mRNA_M-pyrifera_M_contig6721.16256.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6721.16256.1
Unique NamemRNA_M-pyrifera_M_contig6721.16256.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig6721.16256.1 vs. uniprot
Match: D7FS37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS37_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 5.780e-27
Identity = 53/82 (64.63%), Postives = 65/82 (79.27%), Query Frame = 1
Query:    1 AKAITAGCSHTCGLLDDGSVKCFGYNNYGQLGQ----DIGDKSGQMGNNLKAVSLGSTKVVAIAAGCDFTCAVKNDGAVVCW 234
            A A+  GC HTCGLLDDG+VKCFGYNNYGQLGQ    ++GD +G+MG++L AVSL  T V A+AAGCD TCA+ +DG V+CW
Sbjct:  135 AVAVALGCRHTCGLLDDGTVKCFGYNNYGQLGQGTTENMGDDAGEMGDDLPAVSLDGT-VSAVAAGCDHTCALMDDGTVMCW 215          
BLAST of mRNA_M-pyrifera_M_contig6721.16256.1 vs. uniprot
Match: A0A6H5L2S4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2S4_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.380e-22
Identity = 46/78 (58.97%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    1 AKAITAGCSHTCGLLDDGSVKCFGYNNYGQLGQDIGDKSGQMGNNLKAVSLGSTKVVAIAAGCDFTCAVKNDGAVVCW 234
            A A+ AGC HTCGLLDDG+VKCFGY        ++GD +G+MG++L AVSL  T V A+AAGCD TCA+ +DG V+CW
Sbjct:   79 AVAVAAGCRHTCGLLDDGTVKCFGYTT--GTTDNMGDDAGEMGDDLPAVSLDGT-VSAVAAGCDHTCALMDDGTVMCW 153          
BLAST of mRNA_M-pyrifera_M_contig6721.16256.1 vs. uniprot
Match: A0A7C1YRK2_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1YRK2_9ACTN)

HSP 1 Score: 89.4 bits (220), Expect = 5.090e-19
Identity = 47/83 (56.63%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    1 AKAITAGCSHTCGLLDDGSVKCFGYNNYGQLGQ----DIGDKSGQMGNNLKAVSLGSTKVV-AIAAGCDFTCAVKNDGAVVCW 234
            A AI AG  +TC LLDDG+VKC+G N+ GQLGQ    DIGD  G+MG+NL AV LG+ +   AI+AG   TCA+ +DG V CW
Sbjct:  171 ATAIAAGQQYTCALLDDGTVKCWGNNSSGQLGQGNTDDIGDNPGEMGDNLPAVDLGTGRTATAISAGSSHTCALLDDGTVKCW 253          
BLAST of mRNA_M-pyrifera_M_contig6721.16256.1 vs. uniprot
Match: A0A3L7WUR8_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3L7WUR8_9CHLR)

HSP 1 Score: 88.6 bits (218), Expect = 9.610e-19
Identity = 43/87 (49.43%), Postives = 59/87 (67.82%), Query Frame = 1
Query:    1 AKAITAGCSHTCGLLDDGSVKCFGYNNYGQLGQD----IGDKSGQMGNNLKAVSLGSTKVVAIAAGC-----DFTCAVKNDGAVVCW 234
            AK I AG  HTC +LD+GS+KC+G+N  GQLGQD    IGD SG+MG++L A++LGS +     A C     D+TCA+ ++G + CW
Sbjct:  272 AKTIAAGSYHTCAILDNGSLKCWGFNASGQLGQDTTANIGDGSGEMGDSLPAINLGSGRTAVAVAACKRGDLDYTCAILDNGTLKCW 358          
BLAST of mRNA_M-pyrifera_M_contig6721.16256.1 vs. uniprot
Match: A0A150SGB2_SORCE (Uncharacterized protein n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150SGB2_SORCE)

HSP 1 Score: 88.2 bits (217), Expect = 1.300e-18
Identity = 47/81 (58.02%), Postives = 57/81 (70.37%), Query Frame = 1
Query:   10 ITAGCSHTCGLLDDGSVKCFGYNNYGQLGQD-----IGDKSGQMGNNLKAVSLGSTKV-VAIAAGCDFTCAVKNDGAVVCW 234
            I AG SHTC LLDD SVKC+GYNNYGQLG +     IG  + +MG+NL  V+LG+ K  +AIAAG   TCA+ ND +V CW
Sbjct:  595 IAAGDSHTCALLDDNSVKCWGYNNYGQLGLERSISYIGRSATEMGDNLAPVNLGTGKTAIAIAAGQYHTCALLNDNSVKCW 675          
BLAST of mRNA_M-pyrifera_M_contig6721.16256.1 vs. uniprot
Match: A0A7C1YKS1_9ACTN (Fibronectin type-III domain-containing protein (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1YKS1_9ACTN)

