mRNA_M-pyrifera_M_contig67212.16257.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67212.16257.1
Unique NamemRNA_M-pyrifera_M_contig67212.16257.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig67212.16257.1 vs. uniprot
Match: D8LC88_ECTSI (RNA-dependent RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC88_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.370e-19
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:   43 QEITEFFVNYLVNDNLGVIANAHLVHADQSPVGAKGSECLKLAALHSTAVDFGKSGVPAVIP 228
            +EI +FF+ Y+ NDNLG IANAHLV AD SP+GA+  ECL+LAALHS AVDF KSGVPAV P
Sbjct:  761 KEIADFFLKYIQNDNLGKIANAHLVRADLSPLGARCDECLQLAALHSKAVDFPKSGVPAVFP 822
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BLAST of mRNA_M-pyrifera_M_contig67212.16257.1 vs. uniprot
Match: A0A433BKK0_9FUNG (RNA-dependent RNA polymerase (Fragment) n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433BKK0_9FUNG)

HSP 1 Score: 90.1 bits (222), Expect = 1.680e-19
Identity = 45/74 (60.81%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:    1 KNKTPTGHVVKTIGQEITEFFVNYLVNDNLGVIANAHLVHADQSPVGAKGSECLKLAALHSTAVDFGKSGVPAV 222
            K+    G V K    +I  FFVNY++NDNLG+IANAHL HAD+SP GAK   CLKLA LHS AVDF K+G PA+
Sbjct:   40 KSSYKPGEVDKVEILDIKRFFVNYILNDNLGMIANAHLAHADKSPEGAKDGRCLKLAQLHSIAVDFPKTGNPAI 113
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BLAST of mRNA_M-pyrifera_M_contig67212.16257.1 vs. uniprot
Match: D8LNY3_ECTSI (RNA-dependent RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNY3_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 2.500e-19
Identity = 44/62 (70.97%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:   43 QEITEFFVNYLVNDNLGVIANAHLVHADQSPVGAKGSECLKLAALHSTAVDFGKSGVPAVIP 228
            +EI +FF+ Y+ NDNLG IANAHLV AD SP GA+  ECL+LAALHS AVDF KSGVPAV P
Sbjct:  467 KEIADFFLKYIQNDNLGKIANAHLVRADLSPFGARCDECLQLAALHSKAVDFPKSGVPAVFP 528
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BLAST of mRNA_M-pyrifera_M_contig67212.16257.1 vs. uniprot
Match: A0A835IYY2_9MAGN (RNA-dependent RNA polymerase n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835IYY2_9MAGN)

HSP 1 Score: 89.7 bits (221), Expect = 3.490e-19
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:   43 QEITEFFVNYLVNDNLGVIANAHLVHADQSPVGAKGSECLKLAALHSTAVDFGKSGVPAVIP 228
            +EI EFFVNY++NDNLGVIA AHLVHAD+ P  A+  +CL LA LHS AVDF K+G PA +P
Sbjct:  894 EEIQEFFVNYMINDNLGVIATAHLVHADREPEKARSKKCLNLATLHSMAVDFAKNGAPAEMP 955
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BLAST of mRNA_M-pyrifera_M_contig67212.16257.1 vs. uniprot
Match: M8AI48_TRIUA (RNA-dependent RNA polymerase n=2 Tax=Triticum TaxID=4564 RepID=M8AI48_TRIUA)

HSP 1 Score: 87.4 bits (215), Expect = 4.820e-19
Identity = 39/63 (61.90%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:   43 QEITEFFVNYLVNDNLGVIANAHLVHADQSPVGAKGSECLKLAALHSTAVDFGKSGVPAVIPK 231
            QEI ++FV+Y++ND+LG I+ AHLVHAD+ P+ A+  ECL+LAALHS AVDF KSG PA +P+
Sbjct:   28 QEIQKYFVDYMINDSLGAISTAHLVHADRHPMKARSPECLQLAALHSMAVDFAKSGAPAEMPR 90
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BLAST of mRNA_M-pyrifera_M_contig67212.16257.1 vs. uniprot
Match: A0A453C5U7_AEGTS (RNA-dependent RNA polymerase n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453C5U7_AEGTS)

HSP 1 Score: 86.3 bits (212), Expect = 1.080e-18
Identity = 38/63 (60.32%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:   43 QEITEFFVNYLVNDNLGVIANAHLVHADQSPVGAKGSECLKLAALHSTAVDFGKSGVPAVIPK 231
            QEI ++FV+Y++ND+LG I+ AHLVHAD+ P+ A+  ECL+LAALHS AVDF K+G PA +P+
Sbjct:   14 QEIQKYFVDYMINDSLGAISTAHLVHADRHPMKARSPECLQLAALHSMAVDFAKTGAPAEMPR 76
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BLAST of mRNA_M-pyrifera_M_contig67212.16257.1 vs. uniprot
Match: A0A0A9F2B6_ARUDO (RNA-dependent RNA polymerase n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9F2B6_ARUDO)

