mRNA_M-pyrifera_M_contig66870.16186.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig66870.16186.1
Unique Name	mRNA_M-pyrifera_M_contig66870.16186.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig66870.16186.1 vs. uniprot
Match: D7G3V5_ECTSI (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3V5_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 4.700e-19
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 1

Query:    1 HEPLVVALTGSTGTGKTETAWALAESLLTKRCRIAGGTKDIPRGLLVL 144
            +EPLVVALTGSTGTGKTETAW LA++LLTKRCRI GGT+DIPRGLLVL
Sbjct:  101 YEPLVVALTGSTGTGKTETAWVLADALLTKRCRITGGTRDIPRGLLVL 148

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BLAST of mRNA_M-pyrifera_M_contig66870.16186.1 vs. uniprot
Match: A0A485KDB2_9STRA (Aste57867_2684 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDB2_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 4.440e-7
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 1

Query:    1 HEPLVVALTGSTGTGKTETAWALAESLLTKRCRIAGGTKDIPRGLLVLK 147
            H PLV+A+TG TGTGKTET+  LAE L   R R+    K++P GLLV +
Sbjct:  124 HAPLVLAITGPTGTGKTETSNLLAEGLFKHRKRLQHSEKEVPSGLLVFR 172

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BLAST of mRNA_M-pyrifera_M_contig66870.16186.1 vs. uniprot
Match: A0A067D1W6_SAPPC (AAA domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D1W6_SAPPC)

HSP 1 Score: 51.2 bits (121), Expect = 3.980e-6
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 1

Query:    1 HEPLVVALTGSTGTGKTETAWALAESLLTKRCRIAGGTKDIPRGLLVLK 147
            H PLV+A+TG TGTGKTET+  +AE L  +R ++    K +P GLLV +
Sbjct:  103 HGPLVMAITGPTGTGKTETSTLIAEGLFRRRRKLEHSEKLVPTGLLVFR 151

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BLAST of mRNA_M-pyrifera_M_contig66870.16186.1 vs. uniprot
Match: A0A2D4BEI3_PYTIN (AAA domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BEI3_PYTIN)

HSP 1 Score: 50.8 bits (120), Expect = 5.440e-6
Identity = 24/47 (51.06%), Postives = 35/47 (74.47%), Query Frame = 1

Query:    7 PLVVALTGSTGTGKTETAWALAESLLTKRCRIAGGTKDIPRGLLVLK 147
            PLV+A+TG TGTGKTET++ LAESL  +  +++ G + +  GLLV +
Sbjct:   75 PLVLAITGPTGTGKTETSYLLAESLFKRSRKLSNGDRTVASGLLVFR 121

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BLAST of mRNA_M-pyrifera_M_contig66870.16186.1 vs. uniprot
Match: A0A7S3HEH0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HEH0_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.020e-5
Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 1

Query:    4 EPLVVALTGSTGTGKTETAWALAESLLTKRCRIAGGTKDIPRGLLVLK 147
            EPLV+ALTG TG GK+ET++ LAE  L KR ++    K  P GLL L+
Sbjct:  101 EPLVLALTGPTGVGKSETSFRLAEGALGKRSKVGKSLKYRPNGLLALR 148

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BLAST of mRNA_M-pyrifera_M_contig66870.16186.1 vs. uniprot
Match: A0A836C741_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C741_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.030e-5
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 1

Query:    1 HEPLVVALTGSTGTGKTETAWALAESLLTKRCRIAGGTKDIPRGLL 138
             +PLV+ALTG TG GKTETAW +AE+LLTKR         +P G+L
Sbjct:  650 RQPLVLALTGQTGVGKTETAWQVAEALLTKR------QHGVPTGML 689

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BLAST of mRNA_M-pyrifera_M_contig66870.16186.1 vs. uniprot
Match: A0A6A5A657_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A657_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.120e-5
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 1

Query:    1 HEPLVVALTGSTGTGKTETAWALAESLLTKRCRIAGGTKDIPRGLLVLK 147
            H PLV+ALTG TGTGKTE++  LAE+L     R+    KD P GLLV +
Sbjct:  113 HAPLVLALTGPTGTGKTESSNLLAEALFKWTKRLDHSDKDSPSGLLVFR 161

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BLAST of mRNA_M-pyrifera_M_contig66870.16186.1 vs. uniprot
Match: A0A3L6V0S8_9STRA (AAA domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6V0S8_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.370e-5
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 1

Query:    1 HEPLVVALTGSTGTGKTETAWALAESLLTKRCRIAGGTKDIPRGLLVLK 147
            H PLV+ALTG TGTGKTE++  LAE+L     R+    KD P GLLV +
Sbjct:  113 HAPLVLALTGPTGTGKTESSNLLAEALFKWTKRLDHSDKDSPSGLLVFR 161

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BLAST of mRNA_M-pyrifera_M_contig66870.16186.1 vs. uniprot
Match: W4FI45_9STRA (AAA domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FI45_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.400e-5
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 1

Query:    1 HEPLVVALTGSTGTGKTETAWALAESLLTKRCRIAGGTKDIPRGLLVLK 147
            H PLV+ALTG TGTGKTE++  LAE+L     R+    KD P GLLV +
Sbjct:  140 HAPLVLALTGPTGTGKTESSNLLAEALFKWTKRLDHSDKDSPSGLLVFR 188

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BLAST of mRNA_M-pyrifera_M_contig66870.16186.1 vs. uniprot
Match: A0A3R7YYJ7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7YYJ7_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.410e-5
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 1

