mRNA_M-pyrifera_M_contig67263.16262.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig67263.16262.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 236 bits (602), Expect = 1.620e-67 Identity = 118/253 (46.64%), Postives = 181/253 (71.54%), Query Frame = 1
Query: 1 PALFCMPLLPILKRVREEFEPRGVEAFAYLDDISIGISEITPDTVRVVPFLQHELCEIGVAINPSKTVALPPKGHVPTSEEIALLGGIGVRIAEGGGVKVVGVPIGTDAFAVNSAVEIVRDGGAEQLARILPRMPDKQSANLIATSSMVKRTSYIERVMDPELSLPACQRADNSVIWMLERLLELPGIADESPFFADGCPANRLTLQPHQKAQASLSTGAGGFGLSSAESRRMSASIGSLVATVPEVLADLSG 759
P LF + L+PI+ +++++++P GV AY+DDI++ + ++T ++V+ + L EL E+G+ +N +K+ ALPP GH+ T ++ LL G+G+ +A G G+ VVGVPIGTD + A++++ +GGAE+LAR+LP M D+Q ANLI + S+++R++YIER +DP L+ AC+R DN V W LE + + G E FF GC L L+P+Q+AQ LSTGAGG G+SSA RR SAS+G+L++T+PEV+A L+G
Sbjct: 746 PPLFSLILIPIILKLQDKYKPLGVAFKAYMDDITLHLKDLTEESVQAMTDLVDELAEVGIVVNRAKSSALPPPGHMITDQQRRLLEGVGLTVA-GEGITVVGVPIGTDNYVREFAMKVITEGGAEKLARMLPLMSDRQVANLITSLSLIQRSAYIERGIDPTLTKEACERLDNMVQWALETGMGIEGTESEEEFFQQGCQDTDLKLRPYQRAQTQLSTGAGGLGVSSAVMRRFSASLGNLISTLPEVIASLTG 997
BLAST of mRNA_M-pyrifera_M_contig67263.16262.1 vs. uniprot
Match: A0A6H5J7C4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7C4_9PHAE) HSP 1 Score: 221 bits (564), Expect = 1.920e-67 Identity = 119/253 (47.04%), Postives = 171/253 (67.59%), Query Frame = 1
Query: 1 PALFCMPLLPILKRVREEFEPRGVEAFAYLDDISIGISEITPDTVRVVPFLQHELCEIGVAINPSKTVALPPKGHVPTSEEIALLGGIGVRIAEGGGVKVVGVPIGTDAFAVNSAVEIVRDGGAEQLARILPRMPDKQSANLIATSSMVKRTSYIERVMDPELSLPACQRADNSVIWMLERLLELPGIADESPFFADGCPANRLTLQPHQKAQASLSTGAGGFGLSSAESRRMSASIGSLVATVPEVLADLSG 759
P LFC L+PI+ ++R +++ GV +Y+DDIS+ IT + ++V+P L EL +G+ +N K+ ALPP GH T E LLG G+ IAE G + VVGVPIG DA+ + A++++ +GGA++LAR+L RMPDKQ A+L+ + S+ +R+ YIER ++ +L AC+R DN V+W+LE + L E FF D C +R L+P+Q+AQA LSTGAGG GL +A RR SAS+G+LV T+P V+A L G
Sbjct: 23 PPLFCFILVPIVLKLRAKYDHLGVCLKSYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGKDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYIERGINHKLVKGACKRLDNMVMWVLEATMGLRDTEVEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALRG 274
BLAST of mRNA_M-pyrifera_M_contig67263.16262.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE) HSP 1 Score: 224 bits (570), Expect = 5.110e-65 Identity = 120/253 (47.43%), Postives = 172/253 (67.98%), Query Frame = 1
Query: 1 PALFCMPLLPILKRVREEFEPRGVEAFAYLDDISIGISEITPDTVRVVPFLQHELCEIGVAINPSKTVALPPKGHVPTSEEIALLGGIGVRIAEGGGVKVVGVPIGTDAFAVNSAVEIVRDGGAEQLARILPRMPDKQSANLIATSSMVKRTSYIERVMDPELSLPACQRADNSVIWMLERLLELPGIADESPFFADGCPANRLTLQPHQKAQASLSTGAGGFGLSSAESRRMSASIGSLVATVPEVLADLSG 759