HSP 1 Score: 83.2 bits (204), Expect = 1.570e-18
Identity = 36/63 (57.14%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:   43 QEITEFFVNYLVNDNLGVIANAHLVHADQSPVGAKGSECLKLAALHSTAVDFGKSGVPAVIPK 231
            +EI + FV+Y++ND LG+I+ AHL+HAD  P+ A+  ECL+LAALHS AVDF K+G PA +P+
Sbjct:   18 EEIQKHFVDYMINDALGIISTAHLIHADHDPLKARSPECLQLAALHSMAVDFAKTGAPAEMPR 80
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BLAST of mRNA_M-pyrifera_M_contig67212.16257.1 vs. uniprot
Match: A0A2K3PMX5_TRIPR (RNA-dependent RNA polymerase n=3 Tax=Trifolium TaxID=3898 RepID=A0A2K3PMX5_TRIPR)

HSP 1 Score: 87.4 bits (215), Expect = 2.260e-18
Identity = 38/63 (60.32%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:   43 QEITEFFVNYLVNDNLGVIANAHLVHADQSPVGAKGSECLKLAALHSTAVDFGKSGVPAVIPK 231
            +E+ E+F NY++ND+LG+IANAH VHAD+ P+ A    C+KLA L STAVDF K+G+PAVIP+
Sbjct:  846 EEVEEYFTNYILNDSLGIIANAHTVHADKEPLKAMAEPCIKLAKLFSTAVDFPKTGIPAVIPR 908
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BLAST of mRNA_M-pyrifera_M_contig67212.16257.1 vs. uniprot
Match: S8CG21_9LAMI (RNA-dependent RNA polymerase (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8CG21_9LAMI)

HSP 1 Score: 87.0 bits (214), Expect = 3.080e-18
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:   43 QEITEFFVNYLVNDNLGVIANAHLVHADQSPVGAKGSECLKLAALHSTAVDFGKSGVPAVIPK 231
            QEI  FF +Y+V+D LG I+NAHLVHAD+ P  A  S+CL+LAALHSTAVD+ KSG PA +P+
Sbjct:  844 QEIQRFFADYMVSDTLGAISNAHLVHADREPEKALSSKCLELAALHSTAVDYAKSGAPAAMPR 906
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BLAST of mRNA_M-pyrifera_M_contig67212.16257.1 vs. uniprot
Match: A0A1S3VQP1_VIGRR (RNA-dependent RNA polymerase n=7 Tax=Vigna TaxID=3913 RepID=A0A1S3VQP1_VIGRR)

HSP 1 Score: 87.0 bits (214), Expect = 3.080e-18
Identity = 41/62 (66.13%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:   46 EITEFFVNYLVNDNLGVIANAHLVHADQSPVGAKGSECLKLAALHSTAVDFGKSGVPAVIPK 231
            E+ E+F NY+VND+LG+IANAH V AD+ P  A  +ECLKLA L STAVDF K+GVPAVIP+
Sbjct:  853 EVEEYFTNYMVNDSLGIIANAHTVFADRQPKKAMSAECLKLAKLFSTAVDFPKTGVPAVIPR 914
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67212.16257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC88_ECTSI1.370e-1970.97RNA-dependent RNA polymerase n=1 Tax=Ectocarpus si... [more]
A0A433BKK0_9FUNG1.680e-1960.81RNA-dependent RNA polymerase (Fragment) n=2 Tax=Ji... [more]
D8LNY3_ECTSI2.500e-1970.97RNA-dependent RNA polymerase n=1 Tax=Ectocarpus si... [more]
A0A835IYY2_9MAGN3.490e-1966.13RNA-dependent RNA polymerase n=1 Tax=Coptis chinen... [more]
M8AI48_TRIUA4.820e-1961.90RNA-dependent RNA polymerase n=2 Tax=Triticum TaxI... [more]
A0A453C5U7_AEGTS1.080e-1860.32RNA-dependent RNA polymerase n=1 Tax=Aegilops taus... [more]
A0A0A9F2B6_ARUDO1.570e-1857.14RNA-dependent RNA polymerase n=1 Tax=Arundo donax ... [more]
A0A2K3PMX5_TRIPR2.260e-1860.32RNA-dependent RNA polymerase n=3 Tax=Trifolium Tax... [more]
S8CG21_9LAMI3.080e-1863.49RNA-dependent RNA polymerase (Fragment) n=1 Tax=Ge... [more]
A0A1S3VQP1_VIGRR3.080e-1866.13RNA-dependent RNA polymerase n=7 Tax=Vigna TaxID=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67212contigM-pyrifera_M_contig67212:309..539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue1.3e-16
Seed eggNOG ortholog2880.D8LC88
Preferred nameRDR1
KEGG koko:K11699
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001101,GO:0001172,GO:0002252,GO:0002376,GO:0003006,GO:0003674,GO:0003824,GO:0003968,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006396,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007154,GO:0007275,GO:0008037,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009615,GO:0009616,GO:0009620,GO:0009719,GO:0009725,GO:0009751,GO:0009791,GO:0009856,GO:0009875,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009908,GO:0009987,GO:0010025,GO:0010033,GO:0010073,GO:0010074,GO:0010166,GO:0010267,GO:0010467,GO:0010468,GO:0010492,GO:0010495,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0016043,GO:0016070,GO:0016246,GO:0016441,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019827,GO:0022414,GO:0030422,GO:0031047,GO:0031048,GO:0031050,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0034062,GO:0034641,GO:0034654,GO:0035194,GO:0035821,GO:0040029,GO:0042221,GO:0042493,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043331,GO:0044003,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044706,GO:0045087,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0046677,GO:0048366,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048467,GO:0048507,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048544,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051607,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0051817,GO:0052018,GO:0052249,GO:0060147,GO:0060148,GO:0060255,GO:0060968,GO:0061458,GO:0065007,GO:0070013,GO:0070887,GO:0070918,GO:0070919,GO:0071310,GO:0071359,GO:0071407,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090567,GO:0097659,GO:0097747,GO:0098542,GO:0098586,GO:0098727,GO:0099402,GO:0140098,GO:1901360,GO:1901362,GO:1901568,GO:1901570,GO:1901576,GO:1901698,GO:1901699,GO:1901700,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.RNA-directed 5'-3' RNA polymerase activity
EggNOG OGsKOG0988@1,KOG0988@2759
EC2.7.7.48
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816562.7599216-CDS-M-pyrifera_M_contig67212:308..5391622816562.7599216-CDS-M-pyrifera_M_contig67212:308..539Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67212 309..539 -
1692278048.407909-CDS-M-pyrifera_M_contig67212:308..5391692278048.407909-CDS-M-pyrifera_M_contig67212:308..539Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67212 309..539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67212.16257.1prot_M-pyrifera_M_contig67212.16257.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67212 309..539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67212.16257.1

