mRNA_M-pyrifera_M_contig66689.16156.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig66689.16156.1
Unique Name	mRNA_M-pyrifera_M_contig66689.16156.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig66689.16156.1 vs. uniprot
Match: A0A812U6W0_9DINO (Tubulin beta chain n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812U6W0_9DINO)

HSP 1 Score: 231 bits (590), Expect = 1.840e-75
Identity = 109/114 (95.61%), Postives = 112/114 (98.25%), Query Frame = -1

Query:    3 PDRIMMTFSVCPSPKVSDTVVEPYNATLSVHQIVENTDESFVLDNEALYDICFRTLKLTTPTYGDLNHLVSMCMSGVTASLRFPGQLNCDLRKIAVNLIPFPRLHFFMVGFAPL 344
            PDR+MMTFSVCPSPKVSDTVVEPYNATLSVHQIVENTDESFVLDNEALYDICFRTLKLTTPTYGDLNHLV MCMSGVT+SLRFPGQLNCDLRKIAVNL+PFPRLHFFM GFAPL
Sbjct:   95 PDRVMMTFSVCPSPKVSDTVVEPYNATLSVHQIVENTDESFVLDNEALYDICFRTLKLTTPTYGDLNHLVCMCMSGVTSSLRFPGQLNCDLRKIAVNLVPFPRLHFFMTGFAPL 208

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BLAST of mRNA_M-pyrifera_M_contig66689.16156.1 vs. uniprot
Match: TBB3_OOMCK (Tubulin beta-3 chain n=107 Tax=Stramenopiles TaxID=33634 RepID=TBB3_OOMCK)

HSP 1 Score: 231 bits (590), Expect = 1.060e-72
Identity = 109/114 (95.61%), Postives = 113/114 (99.12%), Query Frame = -1

Query:    3 PDRIMMTFSVCPSPKVSDTVVEPYNATLSVHQIVENTDESFVLDNEALYDICFRTLKLTTPTYGDLNHLVSMCMSGVTASLRFPGQLNCDLRKIAVNLIPFPRLHFFMVGFAPL 344
            PDR+MMTFSVCPSPKVSDTVVEPYNATLSVHQIVENTDESFVLDNEALYDICFRTLKLTTPTYGDLNHLV +CMSGVT+SLRFPGQLNCDLRK+AVNLIPFPRLHFFMVGFAPL
Sbjct:  160 PDRVMMTFSVCPSPKVSDTVVEPYNATLSVHQIVENTDESFVLDNEALYDICFRTLKLTTPTYGDLNHLVCVCMSGVTSSLRFPGQLNCDLRKVAVNLIPFPRLHFFMVGFAPL 273

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BLAST of mRNA_M-pyrifera_M_contig66689.16156.1 vs. uniprot
Match: A0A7S1GQW3_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GQW3_CYCTE)

HSP 1 Score: 215 bits (548), Expect = 5.240e-69
Identity = 101/110 (91.82%), Postives = 107/110 (97.27%), Query Frame = -1

Query:    3 MMTFSVCPSPKVSDTVVEPYNATLSVHQIVENTDESFVLDNEALYDICFRTLKLTTPTYGDLNHLVSMCMSGVTASLRFPGQLNCDLRKIAVNLIPFPRLHFFMVGFAPL 332
            M+TFSVCPSPKVSDTVVEPYNATLSVHQ+VEN+DE  VLDNEALYDICFRTLKLTTPTYGDLNHLV +CMSGVTASLRFPGQLNCDLRKI+VNLIPFPRLHFFM+GFAPL
Sbjct:    1 MLTFSVCPSPKVSDTVVEPYNATLSVHQLVENSDEVMVLDNEALYDICFRTLKLTTPTYGDLNHLVCICMSGVTASLRFPGQLNCDLRKISVNLIPFPRLHFFMIGFAPL 110

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BLAST of mRNA_M-pyrifera_M_contig66689.16156.1 vs. uniprot
Match: C0SKC9_9STRA (Tubulin beta chain (Fragment) n=63 Tax=Stramenopiles TaxID=33634 RepID=C0SKC9_9STRA)

HSP 1 Score: 216 bits (549), Expect = 1.140e-67
Identity = 101/114 (88.60%), Postives = 107/114 (93.86%), Query Frame = -1

Query:    3 PDRIMMTFSVCPSPKVSDTVVEPYNATLSVHQIVENTDESFVLDNEALYDICFRTLKLTTPTYGDLNHLVSMCMSGVTASLRFPGQLNCDLRKIAVNLIPFPRLHFFMVGFAPL 344
            PDR+M+TFSVCPSPKVSDTVVEPYNATLSVHQ+VEN DE  VLDNEALYDICFRTLKLTTPTYGDLNHLV  CMSGVT+ LRFPGQLN DLRK+AVNLIPFPRLHFFM+GFAPL
Sbjct:  117 PDRVMLTFSVCPSPKVSDTVVEPYNATLSVHQLVENADEVMVLDNEALYDICFRTLKLTTPTYGDLNHLVCACMSGVTSCLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPL 230

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BLAST of mRNA_M-pyrifera_M_contig66689.16156.1 vs. uniprot
Match: A0A1A8VF40_NOTFU (Tubulin beta chain (Fragment) n=2 Tax=Cyprinodontiformes TaxID=28738 RepID=A0A1A8VF40_NOTFU)