P LFC L+PI+ ++R +++ GV AY+DDIS+ IT + ++V+P + EL +G+ +N K+ ALPP GH T E LLG G+ IAE G + VVGVPIGTDA+ + A++++ +GGA++LAR+L RMPDKQ A+L+ + S+ +R+ YIER ++ +L AC+R DN V+W+LE + L E FF D C +R L+P+Q+AQA LSTGAGG GL +A RR SAS+G+LV T+P V+A L G
Sbjct: 123 PPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDVVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYIERGINHKLVKGACKRLDNMVMWVLEATMGLRDTEVEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALRG 374
BLAST of mRNA_M-pyrifera_M_contig67263.16262.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE) HSP 1 Score: 220 bits (560), Expect = 7.550e-64 Identity = 119/254 (46.85%), Postives = 171/254 (67.32%), Query Frame = 1
Query: 1 PALFCMPLLPILKRVREEFEPRGVEAFAYLDDI-SIGISEITPDTVRVVPFLQHELCEIGVAINPSKTVALPPKGHVPTSEEIALLGGIGVRIAEGGGVKVVGVPIGTDAFAVNSAVEIVRDGGAEQLARILPRMPDKQSANLIATSSMVKRTSYIERVMDPELSLPACQRADNSVIWMLERLLELPGIADESPFFADGCPANRLTLQPHQKAQASLSTGAGGFGLSSAESRRMSASIGSLVATVPEVLADLSG 759
P LFC L+PI+ ++R +++ GV AY+DDI S+ IT + ++V+P L EL +G+ +N K+ ALPP GH T E LLG G+ IAE G + VVGVPIGTDA+ + A++++ +GGA++LAR+L RMPDKQ A+L+ + S+ +R+ YIER ++ +L AC+R +N V+W+LE + L E FF D C +R L+P+Q+AQA LSTGAGG GL +A RR SAS+G+LV T+P V+ L G
Sbjct: 207 PPLFCFTLVPIVLKLRAKYDNLGVRLKAYMDDIISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYIERGINHKLVRGACERLENMVMWVLEATMGLRDTEVEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVGTLPAVIVALRG 459
BLAST of mRNA_M-pyrifera_M_contig67263.16262.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE) HSP 1 Score: 224 bits (571), Expect = 1.960e-63 Identity = 121/253 (47.83%), Postives = 172/253 (67.98%), Query Frame = 1
Query: 1 PALFCMPLLPILKRVREEFEPRGVEAFAYLDDISIGISEITPDTVRVVPFLQHELCEIGVAINPSKTVALPPKGHVPTSEEIALLGGIGVRIAEGGGVKVVGVPIGTDAFAVNSAVEIVRDGGAEQLARILPRMPDKQSANLIATSSMVKRTSYIERVMDPELSLPACQRADNSVIWMLERLLELPGIADESPFFADGCPANRLTLQPHQKAQASLSTGAGGFGLSSAESRRMSASIGSLVATVPEVLADLSG 759
P LFC L+PI+ ++R +++ GV AY+DDIS+ IT + ++V+P L EL +G+ +N K+ ALPP GH T E LLG G+ IAE G + VVGVPIGTDA+ + A++++ +GGA++LAR+L RMPDKQ A+L+ + S+ +R+ YIER ++ +L AC+R DN V+W+LE + L E FF D C +R L+P+Q+AQA LSTGAGG GL +A RR SAS+G+LV T+P V+A L G
Sbjct: 576 PPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYIERGINHKLVRGACKRLDNMVMWVLEATMGLRDTEVEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVDTLPAVIAALRG 827
BLAST of mRNA_M-pyrifera_M_contig67263.16262.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE) HSP 1 Score: 217 bits (552), Expect = 1.670e-61 Identity = 117/253 (46.25%), Postives = 169/253 (66.80%), Query Frame = 1
Query: 1 PALFCMPLLPILKRVREEFEPRGVEAFAYLDDISIGISEITPDTVRVVPFLQHELCEIGVAINPSKTVALPPKGHVPTSEEIALLGGIGVRIAEGGGVKVVGVPIGTDAFAVNSAVEIVRDGGAEQLARILPRMPDKQSANLIATSSMVKRTSYIERVMDPELSLPACQRADNSVIWMLERLLELPGIADESPFFADGCPANRLTLQPHQKAQASLSTGAGGFGLSSAESRRMSASIGSLVATVPEVLADLSG 759