HSP 1 Score: 87.8 bits (216), Expect = 1.770e-18
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    1 AKAITAGCSHTCGLLDDGSVKCFGYNNYGQLGQ----DIGDKSGQMGNNLKAVSLGSTKV-VAIAAGCDFTCAVKNDGAVVCW 234
            A  +  G SH C LLD+G+VKC+G+N  GQLGQ    DIGD  G+MG+NL ++ LG+ +  VAIAAG   TCA+ +DG++ CW
Sbjct:  162 AVMVVGGLSHVCALLDNGTVKCWGHNTAGQLGQGHTNDIGDNPGEMGDNLPSIDLGTGRTAVAIAAGSHHTCAILDDGSLKCW 244          
BLAST of mRNA_M-pyrifera_M_contig6721.16256.1 vs. uniprot
Match: A0A7C1YL65_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1YL65_9ACTN)

HSP 1 Score: 86.3 bits (212), Expect = 6.080e-18
Identity = 46/83 (55.42%), Postives = 57/83 (68.67%), Query Frame = 1
Query:    1 AKAITAGCSHTCGLLDDGSVKCFGYNNYGQLGQ----DIGDKSGQMGNNLKAVSLGSTKVV-AIAAGCDFTCAVKNDGAVVCW 234
            A AITAG SHTC LLD+ +VKC+G N+YGQLGQ    DIGD  G+MG+NL  V LG+ +   AI AG   TCA+ ++  V CW
Sbjct:  226 ATAITAGDSHTCALLDNSTVKCWGDNSYGQLGQGTTDDIGDNPGEMGDNLPPVDLGAGRTATAITAGSFHTCALLDNNTVKCW 308          
BLAST of mRNA_M-pyrifera_M_contig6721.16256.1 vs. uniprot
Match: A0A4Q3JH07_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A4Q3JH07_9DELT)

HSP 1 Score: 82.0 bits (201), Expect = 8.940e-18
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 1
Query:    1 AKAITAGCSHTCGLLDDGSVKCFGYNNYGQLG----QDIGDKSGQMGNNLKAVSLGS-TKVVAIAAGCDFTCAVKNDGAVVCW 234
            A+AI AG  HTC LL+D +VKC+G+N  GQLG    +D GDK G+MG+ L AV LG+  KV  +AA    TCAV +DG++ CW
Sbjct:   55 AQAIVAGSGHTCALLNDQTVKCWGWNVAGQLGLGDAEDRGDKPGEMGDALPAVDLGAGAKVTRLAASGSHTCAVLSDGSLRCW 137          
BLAST of mRNA_M-pyrifera_M_contig6721.16256.1 vs. uniprot
Match: A0A6I2WE64_9ACTN (Fibronectin type-III domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A6I2WE64_9ACTN)

HSP 1 Score: 85.5 bits (210), Expect = 1.150e-17
Identity = 43/83 (51.81%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    1 AKAITAGCSHTCGLLDDGSVKCFGYNNYGQLG----QDIGDKSGQMGNNLKAVSLGSTKV-VAIAAGCDFTCAVKNDGAVVCW 234
            A+AI+AG +HTC +LD+ +VKC+G   YG+LG     D+GD +G+MG NL AVSLG+ +  +AI+AG   TCAV N+G+  CW
Sbjct:  349 ARAISAGIAHTCAVLDNATVKCWGNGGYGKLGYENQNDLGDGAGEMGTNLAAVSLGTGRTALAISAGGAHTCAVLNNGSAKCW 431          
BLAST of mRNA_M-pyrifera_M_contig6721.16256.1 vs. uniprot
Match: A0A812QEI3_9DINO (UVR8 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812QEI3_9DINO)

HSP 1 Score: 84.7 bits (208), Expect = 1.400e-17
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    1 AKAITAGCSHTCGLLDDGSVKCFGYNNYGQLGQ----DIGDKSGQMGNNLKAVSLGSTK-VVAIAAGCDFTCAVKNDGAVVCW 234
            A+A+ AG  H C LLDD SVKC+G N++GQLGQ     IGD+ G+MG NL+ V LGS +  +A+AAG   +CA+ +D +V CW
Sbjct:  286 AQALAAGEDHACALLDDNSVKCWGKNDFGQLGQGHTRSIGDEPGEMGENLQPVDLGSNRHALAVAAGALHSCAILDDYSVKCW 368          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6721.16256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS37_ECTSI5.780e-2764.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2S4_9PHAE1.380e-2258.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7C1YRK2_9ACTN5.090e-1956.63Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
A0A3L7WUR8_9CHLR9.610e-1949.43Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A150SGB2_SORCE1.300e-1858.02Uncharacterized protein n=1 Tax=Sorangium cellulos... [more]
A0A7C1YKS1_9ACTN1.770e-1851.81Fibronectin type-III domain-containing protein (Fr... [more]
A0A7C1YL65_9ACTN6.080e-1855.42Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A4Q3JH07_9DELT8.940e-1853.01Uncharacterized protein (Fragment) n=1 Tax=Myxococ... [more]
A0A6I2WE64_9ACTN1.150e-1751.81Fibronectin type-III domain-containing protein n=2... [more]
A0A812QEI3_9DINO1.400e-1751.81UVR8 protein n=1 Tax=Symbiodinium necroappetens Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6721contigM-pyrifera_M_contig6721:2506..3160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue4.6e-22
Seed eggNOG ortholog2880.D7FS37
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsCOG5021@1,KOG0941@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size237
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816562.7140355-CDS-M-pyrifera_M_contig6721:2505..26041622816562.7140355-CDS-M-pyrifera_M_contig6721:2505..2604Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6721 2506..2604 +
1692278048.373661-CDS-M-pyrifera_M_contig6721:2505..26041692278048.373661-CDS-M-pyrifera_M_contig6721:2505..2604Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6721 2506..2604 +
1622816562.72612-CDS-M-pyrifera_M_contig6721:3022..31601622816562.72612-CDS-M-pyrifera_M_contig6721:3022..3160Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6721 3023..3160 +
1692278048.3912268-CDS-M-pyrifera_M_contig6721:3022..31601692278048.3912268-CDS-M-pyrifera_M_contig6721:3022..3160Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6721 3023..3160 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6721.16256.1prot_M-pyrifera_M_contig6721.16256.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6721 2506..3160 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6721.16256.1

