prot_M-pyrifera_M_contig107634.1627.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig107634.1627.1
Unique Nameprot_M-pyrifera_M_contig107634.1627.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length187
Homology
BLAST of mRNA_M-pyrifera_M_contig107634.1627.1 vs. uniprot
Match: UPI0007042A92 (coronin-7 isoform X1 n=3 Tax=Tupaia chinensis TaxID=246437 RepID=UPI0007042A92)

HSP 1 Score: 61.2 bits (147), Expect = 1.240e-7
Identity = 49/150 (32.67%), Postives = 66/150 (44.00%), Query Frame = 0
Query:    1 LLSGDAQGVVSLWDANGVEESCSFSEDIGAAVVSAKWMLDWQTAVVGT--NDGSVHLLDPRAASPKTGTVLAHNESFAATAAPLSRSLPHFVSCGVGSGTGARRMREWKIWDARRLSVPIATDATDEGVGALCPLVDVDTGLCFLLARGE 148
            +L+  A   V +WDA   +         G  V SA W   W  A++GT   D  + + DPRA    + +  AH           S    H VS G        R RE K+WD R  S  +A+   D   G+L PL+D D+GL  L A+GE
Sbjct:  141 VLASAAGTAVKVWDAARQQPLTELVAH-GDLVQSANW--SWDGALLGTACKDKQLRIFDPRAKPQASQSTQAHENGRDGRLVWTSTK-EHLVSTGFNQ----MREREVKLWDTRLFSSALASLTLDTSPGSLMPLLDSDSGLLVLAAKGE 282          
BLAST of mRNA_M-pyrifera_M_contig107634.1627.1 vs. uniprot
Match: N6TZK3_DENPD (Coronin (Fragment) n=3 Tax=Dendroctonus ponderosae TaxID=77166 RepID=N6TZK3_DENPD)

HSP 1 Score: 55.1 bits (131), Expect = 1.610e-5
Identity = 45/158 (28.48%), Postives = 65/158 (41.14%), Query Frame = 0
Query:    1 LLSGDAQGVVSLWDANGVEESCSFSEDIGAAVVSAKWMLDWQTAVVGTNDGSVHLLDPRAASPKTGTVLAHN---ESFAATAAPLSRSLPHFVSCGVGSGTGARRMREWKIWDARRLSVPIATDATDEGVGALCPLVDVDTGLCFLLARGETVVRVLD 155
            LL   +   ++LWD    +E  S SE     + S  W  D         D  V ++DPRA S       +H    +S         R L         +G  A+R+R+  I D R    P  T   D   G L PL D DTG+ FL+ +G+T +  ++
Sbjct:  144 LLHSTSFTTLTLWDLISEKEVFSNSEH-DEVIQSVSWKRDGTILATSCKDKQVRIIDPRAQSVCLNQASSHQSIKDSRVVWLGDQERILT--------TGFDAQRLRQIIIRDLRNFKEPEKTMELDCSTGILIPLYDPDTGMLFLVGKGDTTIGYME 292          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107634.1627.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI0007042A921.240e-732.67coronin-7 isoform X1 n=3 Tax=Tupaia chinensis TaxI... [more]
N6TZK3_DENPD1.610e-528.48Coronin (Fragment) n=3 Tax=Dendroctonus ponderosae... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..180
e-value: 4.8E-24
score: 86.8
IPR015505CoroninPANTHERPTHR10856CORONINcoord: 2..159
IPR027331Coronin 7PANTHERPTHR10856:SF20CORONIN-7coord: 2..159
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 1..118

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107634contigM-pyrifera_M_contig107634:25..585 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107634.1627.1mRNA_M-pyrifera_M_contig107634.1627.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig107634 25..585 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig107634.1627.1 ID=prot_M-pyrifera_M_contig107634.1627.1|Name=mRNA_M-pyrifera_M_contig107634.1627.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=187bp
LLSGDAQGVVSLWDANGVEESCSFSEDIGAAVVSAKWMLDWQTAVVGTND
GSVHLLDPRAASPKTGTVLAHNESFAATAAPLSRSLPHFVSCGVGSGTGA
RRMREWKIWDARRLSVPIATDATDEGVGALCPLVDVDTGLCFLLARGETV
VRVLDAGKAASASTVRDAQLATRFLTGGAVGAAPPRH
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR015505Coronin
IPR027331CORO7
IPR036322WD40_repeat_dom_sf