>prot_M-pyrifera_M_contig67212.16257.1 ID=prot_M-pyrifera_M_contig67212.16257.1|Name=mRNA_M-pyrifera_M_contig67212.16257.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=77bp
KNKTPTGHVVKTIGQEITEFFVNYLVNDNLGVIANAHLVHADQSPVGAKG
SECLKLAALHSTAVDFGKSGVPAVIPK
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mRNA from alignment at M-pyrifera_M_contig67212:309..539-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67212.16257.1 ID=mRNA_M-pyrifera_M_contig67212.16257.1|Name=mRNA_M-pyrifera_M_contig67212.16257.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=231bp|location=Sequence derived from alignment at M-pyrifera_M_contig67212:309..539- (Macrocystis pyrifera P11B4 male)
AAAAACAAGACTCCTACTGGCCATGTGGTGAAAACGATTGGACAGGAAAT
CACCGAGTTCTTCGTGAACTACTTGGTGAACGACAACCTCGGCGTGATCG
CGAACGCCCACCTGGTGCACGCGGACCAGTCTCCAGTCGGGGCCAAGGGC
AGCGAGTGCCTCAAGCTGGCGGCTCTGCACTCGACGGCGGTGGACTTCGG
CAAGTCGGGCGTCCCCGCTGTCATCCCGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67212:309..539-

>mRNA_M-pyrifera_M_contig67212.16257.1 ID=mRNA_M-pyrifera_M_contig67212.16257.1|Name=mRNA_M-pyrifera_M_contig67212.16257.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig67212:309..539- (Macrocystis pyrifera P11B4 male)
AAAAACAAGACTCCTACTGGCCATGTGGTGAAAACGATTGGACAGGAAAT
CACCGAGTTCTTCGTGAACTACTTGGTGAACGACAACCTCGGCGTGATCG
CGAACGCCCACCTGGTGCACGCGGACCAGTCTCCAGTCGGGGCCAAGGGC
AGCGAGTGCCTCAAGCTGGCGGCTCTGCACTCGACGGCGGTGGACTTCGG
CAAGTCGGGCGTCCCCGCTGTCATCCCGAAGAAAAACAAGACTCCTACTG
GCCATGTGGTGAAAACGATTGGACAGGAAATCACCGAGTTCTTCGTGAAC
TACTTGGTGAACGACAACCTCGGCGTGATCGCGAACGCCCACCTGGTGCA
CGCGGACCAGTCTCCAGTCGGGGCCAAGGGCAGCGAGTGCCTCAAGCTGG
CGGCTCTGCACTCGACGGCGGTGGACTTCGGCAAGTCGGGCGTCCCCGCT
GTCATCCCGAAG
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