mRNA_M-pyrifera_M_contig67128.16242.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67128.16242.1
Unique NamemRNA_M-pyrifera_M_contig67128.16242.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig67128.16242.1 vs. uniprot
Match: A0A1D2R079_9ARCH (MazF family transcriptional regulator n=1 Tax=Candidatus Altiarchaeales archaeon WOR_SM1_SCG TaxID=1849261 RepID=A0A1D2R079_9ARCH)

HSP 1 Score: 57.4 bits (137), Expect = 1.680e-8
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 1
Query:   28 KHRPALIVQSDAIKS--PDTVLAM----ISSTQSDTSVFLNPDP--KTGIKQPCYVRCEKLYSIEVTAVFGSVGRLSKKTMQEVDACLRNVLGV 285
            K RP LIV  D       D ++A+    IS +   T  F++ D   K GI+ P  VRCE L +I  + +   +G+LS K ++EVDACL++ LG+
Sbjct:   24 KVRPGLIVSKDFNNERLDDAIIAICTSNISRSYEPTQYFIDGDEIRKAGIRIPSVVRCESLLTINKSMIIKVLGKLSDKGIREVDACLKDALGL 117          
BLAST of mRNA_M-pyrifera_M_contig67128.16242.1 vs. uniprot
Match: A0A2E9VKT9_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E9VKT9_9PLAN)

HSP 1 Score: 53.9 bits (128), Expect = 3.870e-7
Identity = 30/94 (31.91%), Postives = 56/94 (59.57%), Query Frame = 1
Query:   34 RPALIVQSDA--IKSPDTVLAMISSTQSD----TSVFLNPD----PKTGIKQPCYVRCEKLYSIEVTAVFGSVGRLSKKTMQEVDACLRNVLGV 285
            RPAL++QSD   ++  +T++A I++  S     T + ++       ++G++ P  V C  L +I  + V   +G LS++TMQ++D CL++ LG+
Sbjct:   26 RPALVIQSDQNNLRMQNTIVAQITTNISRAHLMTQLLIDEQHVDWKQSGLRAPSVVNCASLVTITKSDVVVQIGHLSEETMQQIDECLKDALGM 119          
BLAST of mRNA_M-pyrifera_M_contig67128.16242.1 vs. uniprot
Match: A0A3L7X387_9CHLR (Type II toxin-antitoxin system PemK/MazF family toxin n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3L7X387_9CHLR)

