mRNA_M-pyrifera_M_contig67132.16245.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67132.16245.1
Unique NamemRNA_M-pyrifera_M_contig67132.16245.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig67132.16245.1 vs. uniprot
Match: A0A5A8DHL9_CAFRO (Cytochrome b5 heme-binding domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DHL9_CAFRO)

HSP 1 Score: 89.7 bits (221), Expect = 1.320e-19
Identity = 49/100 (49.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:    1 LPRYDGHDGRRPLLLAVGSEVFDVTSGWRFYGPDAPYHVFAAKDSTRALTLGVL--EDPENPEAA----LREPPAEEVKKQVEFYRSKYGFVGVLQSSSH 282
            L  Y+G D   PLLLA+G EVFDVT+G RFYGPD PY +FAA+DS+RALT G L  ED +  +A      ++     ++ QV FYR KY   G L   +H
Sbjct:  103 LAAYNGTDEGLPLLLAIGGEVFDVTAGARFYGPDGPYKIFAARDSSRALTKGSLNEEDWKGDKAIYLGDFQDHDWNALRDQVHFYRGKYRLAGGLVGGAH 202          
BLAST of mRNA_M-pyrifera_M_contig67132.16245.1 vs. uniprot
Match: A0A1V9YMK8_9STRA (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMK8_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.640e-13
Identity = 38/91 (41.76%), Postives = 52/91 (57.14%), Query Frame = 1
Query:    1 LPRYDGHDGRRPLLLAVGSEVFDVTSGWRFYGPDAPYHVFAAKDSTRALTLGVLEDPENPEAALREPP--AEEVKKQVEFYRSKYGFVGVL 267
            L  +DG D  +P+ LAVG +V DVTSG +FY   A Y++FA    TRALT+  LE  +  +      P   +E+ K + FY  KY  VGV+
Sbjct:   62 LAAFDGSDEAKPIFLAVGGKVLDVTSGKKFYEKGAGYNIFAGTACTRALTIASLEQKDLTDDIANFTPEQVQELHKTLAFYYDKYPVVGVM 152          
BLAST of mRNA_M-pyrifera_M_contig67132.16245.1 vs. uniprot
Match: D0NLJ0_PHYIT (Cytochrome b5 heme-binding domain-containing protein n=14 Tax=Phytophthora TaxID=4783 RepID=D0NLJ0_PHYIT)

HSP 1 Score: 71.6 bits (174), Expect = 2.120e-13
Identity = 39/91 (42.86%), Postives = 52/91 (57.14%), Query Frame = 1
Query:    1 LPRYDGHDGRRPLLLAVGSEVFDVTSGWRFYGPDAPYHVFAAKDSTRALTLGVL--EDPENPEAALREPPAEEVKKQVEFYRSKYGFVGVL 267
            L  YDG D  +P+L+AVG +V DVTSG +FY     Y+ FA    TRAL LG L  ED  +  +   +   +E+++  EFY  KY  VG L
Sbjct:   69 LRMYDGSDEEKPILVAVGGKVLDVTSGAKFYAKGKSYNQFAGTACTRALALGSLKKEDISDDVSDFNDKKKKELEETKEFYYEKYPIVGEL 159          
BLAST of mRNA_M-pyrifera_M_contig67132.16245.1 vs. uniprot
Match: A0A3M6VJ27_9STRA (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VJ27_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.120e-13
Identity = 38/88 (43.18%), Postives = 51/88 (57.95%), Query Frame = 1
Query:   10 YDGHDGRRPLLLAVGSEVFDVTSGWRFYGPDAPYHVFAAKDSTRALTLGVL--EDPENPEAALREPPAEEVKKQVEFYRSKYGFVGVL 267
            +DG D  +P+LLAVG +V DVT+G  FYG    Y++FA    TRAL LG L  ED  +  +   E   +E+ +  EFY  KY  +G L
Sbjct:   72 FDGSDEEKPILLAVGGKVLDVTTGANFYGKGKSYNLFAGTACTRALALGSLDKEDINDDISGFDEEQMKELVETKEFYYGKYPIIGEL 159          
BLAST of mRNA_M-pyrifera_M_contig67132.16245.1 vs. uniprot
Match: A0A4W4GD07_ELEEL (Neudesin neurotrophic factor n=2 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4GD07_ELEEL)

