mRNA_M-pyrifera_M_contig67051.16228.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67051.16228.1
Unique NamemRNA_M-pyrifera_M_contig67051.16228.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig67051.16228.1 vs. uniprot
Match: A0A6H5L1F8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F8_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 7.910e-29
Identity = 54/58 (93.10%), Postives = 56/58 (96.55%), Query Frame = 1 
Query:    1 VTKAVWAYIRAESLQDPKDGRKIRNDDKMFRVFKCKTMSMMQIAKKLSPHLKKYSDLV 174
            VTKAVWAYIRAESLQDPKDGRKIRND+KMFRVFKCKTM+MM IAKKLSPHLKK SDLV
Sbjct:  120 VTKAVWAYIRAESLQDPKDGRKIRNDEKMFRVFKCKTMNMMHIAKKLSPHLKKVSDLV 177
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BLAST of mRNA_M-pyrifera_M_contig67051.16228.1 vs. uniprot
Match: D7G2V1_ECTSI (SWIB/MDM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2V1_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.560e-28
Identity = 58/73 (79.45%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:    1 VTKAVWAYIRAESLQDPKDGRKIRNDDKMFRVFKCKTMSMMQIAKKLSPHLKKYSDLVGAEAVGGGGGGKCDS 219
            VTKAVWAYIRAESLQDPKD RKIRNDDKMF VFKCKTM+MM IAKKLSPHLKK SDLV  E+ GG  G + D+
Sbjct:   56 VTKAVWAYIRAESLQDPKDRRKIRNDDKMFPVFKCKTMNMMHIAKKLSPHLKKLSDLV--ESGGGAPGEEVDT 126
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BLAST of mRNA_M-pyrifera_M_contig67051.16228.1 vs. uniprot
Match: A0A1L0BPF9_9ASCO (CIC11C00000000240 n=1 Tax=[Candida] intermedia TaxID=45354 RepID=A0A1L0BPF9_9ASCO)

HSP 1 Score: 59.3 bits (142), Expect = 5.500e-9
Identity = 28/61 (45.90%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:    1 VTKAVWAYIRAESLQDPKDGRKIRNDDKMFRVFKCKTMSMMQIAKKLSPHLKKYSDLVGAE 183
            V K +W YI+   LQDPKD RK++ D+K+  VFK   + M ++ K L  HL K  DLV  E
Sbjct:   95 VVKQIWVYIKEHGLQDPKDKRKVKCDEKLQAVFKKLVVGMFEMNKLLGNHLYKDEDLVDGE 155
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BLAST of mRNA_M-pyrifera_M_contig67051.16228.1 vs. uniprot
Match: UPI001E464649 (SWIB/MDM2 domain-containing protein n=1 Tax=Sphingobium sp. Cam5-1 TaxID=2789327 RepID=UPI001E464649)

HSP 1 Score: 55.5 bits (132), Expect = 1.630e-8
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:    1 VTKAVWAYIRAESLQDPKDGRKIRNDDKMFRVFKCKTMSMMQIAKKLSPHLK 156
            V K +WAYI+   LQ+PKD R+I  DDK+ ++F  K  SM ++ K L+ HLK
Sbjct:   25 VVKKIWAYIKTNDLQNPKDKREILADDKLEKIFGGKKASMFEMNKHLAKHLK 76
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BLAST of mRNA_M-pyrifera_M_contig67051.16228.1 vs. uniprot
Match: A0A6V1PA97_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PA97_HETAK)

HSP 1 Score: 58.2 bits (139), Expect = 3.410e-8
Identity = 26/59 (44.07%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:    1 VTKAVWAYIRAESLQDPKDGRKIRNDDKMFRVFKCKTMSMMQIAKKLSPHLKKYSDLVG 177
            V K +WAYI+   LQ+P+D R+I  DD++  +FK K ++M ++ K L+ H+K Y DL G
Sbjct:  151 VVKQMWAYIKENDLQNPRDKREILCDDQLQAIFKRKKINMFKMNKVLAGHMKTYEDLGG 209
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BLAST of mRNA_M-pyrifera_M_contig67051.16228.1 vs. uniprot
Match: A0A7N2MYS9_QUELO (Uncharacterized protein n=5 Tax=Fagaceae TaxID=3503 RepID=A0A7N2MYS9_QUELO)