HSP 1 Score: 54.3 bits (129), Expect = 1.030e-6
Identity = 37/96 (38.54%), Postives = 55/96 (57.29%), Query Frame = 1
Query:    1 FPFSDGSAVKHRPALIVQSDAIKS--PDTVLAMISSTQSDTSV----FLNPDPKTGIKQPCYVRCEKLYSIEVTAVFGSVGRLSKKTMQEVDACLR 270
            FPF+D SA K RPA++V S   +S  P+ +LA +SS  S  +      LN     G+ +P +VR  K+ +IE + +   VG+LS + M EV+  LR
Sbjct:   45 FPFTDLSATKTRPAVVVSSTVYQSVRPELLLAYVSSQISKATAPVDYILNDWQSAGLLKPSFVR-PKIAAIEPSLIVHQVGQLSAQDMVEVERRLR 139          
BLAST of mRNA_M-pyrifera_M_contig67128.16242.1 vs. uniprot
Match: A0A7V5DCD6_9BACT (Type II toxin-antitoxin system PemK/MazF family toxin n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7V5DCD6_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 1.330e-6
Identity = 33/101 (32.67%), Postives = 55/101 (54.46%), Query Frame = 1
Query:    1 FPFSDGSAVKHRPALIVQSDAIKSPDTVLAMISS---TQSDTSVFLNPDPK-----TGIKQPCYVRCEKLYSIEVTAVFGSVGRLSKKTMQEVDACLRNVL 279
            FPF+D SA K RPA+IV      +PD ++A ISS   TQ   + F+ PD       TG+K+    + +KL +++ +   G +G ++    +++   LR+ L
Sbjct:   11 FPFTDLSASKRRPAVIVSKVDPSNPDVIVAFISSGVSTQVSAADFVLPDNHPDFGLTGLKKSSVFKMDKLATLDKSIFSGELGNVTPAIFEQLKDKLRSAL 111          
BLAST of mRNA_M-pyrifera_M_contig67128.16242.1 vs. uniprot
Match: A0A1G2Q170_9BACT (Uncharacterized protein n=1 Tax=Candidatus Terrybacteria bacterium RIFCSPLOWO2_02_42_20 TaxID=1802370 RepID=A0A1G2Q170_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 1.830e-6
Identity = 34/93 (36.56%), Postives = 53/93 (56.99%), Query Frame = 1
Query:    1 FPFSDGSAVKHRPALIVQSDAIKSPDTVLAMISSTQSD---TSVFLNPDPK----TGIKQPCYVRCEKLYSIEVTAVFGSVGRLSKKTMQEVD 258
            FPF+D SA K RPA+I+ S A +  D ++A ISS +S    T V LN   K    TG+K    ++  KL +++   + G +G +S  T +E++
Sbjct:   12 FPFTDLSASKVRPAVIISSLA-QGEDIIVAFISSVKSKIQKTDVVLNSYDKDFSKTGLKADSVIKTGKLATLDKKIILGEIGEISADTEKEIN 103          
BLAST of mRNA_M-pyrifera_M_contig67128.16242.1 vs. uniprot
Match: A0A7X4DJ39_9BACT (Type II toxin-antitoxin system PemK/MazF family toxin n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4DJ39_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 3.570e-6
Identity = 31/97 (31.96%), Postives = 53/97 (54.64%), Query Frame = 1
Query:    1 FPFSDGSAVKHRPALIVQSDAIKSP--DTVLAMISSTQSD--TSVFLNPDPKTGIKQPCYVRCEKLYSIEVTAVFGSVGRLSKKTMQEVDACLRNVL 279
            FPF+D +A K RPAL+V S A       T+LAMI+S   +  + VF+    + G+  PC VR  KL++++   +   +G ++ +  Q V +   + +
Sbjct:   13 FPFTDRTATKRRPALVVSSAAFNRDHRQTILAMITSAPGEWPSDVFIRGWREVGLSVPCKVRL-KLFTLDDDLIVRKLGTMTPRDRQAVGSAFSHCI 108          
BLAST of mRNA_M-pyrifera_M_contig67128.16242.1 vs. uniprot
Match: A0A387BN66_9MICO (Type II toxin-antitoxin system PemK/MazF family toxin n=1 Tax=Gryllotalpicola protaetiae TaxID=2419771 RepID=A0A387BN66_9MICO)

HSP 1 Score: 50.8 bits (120), Expect = 5.030e-6
Identity = 33/96 (34.38%), Postives = 52/96 (54.17%), Query Frame = 1
Query:    1 FPFSDGSAVKHRPALIVQSDAIKSPDTVLAMISSTQSDTSVFLNP----DPKTGIKQPCYVRCEKLYSIEVTAVFGSVGRLSKKTMQEVDACLRNV 276
            FPF+DGS +K RPA++V S  +   D V++ I+S     SV L          G+    ++R EKLY++  +AV   +G   ++ + EV A LR +
Sbjct:   14 FPFTDGSRLKRRPAMVVAS--MTRGDAVVSYITSQPQPGSVLLPSRFVSTTGGGLPLDSFIRPEKLYTVGPSAVVRRLGEADRRVVHEVLARLREL 107          
BLAST of mRNA_M-pyrifera_M_contig67128.16242.1 vs. uniprot
Match: A0A524AGC9_9CHLR (Uncharacterized protein n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A524AGC9_9CHLR)

