mRNA_M-pyrifera_M_contig67262.16261.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67262.16261.1
Unique NamemRNA_M-pyrifera_M_contig67262.16261.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig67262.16261.1 vs. uniprot
Match: A0A7S1G6W4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G6W4_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 5.530e-9
Identity = 48/153 (31.37%), Postives = 71/153 (46.41%), Query Frame = 1 
Query:    7 LTRADALRLQRIVQAARLDMLDPDTLHMVLLTAEERGVLTLERFENVLHRLLPALSHERPARSAVWVRTMLRRIFAAFDRTGQRRVSGPEFAAALSLLVSGSKSDKIVLSWSRFSRAGSGIYGEREAASALGTPTRLGRIDLWRLIRSILVPL 465
            +T AD   L+R++ A+ L   +   LH       E GVL    F+  + RL+P  S     +   ++   L  IF AFDR G   V   EF +  SLLV GSKSDK+ L++  F   G G                + R+++W+ +R+ L  L
Sbjct:   50 ITGADVKHLRRVIAASHLAEKELPALHAEFKREAEDGVLDKPAFDRAIRRLIPGSSLSPEDKQ--FLSFALSNIFFAFDRDGNNVVDFDEFLSGFSLLVQGSKSDKLALAFRMFDEDGDGY---------------ISRLEMWKYLRAFLTML 185
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67262.16261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S1G6W4_9STRA5.530e-931.37Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67262contigM-pyrifera_M_contig67262:310..1044 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue1.7e-06
Seed eggNOG ortholog42099.EPrPV00000019238
KEGG koko:K06268,ko:K17610
KEGG Pathwayko04010,ko04020,ko04022,ko04114,ko04218,ko04310,ko04360,ko04370,ko04380,ko04650,ko04658,ko04659,ko04660,ko04662,ko04720,ko04724,ko04921,ko04922,ko04924,ko05010,ko05014,ko05031,ko05152,ko05166,ko05167,map04010,map04020,map04022,map04114,map04218,map04310,map04360,map04370,map04380,map04650,map04658,map04659,map04660,map04662,map04720,map04724,map04921,map04922,map04924,map05010,map05014,map05031,map05152,map05166,map05167
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0005488,GO:0005509,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0009892,GO:0010563,GO:0010921,GO:0010923,GO:0016020,GO:0019220,GO:0019222,GO:0031323,GO:0031324,GO:0035303,GO:0035305,GO:0043086,GO:0043167,GO:0043169,GO:0044092,GO:0044464,GO:0045936,GO:0046872,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051174,GO:0051336,GO:0051346,GO:0065007,GO:0065009,GO:0071944
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0034@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009
Exons1
Model size735
Cds size735
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816562.9430459-CDS-M-pyrifera_M_contig67262:309..10441622816562.9430459-CDS-M-pyrifera_M_contig67262:309..1044Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67262 310..1044 -
1692278048.5014362-CDS-M-pyrifera_M_contig67262:309..10441692278048.5014362-CDS-M-pyrifera_M_contig67262:309..1044Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67262 310..1044 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67262.16261.1prot_M-pyrifera_M_contig67262.16261.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67262 310..1044 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67262.16261.1

>prot_M-pyrifera_M_contig67262.16261.1 ID=prot_M-pyrifera_M_contig67262.16261.1|Name=mRNA_M-pyrifera_M_contig67262.16261.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=245bp
IALTRADALRLQRIVQAARLDMLDPDTLHMVLLTAEERGVLTLERFENVL
HRLLPALSHERPARSAVWVRTMLRRIFAAFDRTGQRRVSGPEFAAALSLL
