pyrifera_M_contig107634:24..5851692277475.7571812-CDS-M-pyrifera_M_contig107634:24..585Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107634 25..585 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107634.1627.1prot_M-pyrifera_M_contig107634.1627.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107634 25..585 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107634.1627.1

>prot_M-pyrifera_M_contig107634.1627.1 ID=prot_M-pyrifera_M_contig107634.1627.1|Name=mRNA_M-pyrifera_M_contig107634.1627.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=187bp
LLSGDAQGVVSLWDANGVEESCSFSEDIGAAVVSAKWMLDWQTAVVGTND
GSVHLLDPRAASPKTGTVLAHNESFAATAAPLSRSLPHFVSCGVGSGTGA
RRMREWKIWDARRLSVPIATDATDEGVGALCPLVDVDTGLCFLLARGETV
VRVLDAGKAASASTVRDAQLATRFLTGGAVGAAPPRH
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mRNA from alignment at M-pyrifera_M_contig107634:25..585-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107634.1627.1 ID=mRNA_M-pyrifera_M_contig107634.1627.1|Name=mRNA_M-pyrifera_M_contig107634.1627.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=561bp|location=Sequence derived from alignment at M-pyrifera_M_contig107634:25..585- (Macrocystis pyrifera P11B4 male)
CTGTTGAGTGGAGATGCGCAAGGAGTGGTTTCGTTGTGGGATGCGAATGG
TGTGGAGGAGAGTTGTTCGTTTTCGGAGGACATTGGAGCGGCTGTGGTTT
CAGCAAAATGGATGTTGGATTGGCAAACTGCAGTGGTGGGCACCAACGAC
GGGAGTGTACATCTCTTGGATCCTCGCGCCGCATCCCCAAAGACTGGAAC
CGTGCTTGCGCACAACGAGAGCTTTGCGGCCACTGCTGCTCCTCTGAGTC
GATCCTTGCCCCACTTTGTGTCGTGTGGCGTTGGTTCTGGCACGGGGGCC
AGGAGAATGCGCGAGTGGAAGATCTGGGATGCGCGCCGGCTCTCTGTGCC
CATTGCGACGGATGCGACGGACGAAGGCGTGGGAGCCTTGTGTCCCTTGG
TGGATGTGGACACGGGACTGTGTTTCCTCCTCGCACGTGGAGAAACAGTG
GTAAGAGTGTTGGATGCAGGGAAAGCAGCCAGTGCCTCCACCGTCAGGGA
CGCACAACTGGCCACTCGCTTCCTCACTGGAGGAGCTGTGGGAGCGGCGC
CTCCAAGGCAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107634:25..585-

>mRNA_M-pyrifera_M_contig107634.1627.1 ID=mRNA_M-pyrifera_M_contig107634.1627.1|Name=mRNA_M-pyrifera_M_contig107634.1627.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1122bp|location=Sequence derived from alignment at M-pyrifera_M_contig107634:25..585- (Macrocystis pyrifera P11B4 male)
CTGTTGAGTGGAGATGCGCAAGGAGTGGTTTCGTTGTGGGATGCGAATGG
TGTGGAGGAGAGTTGTTCGTTTTCGGAGGACATTGGAGCGGCTGTGGTTT
CAGCAAAATGGATGTTGGATTGGCAAACTGCAGTGGTGGGCACCAACGAC
GGGAGTGTACATCTCTTGGATCCTCGCGCCGCATCCCCAAAGACTGGAAC
CGTGCTTGCGCACAACGAGAGCTTTGCGGCCACTGCTGCTCCTCTGAGTC
GATCCTTGCCCCACTTTGTGTCGTGTGGCGTTGGTTCTGGCACGGGGGCC
AGGAGAATGCGCGAGTGGAAGATCTGGGATGCGCGCCGGCTCTCTGTGCC
CATTGCGACGGATGCGACGGACGAAGGCGTGGGAGCCTTGTGTCCCTTGG
TGGATGTGGACACGGGACTGTGTTTCCTCCTCGCACGTGGAGAAACAGTG
GTAAGAGTGTTGGATGCAGGGAAAGCAGCCAGTGCCTCCACCGTCAGGGA
CGCACAACTGGCCACTCGCTTCCTCACTGGAGGAGCTGTGGGAGCGGCGC
CTCCAAGGCACCTGTTGAGTGGAGATGCGCAAGGAGTGGTTTCGTTGTGG
GATGCGAATGGTGTGGAGGAGAGTTGTTCGTTTTCGGAGGACATTGGAGC
GGCTGTGGTTTCAGCAAAATGGATGTTGGATTGGCAAACTGCAGTGGTGG
GCACCAACGACGGGAGTGTACATCTCTTGGATCCTCGCGCCGCATCCCCA
AAGACTGGAACCGTGCTTGCGCACAACGAGAGCTTTGCGGCCACTGCTGC
TCCTCTGAGTCGATCCTTGCCCCACTTTGTGTCGTGTGGCGTTGGTTCTG
GCACGGGGGCCAGGAGAATGCGCGAGTGGAAGATCTGGGATGCGCGCCGG
CTCTCTGTGCCCATTGCGACGGATGCGACGGACGAAGGCGTGGGAGCCTT
GTGTCCCTTGGTGGATGTGGACACGGGACTGTGTTTCCTCCTCGCACGTG
GAGAAACAGTGGTAAGAGTGTTGGATGCAGGGAAAGCAGCCAGTGCCTCC
ACCGTCAGGGACGCACAACTGGCCACTCGCTTCCTCACTGGAGGAGCTGT
GGGAGCGGCGCCTCCAAGGCAC
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