>prot_M-pyrifera_M_contig6721.16256.1 ID=prot_M-pyrifera_M_contig6721.16256.1|Name=mRNA_M-pyrifera_M_contig6721.16256.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
AKAITAGCSHTCGLLDDGSVKCFGYNNYGQLGQDIGDKSGQMGNNLKAVS
LGSTKVVAIAAGCDFTCAVKNDGAVVCW*
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mRNA from alignment at M-pyrifera_M_contig6721:2506..3160+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6721.16256.1 ID=mRNA_M-pyrifera_M_contig6721.16256.1|Name=mRNA_M-pyrifera_M_contig6721.16256.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=655bp|location=Sequence derived from alignment at M-pyrifera_M_contig6721:2506..3160+ (Macrocystis pyrifera P11B4 male)
GCAAAGGCGATCACGGCTGGCTGCTCTCACACGTGCGGCCTGCTCGACGA CGGCTCGGTGAAGTGCTTCGGGTACAACAACTACGGACAGTTGGGCCAGG TGCGTGGAACGGCCTGGAAGGGCAGTACTCGTTAATCCGCGTCGTTGCTG CCGACCTTTTTTTTAATACTCCAAACAACAGACTCATTACGAATGGGTGT ATCATATCACACCTCGGTACCTATAATCAGTAGAGAGGCATGTTGCAGCG GAGCAGGTAGTAACACGATGTGGATCGCTACATATGCAAGAGCTATTCAT CATCCCATTTGAGACTGCATCCATCGCTTTGGAGACACACAGGCTTGGTA CTTGGGACGTAAGGTGGGGTACGTGCTGCACGTGGTAGTAGGAGAGTTAC TTCGTGCGCGGAGCAACGATATCGATTAGTCCATAGTGCTCCTGTGTGTG TACAACATGGGGACCCTGGTCTCTTCGCCGCCGTCGGTGCTGTTGTCGCA CGCAGGGCTCGACCAAGGATATCGGTGACAAATCCGGTCAAATGGGGAAC AACCTCAAGGCTGTGTCCCTCGGTAGCACGAAGGTGGTCGCCATCGCTGC CGGTTGCGACTTTACGTGCGCAGTCAAGAATGACGGGGCCGTCGTGTGCT GGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6721:2506..3160+

>mRNA_M-pyrifera_M_contig6721.16256.1 ID=mRNA_M-pyrifera_M_contig6721.16256.1|Name=mRNA_M-pyrifera_M_contig6721.16256.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig6721:2506..3160+ (Macrocystis pyrifera P11B4 male)
GCAAAGGCGATCACGGCTGGCTGCTCTCACACGTGCGGCCTGCTCGACGA
CGGCTCGGTGAAGTGCTTCGGGTACAACAACTACGGACAGTTGGGCCAGG
CAAAGGCGATCACGGCTGGCTGCTCTCACACGTGCGGCCTGCTCGACGAC
GGCTCGGTGAAGTGCTTCGGGTACAACAACTACGGACAGTTGGGCCAGGA
TATCGGTGACAAATCCGGTCAAATGGGGAACAACCTCAAGGCTGTGTCCC
TCGGTAGCACGAAGGTGGTCGCCATCGCTGCCGGTTGCGACTTTACGTGC
GCAGTCAAGAATGACGGGGCCGTCGTGTGCTGGTGAGATATCGGTGACAA
ATCCGGTCAAATGGGGAACAACCTCAAGGCTGTGTCCCTCGGTAGCACGA
AGGTGGTCGCCATCGCTGCCGGTTGCGACTTTACGTGCGCAGTCAAGAAT
GACGGGGCCGTCGTGTGCTGGTGA
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