mRNA_M-pyrifera_M_contig66874.16187.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66874.16187.1
Unique NamemRNA_M-pyrifera_M_contig66874.16187.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig66874.16187.1 vs. uniprot
Match: A0A418B479_9STRA (DOT1 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B479_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 5.050e-13
Identity = 39/93 (41.94%), Postives = 58/93 (62.37%), Query Frame = 1
Query:   19 ITRLCHQMQHVIGGLGGDGNGLGGVFGELRKGDLVRIVRMLQENAEFGDGSVFLDIGSGLGKPSTIAAMLTPNAKCLGVEVEDVRYKLAMQIL 297
            +T +   +    G LGG+G G G ++GE+ K  + +I+  + E+ E  D SVFLDIGSGLGKP+  AA+    A   GVE+ED R++L++  L
Sbjct:   26 VTSVYQIIHKQTGALGGNGAG-GAIYGEITKNSMAKILEYMMEHCELTDQSVFLDIGSGLGKPNFHAAVSPGVAISYGVELEDQRWELSLHNL 117          
BLAST of mRNA_M-pyrifera_M_contig66874.16187.1 vs. uniprot
Match: A0A485LHH1_9STRA (Aste57867_21414 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LHH1_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 8.100e-13
Identity = 38/90 (42.22%), Postives = 58/90 (64.44%), Query Frame = 1
Query:   19 ITRLCHQMQHVIGGLGGDGNGLGGVFGELRKGDLVRIVRMLQENAEFGDGSVFLDIGSGLGKPSTIAAMLTPNAKCLGVEVEDVRYKLAM 288
            +T +   +    G LGG+G G G ++GE+ K  + +I+  + E+ +F D SVFLDIGSGLGKP+  AA+    A   GVE+ED R++L++
Sbjct:   91 VTTVYQLIHKQTGALGGNGAG-GAIYGEITKNSMGKIIDYMVEHCDFSDQSVFLDIGSGLGKPNFHAAVTPGVAISYGVELEDQRWELSL 179          
BLAST of mRNA_M-pyrifera_M_contig66874.16187.1 vs. uniprot
Match: A0A7R9YFA8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFA8_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.590e-12
Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = 1
Query:   40 MQHVIGGLGGDGNGLGGVFGELRKGDLVRIVRMLQENAEFGDGSVFLDIGSGLGKPSTIAAMLTPNAKC-LGVEVEDVRYKLAM 288
            ++   G LGG+ +G G ++GE+ +G + RIV  L++   F   S F+D+GSGLGKP+   A   P   C  G+E+ED+RYKLAM
Sbjct:  124 LRKATGALGGNADG-GAIYGEITEGSMARIVTALEQYCGFSSRSTFIDVGSGLGKPNVHVAQY-PGVVCSYGIELEDIRYKLAM 205          
BLAST of mRNA_M-pyrifera_M_contig66874.16187.1 vs. uniprot
Match: W4G1V2_9STRA (DOT1 domain-containing protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G1V2_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.220e-12
Identity = 38/93 (40.86%), Postives = 58/93 (62.37%), Query Frame = 1
Query:   19 ITRLCHQMQHVIGGLGGDGNGLGGVFGELRKGDLVRIVRMLQENAEFGDGSVFLDIGSGLGKPSTIAAMLTPNAKCLGVEVEDVRYKLAMQIL 297
            +T +   +    G LGG+G G G ++GE+ K  + +I+  + +N E  D SVFLDIGSGLGKP+  AA+    A   G+E+ED R++L++  L
Sbjct:  100 VTSVYQIIHKQTGALGGNGAG-GAIYGEITKNSMAKILDYMVDNCELTDQSVFLDIGSGLGKPNFHAAVAPGVAISYGIELEDQRWELSLHNL 191          
BLAST of mRNA_M-pyrifera_M_contig66874.16187.1 vs. uniprot
Match: A0A1W0A9U8_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9U8_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.490e-12
Identity = 38/93 (40.86%), Postives = 58/93 (62.37%), Query Frame = 1
Query:   19 ITRLCHQMQHVIGGLGGDGNGLGGVFGELRKGDLVRIVRMLQENAEFGDGSVFLDIGSGLGKPSTIAAMLTPNAKCLGVEVEDVRYKLAMQIL 297
            ++ L   +    G LGG+  G G ++GE+ K  + RI+  +QE+ E G  SVFLDIGSGLGKP+  A++    A   G+E+ED R++L++  L
Sbjct:  260 VSSLYKVIHKQTGALGGNAAG-GAIYGEITKNSMGRILEYMQEHCELGRDSVFLDIGSGLGKPNFHASLAPGVAVSYGIELEDQRWQLSLSNL 351          
BLAST of mRNA_M-pyrifera_M_contig66874.16187.1 vs. uniprot
Match: A0A813BZT5_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BZT5_9DINO)