HSP 1 Score: 50.4 bits (119), Expect = 7.670e-6
Identity = 34/100 (34.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query:    1 FPFSDGSAVKHRPALIVQSDAIKSPDTVLAMISSTQSD---TSVFLN-PDPK---TGIKQPCYVRCEKLYSIEVTAVFGSVGRLSKKTMQEVDACLRNVL 279
            +PF+D +AV+ RPAL+V +      D +LA I+S       T + L+  DP     G++    VRC KL ++    + G +G LS + M++V+  LR  L
Sbjct:   14 YPFTDLTAVRRRPALVVPASDRPGDDCILAFITSRTEKVGATDLLLDVADPDFAAMGLRVSSVVRCGKLMTLSHRLLVGRIGYLSDQPMKQVNTRLRVAL 113          
BLAST of mRNA_M-pyrifera_M_contig67128.16242.1 vs. uniprot
Match: A0A7W1ZYS6_9BACT (Type II toxin-antitoxin system PemK/MazF family toxin n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7W1ZYS6_9BACT)

HSP 1 Score: 50.1 bits (118), Expect = 1.080e-5
Identity = 31/102 (30.39%), Postives = 53/102 (51.96%), Query Frame = 1
Query:    1 FPFSDGSAVKHRPALIVQSDAIKSPDTVLAMIS--------STQSDTSVFLNPD-PKTGIKQPCYVRCEKLYSIEVTAVFGSVGRLSKKTMQEVDACLRNVL 279
            FPF+D SA K RPA++V +      D +LA IS        S   +  + +N D   TG+K+    + +KL +++ T + G +G +S     ++DA ++  L
Sbjct:   11 FPFTDLSASKVRPAVVVSNSLRGGADVILAFISTSFDAKDLSPTDELLLDINTDFSATGLKKSSVFKMDKLATVQKTIILGEIGEVSPTLQTKLDAKIKIAL 112          
BLAST of mRNA_M-pyrifera_M_contig67128.16242.1 vs. uniprot
Match: A0A7Y5EZ55_9CHLR (Type II toxin-antitoxin system PemK/MazF family toxin n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A7Y5EZ55_9CHLR)

HSP 1 Score: 50.1 bits (118), Expect = 2.430e-5
Identity = 33/101 (32.67%), Postives = 57/101 (56.44%), Query Frame = 1
Query:    1 FPFSDGSAVKHRPALIVQSDAIKS--PDTVLAMISSTQSDTSVFLN---PDPK-TGIKQPCYVRCEKLYSIEVTAVFGSVGRLSKKTMQEVDACLRNVLGV 285
            FPF++ +A K RPA+IV  +       + ++A +SS  +  +  L+    D K  G+ +P +VR  K+ +IE + V   VG+LS + + EVD C+R  + +
Sbjct:   13 FPFTNLTATKTRPAVIVSGELYHRHRSELLMAYVSSQMAKVNPLLDYSLADWKIAGLPKPSFVR-PKIAAIEASLVVHQVGKLSPRDLAEVDRCIRRAMAL 112          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67128.16242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A1D2R079_9ARCH1.680e-838.30MazF family transcriptional regulator n=1 Tax=Cand... [more]
A0A2E9VKT9_9PLAN3.870e-731.91Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A3L7X387_9CHLR1.030e-638.54Type II toxin-antitoxin system PemK/MazF family to... [more]
A0A7V5DCD6_9BACT1.330e-632.67Type II toxin-antitoxin system PemK/MazF family to... [more]
A0A1G2Q170_9BACT1.830e-636.56Uncharacterized protein n=1 Tax=Candidatus Terryba... [more]
A0A7X4DJ39_9BACT3.570e-631.96Type II toxin-antitoxin system PemK/MazF family to... [more]
A0A387BN66_9MICO5.030e-634.38Type II toxin-antitoxin system PemK/MazF family to... [more]
A0A524AGC9_9CHLR7.670e-634.00Uncharacterized protein n=1 Tax=Anaerolineales bac... [more]
A0A7W1ZYS6_9BACT1.080e-530.39Type II toxin-antitoxin system PemK/MazF family to... [more]
A0A7Y5EZ55_9CHLR2.430e-532.67Type II toxin-antitoxin system PemK/MazF family to... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67128contigM-pyrifera_M_contig67128:1..288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size288
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816561.5848682-CDS-M-pyrifera_M_contig67128:0..2881622816561.5848682-CDS-M-pyrifera_M_contig67128:0..288Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67128 1..288 +
1692278047.6763003-CDS-M-pyrifera_M_contig67128:0..2881692278047.6763003-CDS-M-pyrifera_M_contig67128:0..288Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67128 1..288 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67128.16242.1prot_M-pyrifera_M_contig67128.16242.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67128 1..288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67128.16242.1