HSP 1 Score: 70.9 bits (172), Expect = 4.220e-13
Identity = 45/108 (41.67%), Postives = 59/108 (54.63%), Query Frame = 1
Query:    1 LPRYDGHDGRRPLLLAVGSEVFDVTSGWRFYGPDAPYHVFAAKDSTRALTLGVL--EDPENPEAALREPPAEEVKKQVE-FYRSKYGFVGVLQSSSHT-DGTQSEGEK 312
            L  YDG +  +P+ +A+   VFDVTSG RFYG DAPY+    KDSTRA+    L  ED  +    L E   E ++      Y+SKY  VG     + + DG+ SEG K
Sbjct:   40 LRSYDGSEDGQPIYMAIKGIVFDVTSGKRFYGKDAPYNALVGKDSTRAVAKMSLDPEDLTHDTTGLTEKELESLESVFTGTYKSKYPIVGYTSRRTLSEDGSPSEGFK 147          
BLAST of mRNA_M-pyrifera_M_contig67132.16245.1 vs. uniprot
Match: H3H103_PHYRM (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H103_PHYRM)

HSP 1 Score: 69.3 bits (168), Expect = 1.660e-12
Identity = 38/88 (43.18%), Postives = 49/88 (55.68%), Query Frame = 1
Query:   10 YDGHDGRRPLLLAVGSEVFDVTSGWRFYGPDAPYHVFAAKDSTRALTLGVL--EDPENPEAALREPPAEEVKKQVEFYRSKYGFVGVL 267
            YDG D  +P+LLAVG +V DVTSG +FY     Y+ FA    TRAL LG L  ED  +      +   +E+ +  EFY  KY  +G L
Sbjct:   72 YDGSDEEKPILLAVGGKVLDVTSGAKFYAKGKSYNQFAGTACTRALALGSLKKEDISDDVEDFDDKKNKELDETKEFYYEKYPIIGEL 159          
BLAST of mRNA_M-pyrifera_M_contig67132.16245.1 vs. uniprot
Match: A0A225WDJ0_9STRA (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225WDJ0_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.990e-12
Identity = 39/85 (45.88%), Postives = 49/85 (57.65%), Query Frame = 1
Query:   10 YDGHDGRRPLLLAVGSEVFDVTSGWRFYGPDAPYHVFAAKDSTRALTLGVL--EDPENPEAALREPPAEEVKKQVEFYRSKYGFV 258
            YDG D  +P+LLAVG +V DVTSG +FY     Y++FA    TRAL LG L  ED  +  A   E   +E+ +  EFY  KY  V
Sbjct:   72 YDGSDEEKPILLAVGGKVLDVTSGAKFYAKGKSYNLFAGMACTRALALGSLKKEDITDDVADFDEKKKKELVETKEFYYEKYPIV 156          
BLAST of mRNA_M-pyrifera_M_contig67132.16245.1 vs. uniprot
Match: B9F868_ORYSJ (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Oryza TaxID=4527 RepID=B9F868_ORYSJ)