VSGSKSDKIVLSWSRFSRAGSGIYGEREAASALGTPTRLGRIDLWRLIRS
ILVPLALLPFLEDRACASSSSMRQALLDEIDYRALQLTDLAVDEAPAIES
SEGEEEEDHFDDRGRKLSLEEFSVWYNRKRHKEISFLELTDLTKW
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mRNA from alignment at M-pyrifera_M_contig67262:310..1044-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67262.16261.1 ID=mRNA_M-pyrifera_M_contig67262.16261.1|Name=mRNA_M-pyrifera_M_contig67262.16261.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=735bp|location=Sequence derived from alignment at M-pyrifera_M_contig67262:310..1044- (Macrocystis pyrifera P11B4 male)
ATTGCATTAACTCGAGCAGATGCATTGCGTTTGCAACGCATTGTACAAGC
TGCTCGACTCGATATGCTTGACCCTGATACACTTCACATGGTACTCCTCA
CAGCAGAAGAACGTGGAGTGTTGACATTGGAGCGCTTTGAAAACGTACTC
CATCGTCTTCTCCCTGCATTGTCTCATGAACGTCCTGCACGTTCTGCAGT
TTGGGTTCGAACAATGCTGCGTCGCATCTTTGCTGCATTTGATAGGACTG
GACAACGCCGTGTATCTGGACCAGAATTCGCTGCAGCTCTCTCACTCCTC
GTGTCGGGATCAAAGTCTGACAAGATTGTATTGTCATGGTCACGATTCTC
CAGAGCTGGCTCTGGGATTTATGGAGAGCGAGAAGCAGCATCTGCACTTG
GTACACCAACACGATTGGGACGAATTGATCTCTGGCGATTGATTCGATCT
ATCCTTGTACCACTGGCACTTCTCCCCTTTTTGGAAGACAGAGCATGTGC
AAGTTCTTCTTCAATGCGTCAAGCATTGTTGGATGAAATTGACTACCGTG
CACTCCAACTCACTGATCTTGCTGTCGATGAAGCTCCAGCCATTGAAAGC
AGTGAAGGTGAGGAAGAGGAAGATCATTTTGATGATCGTGGACGCAAGTT
GTCTCTTGAAGAATTCTCAGTCTGGTACAACCGCAAACGGCACAAAGAAA
TCAGTTTCCTTGAACTTACTGACCTCACAAAGTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67262:310..1044-

>mRNA_M-pyrifera_M_contig67262.16261.1 ID=mRNA_M-pyrifera_M_contig67262.16261.1|Name=mRNA_M-pyrifera_M_contig67262.16261.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1470bp|location=Sequence derived from alignment at M-pyrifera_M_contig67262:310..1044- (Macrocystis pyrifera P11B4 male)
ATTGCATTAACTCGAGCAGATGCATTGCGTTTGCAACGCATTGTACAAGC
TGCTCGACTCGATATGCTTGACCCTGATACACTTCACATGGTACTCCTCA
CAGCAGAAGAACGTGGAGTGTTGACATTGGAGCGCTTTGAAAACGTACTC
CATCGTCTTCTCCCTGCATTGTCTCATGAACGTCCTGCACGTTCTGCAGT
TTGGGTTCGAACAATGCTGCGTCGCATCTTTGCTGCATTTGATAGGACTG
GACAACGCCGTGTATCTGGACCAGAATTCGCTGCAGCTCTCTCACTCCTC
GTGTCGGGATCAAAGTCTGACAAGATTGTATTGTCATGGTCACGATTCTC
CAGAGCTGGCTCTGGGATTTATGGAGAGCGAGAAGCAGCATCTGCACTTG
GTACACCAACACGATTGGGACGAATTGATCTCTGGCGATTGATTCGATCT
ATCCTTGTACCACTGGCACTTCTCCCCTTTTTGGAAGACAGAGCATGTGC
AAGTTCTTCTTCAATGCGTCAAGCATTGTTGGATGAAATTGACTACCGTG
CACTCCAACTCACTGATCTTGCTGTCGATGAAGCTCCAGCCATTGAAAGC
AGTGAAGGTGAGGAAGAGGAAGATCATTTTGATGATCGTGGACGCAAGTT
GTCTCTTGAAGAATTCTCAGTCTGGTACAACCGCAAACGGCACAAAGAAA
TCAGTTTCCTTGAACTTACTGACCTCACAAAGTGGATTGCATTAACTCGA
GCAGATGCATTGCGTTTGCAACGCATTGTACAAGCTGCTCGACTCGATAT
GCTTGACCCTGATACACTTCACATGGTACTCCTCACAGCAGAAGAACGTG
GAGTGTTGACATTGGAGCGCTTTGAAAACGTACTCCATCGTCTTCTCCCT
GCATTGTCTCATGAACGTCCTGCACGTTCTGCAGTTTGGGTTCGAACAAT
GCTGCGTCGCATCTTTGCTGCATTTGATAGGACTGGACAACGCCGTGTAT
CTGGACCAGAATTCGCTGCAGCTCTCTCACTCCTCGTGTCGGGATCAAAG
TCTGACAAGATTGTATTGTCATGGTCACGATTCTCCAGAGCTGGCTCTGG
GATTTATGGAGAGCGAGAAGCAGCATCTGCACTTGGTACACCAACACGAT
TGGGACGAATTGATCTCTGGCGATTGATTCGATCTATCCTTGTACCACTG
GCACTTCTCCCCTTTTTGGAAGACAGAGCATGTGCAAGTTCTTCTTCAAT
GCGTCAAGCATTGTTGGATGAAATTGACTACCGTGCACTCCAACTCACTG
ATCTTGCTGTCGATGAAGCTCCAGCCATTGAAAGCAGTGAAGGTGAGGAA
GAGGAAGATCATTTTGATGATCGTGGACGCAAGTTGTCTCTTGAAGAATT
CTCAGTCTGGTACAACCGCAAACGGCACAAAGAAATCAGTTTCCTTGAAC
TTACTGACCTCACAAAGTGG
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