Query:    1 HEPLVVALTGSTGTGKTETAWALAESLLTKRCRIAGGTKDIPRGLLVLK 147
            H PLV+ALTG TGTGKTE++  LAE+L     R+    KD P GLLV +
Sbjct:  111 HAPLVLALTGPTGTGKTESSNLLAEALFKWTKRLDHSDKDSPSGLLVFR 159

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig66870.16186.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig66870.16186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21


Match Name	E-value	Identity	Description
D7G3V5_ECTSI	4.700e-19	87.50	AAA domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A485KDB2_9STRA	4.440e-7	55.10	Aste57867_2684 protein n=1 Tax=Aphanomyces stellat...	[more]
A0A067D1W6_SAPPC	3.980e-6	51.02	AAA domain-containing protein n=2 Tax=Saprolegnia ...	[more]
A0A2D4BEI3_PYTIN	5.440e-6	51.06	AAA domain-containing protein (Fragment) n=1 Tax=P...	[more]
A0A7S3HEH0_9STRA	1.020e-5	54.17	Hypothetical protein n=1 Tax=Spumella elongata Tax...	[more]
A0A836C741_9STRA	1.030e-5	56.52	P-loop containing nucleoside triphosphate hydrolas...	[more]
A0A6A5A657_9STRA	1.120e-5	55.10	Uncharacterized protein n=1 Tax=Aphanomyces astaci...	[more]
A0A3L6V0S8_9STRA	1.370e-5	55.10	AAA domain-containing protein (Fragment) n=1 Tax=A...	[more]
W4FI45_9STRA	1.400e-5	55.10	AAA domain-containing protein n=7 Tax=Aphanomyces ...	[more]
A0A3R7YYJ7_9STRA	1.410e-5	55.10	Uncharacterized protein n=1 Tax=Aphanomyces astaci...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig66870	contig	M-pyrifera_M_contig66870:1056..1205 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	89.7
Seed ortholog evalue	4.1e-16
Seed eggNOG ortholog	2880.D7G3V5
Preferred name	TOR4A
Hectar predicted targeting category	no signal peptide or anchor
GOs	GO:0002576,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006887,GO:0008150,GO:0009987,GO:0012505,GO:0016192,GO:0030141,GO:0031091,GO:0031093,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032940,GO:0034774,GO:0043226,GO:0043227,GO:0043229,GO:0043233,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0046903,GO:0051179,GO:0051234,GO:0060205,GO:0070013,GO:0097708,GO:0099503
EggNOG free text desc.	chaperone cofactor-dependent protein refolding
EggNOG OGs	KOG2170@1,KOG2170@2759
COG Functional cat.	O
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	150
Cds size	150
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816558.8968806-CDS-M-pyrifera_M_contig66870:1055..1205	1622816558.8968806-CDS-M-pyrifera_M_contig66870:1055..1205	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig66870 1056..1205 -
1692278046.2824912-CDS-M-pyrifera_M_contig66870:1055..1205	1692278046.2824912-CDS-M-pyrifera_M_contig66870:1055..1205	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig66870 1056..1205 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig66870.16186.1	prot_M-pyrifera_M_contig66870.16186.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig66870 1056..1205 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig66870:1056..1205-
coding sequence from alignment at M-pyrifera_M_contig66870:1056..1205-

protein sequence of mRNA_M-pyrifera_M_contig66870.16186.1

>prot_M-pyrifera_M_contig66870.16186.1 ID=prot_M-pyrifera_M_contig66870.16186.1|Name=mRNA_M-pyrifera_M_contig66870.16186.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=50bp
HEPLVVALTGSTGTGKTETAWALAESLLTKRCRIAGGTKDIPRGLLVLK*

mRNA from alignment at M-pyrifera_M_contig66870:1056..1205-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig66870.16186.1 ID=mRNA_M-pyrifera_M_contig66870.16186.1|Name=mRNA_M-pyrifera_M_contig66870.16186.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=150bp|location=Sequence derived from alignment at M-pyrifera_M_contig66870:1056..1205- (Macrocystis pyrifera P11B4 male)
CACGAGCCGCTGGTTGTTGCGCTGACGGGGTCCACGGGGACCGGGAAGAC
GGAGACGGCGTGGGCGCTCGCGGAGAGCTTGCTGACGAAGAGGTGCCGGA
TAGCCGGGGGCACCAAAGACATCCCTCGAGGGCTGCTCGTGCTCAAGTAA

Coding sequence (CDS) from alignment at M-pyrifera_M_contig66870:1056..1205-

>mRNA_M-pyrifera_M_contig66870.16186.1 ID=mRNA_M-pyrifera_M_contig66870.16186.1|Name=mRNA_M-pyrifera_M_contig66870.16186.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig66870:1056..1205- (Macrocystis pyrifera P11B4 male)
CACGAGCCGCTGGTTGTTGCGCTGACGGGGTCCACGGGGACCGGGAAGAC
GGAGACGGCGTGGGCGCTCGCGGAGAGCTTGCTGACGAAGAGGTGCCGGA
TAGCCGGGGGCACCAAAGACATCCCTCGAGGGCTGCTCGTGCTCAAGTAA
CACGAGCCGCTGGTTGTTGCGCTGACGGGGTCCACGGGGACCGGGAAGAC
GGAGACGGCGTGGGCGCTCGCGGAGAGCTTGCTGACGAAGAGGTGCCGGA
TAGCCGGGGGCACCAAAGACATCCCTCGAGGGCTGCTCGTGCTCAAGTAA