P LFC L+PI+ ++R +++ GV AY+DDIS+ IT + ++V+P L EL +G+ +N K+ AL P G E LLG G+ IAE G + VVGVPIGTDA+ + A++++ +GGA++LAR+L RMPDKQ A+L+ + S+ +R+ Y+ER ++ +L AC+R DN V+W+LE + L E FF D C +R L+P+Q+AQA LSTGAGG GL +A RR SAS+G+LV T+P V+A L G
Sbjct: 597 PPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALHPPGRDVAPAERRLLGDAGLPIAEEG-ITVVGVPIGTDAYVEDIAIKVIAEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYLERGINHKLVRGACERLDNMVMWVLEATMGLRDTEVEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALRG 848
BLAST of mRNA_M-pyrifera_M_contig67263.16262.1 vs. uniprot
Match: A0A6H5JLG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLG6_9PHAE) HSP 1 Score: 206 bits (525), Expect = 1.240e-57 Identity = 118/261 (45.21%), Postives = 166/261 (63.60%), Query Frame = 1
Query: 1 PALFCMPLLPILKRVREEFEPRGVEAFAYLDDISIGISEITPDTVRVVPFLQHELCEIGVAINPSKTVALPPKGHVPTSEEIALLGGIGVRIAEGGGVKVVGVPIGTDAFAVNSAVEIVRDGGAEQLARILPRMPDKQSANLIATSSMVKRTSYIERVMDPELSLPACQRADNSVIWMLERLLELPGIADESPFFADGCPANRL-----TLQPHQK---AQASLSTGAGGFGLSSAESRRMSASIGSLVATVPEVLADLSG 759
P LFC L+PI+ +VR +++ GV AY+DDIS+ IT + ++V+P L EL +G+ +N K+ ALPP GH T E LLG G+ IAE G + VVGVPIGTDA+ + A++++ +GGA++LAR++ RMPDKQ A+L+ + + +R+ IER ++ +L AC+R DN V+W+LE + L DE FF D C +R L P AQA LS GAGG GL +A RR SAS+G+LV T+P V+A L G
Sbjct: 215 PPLFCFILVPIVSKVRAKYDHLGVSLKAYVDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGTDAYVEDIAMKVITEGGADKLARMVVRMPDKQVAHLVTSQLLTQRSGNIERGINHKLVRGACERLDNMVMWVLEATMGLRDAEDEEEFFQDDCQPDRFKRLAGALVPADAPPAAQARLSAGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALRG 474
BLAST of mRNA_M-pyrifera_M_contig67263.16262.1 vs. uniprot
Match: A0A6H5K2M1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M1_9PHAE) HSP 1 Score: 191 bits (484), Expect = 5.370e-54 Identity = 110/253 (43.48%), Postives = 156/253 (61.66%), Query Frame = 1
Query: 1 PALFCMPLLPILKRVREEFEPRGVEAFAYLDDISIGISEITPDTVRVVPFLQHELCEIGVAINPSKTVALPPKGHVPTSEEIALLGGIGVRIAEGGGVKVVGVPIGTDAFAVNSAVEIVRDGGAEQLARILPRMPDKQSANLIATSSMVKRTSYIERVMDPELSLPACQRADNSVIWMLERLLELPGIADESPFFADGCPANRLTLQPHQKAQASLSTGAGGFGLSSAESRRMSASIGSLVATVPEVLADLSG 759
P LFC L+PI+ ++ +++ GV +P L EL +G+ +N K+ ALPP G T E LLG G+ IAE G + VVGVPIGTDA+ + A++ + +GGA++LAR+L RMPDKQ A+ + + S+ +R+ YIER ++ +L AC+R DN V+W+LE + L DE FF D C +R L+P+Q+AQA LSTGAGG GL +A RR SAS+G+LV+T+P V+A L G
Sbjct: 82 PPLFCFILVPIVLKLGSKYDHLGV-----------------------IPDLVDELEAVGIIVNRGKSSALPPPGQDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGTDAYVEDFAMKAITEGGADKLARMLVRMPDKQEAHFVISQSLTQRSGYIERGINHKLVRGACERLDNMVMWVLEATMGLRDTEDEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVSTLPAVIAALRG 310
BLAST of mRNA_M-pyrifera_M_contig67263.16262.1 vs. uniprot