HSP 1 Score: 69.7 bits (169), Expect = 2.520e-12
Identity = 37/91 (40.66%), Postives = 56/91 (61.54%), Query Frame = 1
Query:   19 ITRLCHQMQHVIGGLGGDGNGLGGVFGELRKGDLVRIVRMLQENAEFGDGSVFLDIGSGLGKPSTIAAMLTPNAK-CLGVEVEDVRYKLAM 288
            + +    +Q   GG+GGDG+  G ++GE+  G + R++    E+A FG  SVF+D+GSGLGKP+  AA +    +  +GVE E  RY L+M
Sbjct:   46 VKQAYSAIQSCTGGVGGDGS-QGPIYGEMTIGSMQRVLDCFVEDAGFGPESVFMDVGSGLGKPNIHAACMPSGCRFSIGVECEPTRYNLSM 135          
BLAST of mRNA_M-pyrifera_M_contig66874.16187.1 vs. uniprot
Match: A0A067CJE8_SAPPC (DOT1 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJE8_SAPPC)

HSP 1 Score: 70.9 bits (172), Expect = 2.620e-12
Identity = 39/95 (41.05%), Postives = 60/95 (63.16%), Query Frame = 1
Query:   13 AGITRLCHQMQHVIGGLGGDGNGLGGVFGELRKGDLVRIVRMLQENAEFGDGSVFLDIGSGLGKPSTIAAMLTPNAKCLGVEVEDVRYKLAMQIL 297
            A I ++ H+     G LGG+  G G ++GE+ +  + +I+  +Q+N E G  SVFLDIGSGLGKP+  A+M    A   G+E+ED R++L++  L
Sbjct:   66 ASIYKVIHK---TTGALGGNAAG-GAIYGEITRNSMGKILEYMQKNCELGRDSVFLDIGSGLGKPNFHASMTPGVAVSYGIELEDQRWQLSLSNL 156          
BLAST of mRNA_M-pyrifera_M_contig66874.16187.1 vs. uniprot
Match: A0A6G0XHK9_9STRA (DOT1 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHK9_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.850e-12
Identity = 38/90 (42.22%), Postives = 56/90 (62.22%), Query Frame = 1
Query:   19 ITRLCHQMQHVIGGLGGDGNGLGGVFGELRKGDLVRIVRMLQENAEFGDGSVFLDIGSGLGKPSTIAAMLTPNAKCLGVEVEDVRYKLAM 288
            +T +   +    G LGG+G G G ++GE+ K  +  I+  + EN E  + SVFLDIGSGLGKP+  AA+    A   GVE+ED R++L++
Sbjct:   87 VTTVYQIIHKQTGALGGNGAG-GAIYGEITKKSMGNIIDFMVENCELNENSVFLDIGSGLGKPNFHAAVTPGVAISYGVELEDQRWELSL 175          
BLAST of mRNA_M-pyrifera_M_contig66874.16187.1 vs. uniprot
Match: A0A1V9ZGI9_9STRA (DOT1 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZGI9_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 5.050e-12
Identity = 37/93 (39.78%), Postives = 58/93 (62.37%), Query Frame = 1
Query:   19 ITRLCHQMQHVIGGLGGDGNGLGGVFGELRKGDLVRIVRMLQENAEFGDGSVFLDIGSGLGKPSTIAAMLTPNAKCLGVEVEDVRYKLAMQIL 297
            ++ L   +    G LGG+  G G ++GE+ K  + +I+  +QE+ E G  SVFLDIGSGLGKP+  A++    A   G+E+ED R++L++  L
Sbjct:   69 VSTLYKVIHKKTGALGGNAAG-GAIYGEITKNSMGKILEYMQEHCELGRDSVFLDIGSGLGKPNFHASLTPGVAVSYGIELEDQRWQLSLSNL 160          
BLAST of mRNA_M-pyrifera_M_contig66874.16187.1 vs. uniprot
Match: A0A8K1CIK2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIK2_PYTOL)