>prot_M-pyrifera_M_contig67128.16242.1 ID=prot_M-pyrifera_M_contig67128.16242.1|Name=mRNA_M-pyrifera_M_contig67128.16242.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
FPFSDGSAVKHRPALIVQSDAIKSPDTVLAMISSTQSDTSVFLNPDPKTG
IKQPCYVRCEKLYSIEVTAVFGSVGRLSKKTMQEVDACLRNVLGV*
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mRNA from alignment at M-pyrifera_M_contig67128:1..288+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67128.16242.1 ID=mRNA_M-pyrifera_M_contig67128.16242.1|Name=mRNA_M-pyrifera_M_contig67128.16242.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig67128:1..288+ (Macrocystis pyrifera P11B4 male)
TTTCCCTTCTCTGATGGCTCTGCTGTGAAGCATCGCCCCGCATTGATCGT GCAGTCCGATGCAATCAAATCACCCGACACTGTTCTCGCGATGATTAGCA GTACGCAGAGTGACACAAGTGTCTTTCTGAATCCAGATCCGAAGACTGGC ATCAAACAGCCTTGTTACGTCCGCTGTGAGAAGTTGTACAGCATTGAAGT GACCGCCGTCTTCGGCTCTGTGGGCCGACTCTCAAAGAAGACGATGCAAG AAGTAGATGCGTGCCTCAGGAACGTTCTAGGCGTTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67128:1..288+

>mRNA_M-pyrifera_M_contig67128.16242.1 ID=mRNA_M-pyrifera_M_contig67128.16242.1|Name=mRNA_M-pyrifera_M_contig67128.16242.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig67128:1..288+ (Macrocystis pyrifera P11B4 male)
TTTCCCTTCTCTGATGGCTCTGCTGTGAAGCATCGCCCCGCATTGATCGT
GCAGTCCGATGCAATCAAATCACCCGACACTGTTCTCGCGATGATTAGCA
GTACGCAGAGTGACACAAGTGTCTTTCTGAATCCAGATCCGAAGACTGGC
ATCAAACAGCCTTGTTACGTCCGCTGTGAGAAGTTGTACAGCATTGAAGT
GACCGCCGTCTTCGGCTCTGTGGGCCGACTCTCAAAGAAGACGATGCAAG
AAGTAGATGCGTGCCTCAGGAACGTTCTAGGCGTTTGATTTCCCTTCTCT
GATGGCTCTGCTGTGAAGCATCGCCCCGCATTGATCGTGCAGTCCGATGC
AATCAAATCACCCGACACTGTTCTCGCGATGATTAGCAGTACGCAGAGTG
ACACAAGTGTCTTTCTGAATCCAGATCCGAAGACTGGCATCAAACAGCCT
TGTTACGTCCGCTGTGAGAAGTTGTACAGCATTGAAGTGACCGCCGTCTT
CGGCTCTGTGGGCCGACTCTCAAAGAAGACGATGCAAGAAGTAGATGCGT
GCCTCAGGAACGTTCTAGGCGTTTGA
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