Match: A0A6H5JTC7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC7_9PHAE) HSP 1 Score: 177 bits (450), Expect = 1.610e-47 Identity = 92/204 (45.10%), Postives = 135/204 (66.18%), Query Frame = 1
Query: 1 PALFCMPLLPILKRVREEFEPRGVEAFAYLDDISIGISEITPDTVRVVPFLQHELCEIGVAINPSKTVALPPKGHVPTSEEIALLGGIGVRIAEGGGVKVVGVPIGTDAFAVNSAVEIVRDGGAEQLARILPRMPDKQSANLIATSSMVKRTSYIERVMDPELSLPACQRADNSVIWMLERLLELPGIADESPFFADGCPANRL 612
P LFC L+PI+ ++R +++ GV AY+DDIS+ IT + ++V+P L EL +G+ +N K+ ALPP GH T E LLG G+ IAE G + VVGVPIGTDA+ + A++++ +GGA++LAR+L RMPDKQ A+L+ + S+ +R+ YIER ++ +L AC+R DN V+W+LE + L DE FF D C +R
Sbjct: 3 PPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYIERGINHKLVKGACKRLDNMVMWVLEATMGLRVTEDEEEFFRDDCQPDRF 205
BLAST of mRNA_M-pyrifera_M_contig67263.16262.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE) HSP 1 Score: 163 bits (413), Expect = 1.840e-42 Identity = 85/185 (45.95%), Postives = 126/185 (68.11%), Query Frame = 1
Query: 1 PALFCMPLLPILKRVREEFEPRGVEAFAYLDDISIGISEITPDTVRVVPFLQHELCEIGVAINPSKTVALPPKGHVPTSEEIALLGGIGVRIAEGGGVKVVGVPIGTDAFAVNSAVEIVRDGGAEQLARILPRMPDKQSANLIATSSMVKRTSYIERVMDPELSLPACQRADNSVIWMLERLLEL 555
P LFC L+PI+ ++R +++ GV AY+DDIS+ +IT + ++V P L EL +G+ +N K+ ALPP GH T E LG G+ IAE G + VVGVPIGTDA+ + A++++ +GGAE+LAR+L RMPDKQ A+L+ + S+ +R+ YIER ++ +L AC+R DN V+W+LE + L
Sbjct: 575 PPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKDITAENIQVTPDLVDELEAVGIIVNRGKSSALPPPGHDVTPTERRPLGDAGLPIAEEG-ITVVGVPIGTDAYVEDIAMKVITEGGAEKLARLLVRMPDKQVAHLVTSQSLTQRSGYIERGINHKLVKGACKRLDNMVMWVLEATMGL 758 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67263.16262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig67263.16262.1 >prot_M-pyrifera_M_contig67263.16262.1 ID=prot_M-pyrifera_M_contig67263.16262.1|Name=mRNA_M-pyrifera_M_contig67263.16262.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=248bp MPLLPILKRVREEFEPRGVEAFAYLDDISIGISEITPDTVRVVPFLQHELback to top mRNA from alignment at M-pyrifera_M_contig67263:513..1271- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig67263.16262.1 ID=mRNA_M-pyrifera_M_contig67263.16262.1|Name=mRNA_M-pyrifera_M_contig67263.16262.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=759bp|location=Sequence derived from alignment at M-pyrifera_M_contig67263:513..1271- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig67263:513..1271- >mRNA_M-pyrifera_M_contig67263.16262.1 ID=mRNA_M-pyrifera_M_contig67263.16262.1|Name=mRNA_M-pyrifera_M_contig67263.16262.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1488bp|location=Sequence derived from alignment at M-pyrifera_M_contig67263:513..1271- (Macrocystis pyrifera P11B4 male)back to top |