HSP 1 Score: 68.6 bits (166), Expect = 2.790e-12
Identity = 37/99 (37.37%), Postives = 54/99 (54.55%), Query Frame = 1
Query:    1 LPRYDGHDGRRPLLLAVGSEVFDVTSGWRFYGPDAPYHVFAAKDSTRALTLGVLE--DPENPEAALREPPAEEVKKQVEFYRSKYGFVGVLQSSSHTDG 291
            L  YDG D  +P+L+A+  +V+DVT G  FYGP  PY +FA +D+TRAL L   +  D       L     E ++   + ++ +Y  VG L S +  DG
Sbjct:   48 LAAYDGKDPAKPILIAIRGQVYDVTRGRLFYGPQGPYSLFAGRDATRALALMSFDPIDLTGDLDGLGPDELEVLQDWEDKFKERYPTVGHLASENAADG 146          
BLAST of mRNA_M-pyrifera_M_contig67132.16245.1 vs. uniprot
Match: A0A024U980_9STRA (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U980_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.800e-12
Identity = 39/91 (42.86%), Postives = 53/91 (58.24%), Query Frame = 1
Query:    1 LPRYDGHDGRRPLLLAVGSEVFDVTSGWRFYGPDAPYHVFAAKDSTRALTLGVLEDPENPEAALREPPAEE--VKKQVEFYRSKYGFVGVL 267
            L +YDG D  RP+ +AVG  V DVTSG +FY   A Y+ FA +  TRAL L  L+  +  +      PA+E  ++  + FY+ KY  VGVL
Sbjct:   70 LKQYDGTDESRPIYMAVGGVVLDVTSGSKFYQKGAEYNQFAGQACTRALALASLDVKDINDDVSDFTPAQEKELEATLSFYQGKYPKVGVL 160          
BLAST of mRNA_M-pyrifera_M_contig67132.16245.1 vs. uniprot
Match: UPI0007190708 (membrane-associated progesterone receptor component 1-like n=3 Tax=Polistes TaxID=7456 RepID=UPI0007190708)

HSP 1 Score: 69.7 bits (169), Expect = 3.280e-12
Identity = 42/112 (37.50%), Postives = 62/112 (55.36%), Query Frame = 1
Query:    1 LPRYDGH--DGRRPLLLAVGSEVFDVTSGWRFYGPDAPYHVFAAKDSTRALTLGVLEDPENPEAALREPPAEEVKKQVEF---YRSKYGFVGVLQSSSHTDGTQSEGEKEGS 321
            L +YDGH  DGR  +L+A+   V+DVT G  FYGP APY VFA +D++R L    LE  ++    L +  +E++    E+   ++ +Y +VG L          S+ E EGS
Sbjct:   81 LKKYDGHGPDGR--ILVALNGSVYDVTRGAAFYGPGAPYAVFAGRDASRGLATFTLEPLKDEYDDLSDLDSEQMSSMKEWELQFKERYDYVGKLLKLGEEPTNYSDEEDEGS 190          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67132.16245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DHL9_CAFRO1.320e-1949.00Cytochrome b5 heme-binding domain-containing prote... [more]
A0A1V9YMK8_9STRA1.640e-1341.76Cytochrome b5 heme-binding domain-containing prote... [more]
D0NLJ0_PHYIT2.120e-1342.86Cytochrome b5 heme-binding domain-containing prote... [more]
A0A3M6VJ27_9STRA2.120e-1343.18Cytochrome b5 heme-binding domain-containing prote... [more]
A0A4W4GD07_ELEEL4.220e-1341.67Neudesin neurotrophic factor n=2 Tax=Electrophorus... [more]
H3H103_PHYRM1.660e-1243.18Cytochrome b5 heme-binding domain-containing prote... [more]
A0A225WDJ0_9STRA1.990e-1245.88Cytochrome b5 heme-binding domain-containing prote... [more]
B9F868_ORYSJ2.790e-1237.37Cytochrome b5 heme-binding domain-containing prote... [more]
A0A024U980_9STRA2.800e-1242.86Cytochrome b5 heme-binding domain-containing prote... [more]
UPI00071907083.280e-1237.50membrane-associated progesterone receptor componen... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67132contigM-pyrifera_M_contig67132:253..588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue1e-11
Seed eggNOG ortholog36331.EPrPI00000017827
KEGG koko:K17278
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cytochrome b5-like Heme/Steroid binding domain
EggNOG OGs1MHG0@121069,KOG1110@1,KOG1110@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Exons1
Model size336
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816561.7400706-CDS-M-pyrifera_M_contig67132:252..5881622816561.7400706-CDS-M-pyrifera_M_contig67132:252..588Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67132 253..588 -
1692278047.7591786-CDS-M-pyrifera_M_contig67132:252..5881692278047.7591786-CDS-M-pyrifera_M_contig67132:252..588Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67132 253..588 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67132.16245.1prot_M-pyrifera_M_contig67132.16245.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67132 253..588 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67132.16245.1