HSP 1 Score: 58.2 bits (139), Expect = 3.730e-8
Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 VTKAVWAYIRAESLQDPKDGRKIRNDDKMFRVFKCKTMSMMQIAKKLSPHL 153
            V K VWAYIR  +LQDPK+ R IR D+ +  +F+ KT++M Q+ K LS H+
Sbjct:  151 VVKKVWAYIRENNLQDPKNRRNIRCDESLHTLFRVKTINMFQMNKALSKHI 201
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BLAST of mRNA_M-pyrifera_M_contig67051.16228.1 vs. uniprot
Match: UPI001AE05434 (SWIB/MDM2 domain-containing protein n=1 Tax=Roseomonas sp. SG15 TaxID=2820811 RepID=UPI001AE05434)

HSP 1 Score: 55.5 bits (132), Expect = 3.730e-8
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:    1 VTKAVWAYIRAESLQDPKDGRKIRNDDKMFRVFKCKTMSMMQIAKKLSPHLK 156
            V   VWAYI+A  LQ+PKDGR+I  DDK+  VF    ++M ++ K L+ HLK
Sbjct:   62 VVSKVWAYIKANKLQNPKDGREILADDKLREVFGKDKVTMFEMNKHLAQHLK 113
[Close]
BLAST of mRNA_M-pyrifera_M_contig67051.16228.1 vs. uniprot
Match: A0A1M6N0A0_9PROT (SWIB/MDM2 domain-containing protein n=1 Tax=Roseomonas rosea TaxID=198092 RepID=A0A1M6N0A0_9PROT)

HSP 1 Score: 55.1 bits (131), Expect = 4.940e-8
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:   13 VWAYIRAESLQDPKDGRKIRNDDKMFRVFKCKTMSMMQIAKKLSPHLK 156
            VWAYI+A  LQ+PKDGR+I  DDK+ +VF    ++M ++ K L+ HLK
Sbjct:   63 VWAYIKANKLQNPKDGREILADDKLRKVFGKDKVTMFEMNKHLAQHLK 110
[Close]
BLAST of mRNA_M-pyrifera_M_contig67051.16228.1 vs. uniprot
Match: A0A519E786_PSESP (SWIB/MDM2 domain-containing protein n=1 Tax=Pseudomonas sp. TaxID=306 RepID=A0A519E786_PSESP)

HSP 1 Score: 55.1 bits (131), Expect = 5.160e-8
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:   13 VWAYIRAESLQDPKDGRKIRNDDKMFRVFKCKTMSMMQIAKKLSPHLK 156
            VWAYI+A  LQ+PKDGR+I  DDK+ +VF    ++M ++ K L+ HLK
Sbjct:   65 VWAYIKANKLQNPKDGREILADDKLRKVFGKDKVTMFEMNKHLAQHLK 112
[Close]
BLAST of mRNA_M-pyrifera_M_contig67051.16228.1 vs. uniprot
Match: A0A6P3Z719_ZIZJJ (upstream activation factor subunit spp27-like n=4 Tax=cellular organisms TaxID=131567 RepID=A0A6P3Z719_ZIZJJ)