HSP 1 Score: 65.9 bits (159), Expect = 1.880e-10
Identity = 34/93 (36.56%), Postives = 56/93 (60.22%), Query Frame = 1
Query:   19 ITRLCHQMQHVIGGLGGDGNGLGGVFGELRKGDLVRIVRMLQENAEFGDGSVFLDIGSGLGKPSTIAAMLTPNAKCLGVEVEDVRYKLAMQIL 297
            +T +   ++   G LGG+  G G ++GE+ +    R+V  L+EN E  + S+FLD+GSGLGKP+   A+        GVE+E++R+ L++  L
Sbjct:  114 VTEVYKAIRKQTGALGGNAAG-GAIYGEITQSSFQRVVDYLKENCELSEASLFLDVGSGLGKPNMHVAIDPGVEVSYGVELEELRWHLSLHNL 205          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66874.16187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A418B479_9STRA5.050e-1341.94DOT1 domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A485LHH1_9STRA8.100e-1342.22Aste57867_21414 protein n=1 Tax=Aphanomyces stella... [more]
A0A7R9YFA8_9STRA1.590e-1244.05Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W4G1V2_9STRA2.220e-1240.86DOT1 domain-containing protein n=9 Tax=Aphanomyces... [more]
A0A1W0A9U8_9STRA2.490e-1240.86Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A813BZT5_9DINO2.520e-1240.66Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A067CJE8_SAPPC2.620e-1241.05DOT1 domain-containing protein n=2 Tax=Saprolegnia... [more]
A0A6G0XHK9_9STRA2.850e-1242.22DOT1 domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A1V9ZGI9_9STRA5.050e-1239.78DOT1 domain-containing protein n=1 Tax=Achlya hypo... [more]
A0A8K1CIK2_PYTOL1.880e-1036.56Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66874contigM-pyrifera_M_contig66874:6..302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue2.5e-09
Seed eggNOG ortholog112098.XP_008618171.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Histone methylation protein DOT1
EggNOG OGs2AVA3@1,2RZVU@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816558.9357562-CDS-M-pyrifera_M_contig66874:5..3021622816558.9357562-CDS-M-pyrifera_M_contig66874:5..302Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66874 6..302 -
1692278046.2954195-CDS-M-pyrifera_M_contig66874:5..3021692278046.2954195-CDS-M-pyrifera_M_contig66874:5..302Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66874 6..302 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66874.16187.1prot_M-pyrifera_M_contig66874.16187.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66874 6..302 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66874.16187.1

>prot_M-pyrifera_M_contig66874.16187.1 ID=prot_M-pyrifera_M_contig66874.16187.1|Name=mRNA_M-pyrifera_M_contig66874.16187.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
VDEPAGITRLCHQMQHVIGGLGGDGNGLGGVFGELRKGDLVRIVRMLQEN
AEFGDGSVFLDIGSGLGKPSTIAAMLTPNAKCLGVEVEDVRYKLAMQIL
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mRNA from alignment at M-pyrifera_M_contig66874:6..302-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66874.16187.1 ID=mRNA_M-pyrifera_M_contig66874.16187.1|Name=mRNA_M-pyrifera_M_contig66874.16187.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig66874:6..302- (Macrocystis pyrifera P11B4 male)
GTTGATGAACCCGCAGGAATTACTCGGTTGTGTCATCAAATGCAACATGT CATTGGTGGTCTTGGAGGCGATGGAAATGGCCTTGGGGGAGTGTTTGGAG AATTGAGAAAAGGTGATCTTGTTCGTATTGTTCGGATGCTACAAGAAAAC GCAGAGTTTGGAGATGGTAGTGTGTTCTTGGATATTGGATCTGGTCTTGG AAAACCATCAACCATTGCAGCCATGCTTACACCAAACGCAAAATGTTTAG GGGTGGAGGTAGAGGATGTTCGTTACAAACTTGCGATGCAAATCTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66874:6..302-

>mRNA_M-pyrifera_M_contig66874.16187.1 ID=mRNA_M-pyrifera_M_contig66874.16187.1|Name=mRNA_M-pyrifera_M_contig66874.16187.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig66874:6..302- (Macrocystis pyrifera P11B4 male)
GTTGATGAACCCGCAGGAATTACTCGGTTGTGTCATCAAATGCAACATGT
CATTGGTGGTCTTGGAGGCGATGGAAATGGCCTTGGGGGAGTGTTTGGAG
AATTGAGAAAAGGTGATCTTGTTCGTATTGTTCGGATGCTACAAGAAAAC
GCAGAGTTTGGAGATGGTAGTGTGTTCTTGGATATTGGATCTGGTCTTGG
AAAACCATCAACCATTGCAGCCATGCTTACACCAAACGCAAAATGTTTAG
GGGTGGAGGTAGAGGATGTTCGTTACAAACTTGCGATGCAAATCTTGGTT
GATGAACCCGCAGGAATTACTCGGTTGTGTCATCAAATGCAACATGTCAT
TGGTGGTCTTGGAGGCGATGGAAATGGCCTTGGGGGAGTGTTTGGAGAAT
TGAGAAAAGGTGATCTTGTTCGTATTGTTCGGATGCTACAAGAAAACGCA
GAGTTTGGAGATGGTAGTGTGTTCTTGGATATTGGATCTGGTCTTGGAAA
ACCATCAACCATTGCAGCCATGCTTACACCAAACGCAAAATGTTTAGGGG
TGGAGGTAGAGGATGTTCGTTACAAACTTGCGATGCAAATCTTG
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