>prot_M-pyrifera_M_contig67132.16245.1 ID=prot_M-pyrifera_M_contig67132.16245.1|Name=mRNA_M-pyrifera_M_contig67132.16245.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
LPRYDGHDGRRPLLLAVGSEVFDVTSGWRFYGPDAPYHVFAAKDSTRALT
LGVLEDPENPEAALREPPAEEVKKQVEFYRSKYGFVGVLQSSSHTDGTQS
EGEKEGSGGEL*
back to top

mRNA from alignment at M-pyrifera_M_contig67132:253..588-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67132.16245.1 ID=mRNA_M-pyrifera_M_contig67132.16245.1|Name=mRNA_M-pyrifera_M_contig67132.16245.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig67132:253..588- (Macrocystis pyrifera P11B4 male)
CTTCCTAGGTATGATGGACACGATGGTAGACGTCCTCTTCTCCTGGCAGT AGGAAGCGAAGTATTCGATGTGACGTCTGGTTGGCGGTTCTATGGTCCTG ATGCTCCTTATCATGTCTTTGCTGCCAAAGATTCCACCCGTGCTCTCACT CTTGGTGTTCTCGAAGACCCAGAAAACCCTGAAGCTGCTCTACGAGAACC TCCTGCAGAAGAAGTCAAAAAACAAGTCGAGTTCTACCGATCCAAGTATG GATTTGTGGGAGTTCTCCAGTCTTCCTCGCACACAGATGGCACACAGAGT GAAGGAGAGAAAGAAGGGAGTGGAGGGGAGTTGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig67132:253..588-

>mRNA_M-pyrifera_M_contig67132.16245.1 ID=mRNA_M-pyrifera_M_contig67132.16245.1|Name=mRNA_M-pyrifera_M_contig67132.16245.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig67132:253..588- (Macrocystis pyrifera P11B4 male)
CTTCCTAGGTATGATGGACACGATGGTAGACGTCCTCTTCTCCTGGCAGT
AGGAAGCGAAGTATTCGATGTGACGTCTGGTTGGCGGTTCTATGGTCCTG
ATGCTCCTTATCATGTCTTTGCTGCCAAAGATTCCACCCGTGCTCTCACT
CTTGGTGTTCTCGAAGACCCAGAAAACCCTGAAGCTGCTCTACGAGAACC
TCCTGCAGAAGAAGTCAAAAAACAAGTCGAGTTCTACCGATCCAAGTATG
GATTTGTGGGAGTTCTCCAGTCTTCCTCGCACACAGATGGCACACAGAGT
GAAGGAGAGAAAGAAGGGAGTGGAGGGGAGTTGTGACTTCCTAGGTATGA
TGGACACGATGGTAGACGTCCTCTTCTCCTGGCAGTAGGAAGCGAAGTAT
TCGATGTGACGTCTGGTTGGCGGTTCTATGGTCCTGATGCTCCTTATCAT
GTCTTTGCTGCCAAAGATTCCACCCGTGCTCTCACTCTTGGTGTTCTCGA
AGACCCAGAAAACCCTGAAGCTGCTCTACGAGAACCTCCTGCAGAAGAAG
TCAAAAAACAAGTCGAGTTCTACCGATCCAAGTATGGATTTGTGGGAGTT
CTCCAGTCTTCCTCGCACACAGATGGCACACAGAGTGAAGGAGAGAAAGA
AGGGAGTGGAGGGGAGTTGTGA
back to top