HSP 1 Score: 55.1 bits (131), Expect = 5.270e-8
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:   13 VWAYIRAESLQDPKDGRKIRNDDKMFRVFKCKTMSMMQIAKKLSPHLK 156
            VWAYI+A  LQ+PKDGR+I  DDK+ +VF    ++M ++ K L+ HLK
Sbjct:   66 VWAYIKANKLQNPKDGREILADDKLRKVFGKDKVTMFEMNKHLAQHLK 113
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67051.16228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1F8_9PHAE7.910e-2993.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2V1_ECTSI1.560e-2879.45SWIB/MDM2 domain-containing protein n=1 Tax=Ectoca... [more]
A0A1L0BPF9_9ASCO5.500e-945.90CIC11C00000000240 n=1 Tax=[Candida] intermedia Tax... [more]
UPI001E4646491.630e-848.08SWIB/MDM2 domain-containing protein n=1 Tax=Sphing... [more]
A0A6V1PA97_HETAK3.410e-844.07Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7N2MYS9_QUELO3.730e-850.98Uncharacterized protein n=5 Tax=Fagaceae TaxID=350... [more]
UPI001AE054343.730e-850.00SWIB/MDM2 domain-containing protein n=1 Tax=Roseom... [more]
A0A1M6N0A0_9PROT4.940e-852.08SWIB/MDM2 domain-containing protein n=1 Tax=Roseom... [more]
A0A519E786_PSESP5.160e-852.08SWIB/MDM2 domain-containing protein n=1 Tax=Pseudo... [more]
A0A6P3Z719_ZIZJJ5.270e-852.08upstream activation factor subunit spp27-like n=4 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67051contigM-pyrifera_M_contig67051:224..442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue4.3e-22
Seed eggNOG ortholog2880.D7G2V1
KEGG koko:K15223
Hectar predicted targeting categoryother localisation
GOsGO:0000120,GO:0000500,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0005730,GO:0006355,GO:0006356,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0044798,GO:0045893,GO:0045935,GO:0045943,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0080090,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.SWIB/MDM2 domain
EggNOG OGsCOG5531@1,KOG1946@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Exons1
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816560.8849776-CDS-M-pyrifera_M_contig67051:223..4421622816560.8849776-CDS-M-pyrifera_M_contig67051:223..442Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67051 224..442 -
1692278047.3547015-CDS-M-pyrifera_M_contig67051:223..4421692278047.3547015-CDS-M-pyrifera_M_contig67051:223..442Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67051 224..442 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67051.16228.1prot_M-pyrifera_M_contig67051.16228.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67051 224..442 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67051.16228.1

>prot_M-pyrifera_M_contig67051.16228.1 ID=prot_M-pyrifera_M_contig67051.16228.1|Name=mRNA_M-pyrifera_M_contig67051.16228.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=73bp
VTKAVWAYIRAESLQDPKDGRKIRNDDKMFRVFKCKTMSMMQIAKKLSPH
LKKYSDLVGAEAVGGGGGGKCDS
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mRNA from alignment at M-pyrifera_M_contig67051:224..442-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67051.16228.1 ID=mRNA_M-pyrifera_M_contig67051.16228.1|Name=mRNA_M-pyrifera_M_contig67051.16228.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=219bp|location=Sequence derived from alignment at M-pyrifera_M_contig67051:224..442- (Macrocystis pyrifera P11B4 male)
GTTACGAAGGCAGTGTGGGCATACATCCGGGCGGAATCCCTGCAGGACCC
CAAGGATGGCCGAAAGATTCGAAACGACGACAAGATGTTCCGGGTGTTCA
AGTGCAAGACGATGAGCATGATGCAAATCGCCAAGAAGCTGTCGCCGCAC
CTCAAGAAGTACTCCGATCTCGTCGGCGCCGAAGCCGTCGGCGGCGGCGG
CGGCGGTAAGTGCGACTCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67051:224..442-

>mRNA_M-pyrifera_M_contig67051.16228.1 ID=mRNA_M-pyrifera_M_contig67051.16228.1|Name=mRNA_M-pyrifera_M_contig67051.16228.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig67051:224..442- (Macrocystis pyrifera P11B4 male)
GTTACGAAGGCAGTGTGGGCATACATCCGGGCGGAATCCCTGCAGGACCC
CAAGGATGGCCGAAAGATTCGAAACGACGACAAGATGTTCCGGGTGTTCA
AGTGCAAGACGATGAGCATGATGCAAATCGCCAAGAAGCTGTCGCCGCAC
CTCAAGAAGTACTCCGATCTCGTCGGCGCCGAAGCCGTCGGCGGCGGCGG
CGGCGGTAAGTGCGACTCAGTTACGAAGGCAGTGTGGGCATACATCCGGG
CGGAATCCCTGCAGGACCCCAAGGATGGCCGAAAGATTCGAAACGACGAC
AAGATGTTCCGGGTGTTCAAGTGCAAGACGATGAGCATGATGCAAATCGC
CAAGAAGCTGTCGCCGCACCTCAAGAAGTACTCCGATCTCGTCGGCGCCG
AAGCCGTCGGCGGCGGCGGCGGCGGTAAGTGCGACTCA
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