HSP 1 Score: 209 bits (533), Expect = 1.760e-67
Identity = 98/114 (85.96%), Postives = 107/114 (93.86%), Query Frame = -1

Query:    3 PDRIMMTFSVCPSPKVSDTVVEPYNATLSVHQIVENTDESFVLDNEALYDICFRTLKLTTPTYGDLNHLVSMCMSGVTASLRFPGQLNCDLRKIAVNLIPFPRLHFFMVGFAPL 344
            PDRIM +FS+ PSPKVSDTVVEPYNATLSVHQ++ENTDE+F +DNEALYDICFRTLKLTTPTYGDLNHLVSM MSGVT SLRFPGQLN DLRK+AVN++PFPRLHFFM GFAPL
Sbjct:   61 PDRIMNSFSIMPSPKVSDTVVEPYNATLSVHQLLENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMTMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 174

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BLAST of mRNA_M-pyrifera_M_contig66689.16156.1 vs. uniprot
Match: A0A7S2D1V5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D1V5_9STRA)

HSP 1 Score: 209 bits (532), Expect = 3.040e-67
Identity = 97/114 (85.09%), Postives = 104/114 (91.23%), Query Frame = -1

Query:    3 PDRIMMTFSVCPSPKVSDTVVEPYNATLSVHQIVENTDESFVLDNEALYDICFRTLKLTTPTYGDLNHLVSMCMSGVTASLRFPGQLNCDLRKIAVNLIPFPRLHFFMVGFAPL 344
            PDR+M TFSV PSPKVSDTVVEPYNATLSVHQ+VEN D+ F LDNEALYDICFRTLKLTTPTYGDLNHLVS  M G T SLRFPGQLNCDLRK+AVN++PFPRLHFFM+GFAPL
Sbjct:    4 PDRVMSTFSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFALDNEALYDICFRTLKLTTPTYGDLNHLVSAAMCGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMMGFAPL 117

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BLAST of mRNA_M-pyrifera_M_contig66689.16156.1 vs. uniprot
Match: A2SWP0_9STRA (Tubulin beta chain (Fragment) n=1 Tax=Peronospora aestivalis TaxID=162107 RepID=A2SWP0_9STRA)

HSP 1 Score: 209 bits (533), Expect = 4.220e-67
Identity = 99/114 (86.84%), Postives = 104/114 (91.23%), Query Frame = -1

Query:    3 PDRIMMTFSVCPSPKVSDTVVEPYNATLSVHQIVENTDESFVLDNEALYDICFRTLKLTTPTYGDLNHLVSMCMSGVTASLRFPGQLNCDLRKIAVNLIPFPRLHFFMVGFAPL 344
            PDRIM T+SVCPSPKVSDTVVEPYNATLSVHQ+VEN DE   LDNEALYDICFRTLKLTTPTYGDLNHLV   MSG+T SLRFPGQLN DLRK+AVNLIPFPRLHFFM+GFAPL
Sbjct:   44 PDRIMCTYSVCPSPKVSDTVVEPYNATLSVHQLVENADEVMCLDNEALYDICFRTLKLTTPTYGDLNHLVCAAMSGITTSLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPL 157

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BLAST of mRNA_M-pyrifera_M_contig66689.16156.1 vs. uniprot
Match: A5PGS4_PSACO (Beta tubulin (Fragment) n=1 Tax=Psammocora contigua TaxID=213643 RepID=A5PGS4_PSACO)

HSP 1 Score: 207 bits (527), Expect = 4.750e-67
Identity = 98/114 (85.96%), Postives = 105/114 (92.11%), Query Frame = -1

Query:    3 PDRIMMTFSVCPSPKVSDTVVEPYNATLSVHQIVENTDESFVLDNEALYDICFRTLKLTTPTYGDLNHLVSMCMSGVTASLRFPGQLNCDLRKIAVNLIPFPRLHFFMVGFAPL 344
            PDRIM TFSV PSPKVSDTVVEPYNATLSVHQ+VENTDE++ +DNEALYDICFRTLKLTTPTYGDLNHLVS  MSGVT  LRFPGQLN DLRK+AVN++PFPRLHFFM GFAPL
Sbjct:   13 PDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 126

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BLAST of mRNA_M-pyrifera_M_contig66689.16156.1 vs. uniprot
Match: A5PGR6_PSASE (Beta tubulin (Fragment) n=1 Tax=Psammocora stellata TaxID=46710 RepID=A5PGR6_PSASE)

HSP 1 Score: 207 bits (527), Expect = 4.750e-67
Identity = 98/114 (85.96%), Postives = 105/114 (92.11%), Query Frame = -1

Query:    3 PDRIMMTFSVCPSPKVSDTVVEPYNATLSVHQIVENTDESFVLDNEALYDICFRTLKLTTPTYGDLNHLVSMCMSGVTASLRFPGQLNCDLRKIAVNLIPFPRLHFFMVGFAPL 344
            PDRIM TFSV PSPKVSDTVVEPYNATLSVHQ+VENTDE++ +DNEALYDICFRTLKLTTPTYGDLNHLVS  MSGVT  LRFPGQLN DLRK+AVN++PFPRLHFFM GFAPL
Sbjct:   13 PDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 126

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BLAST of mRNA_M-pyrifera_M_contig66689.16156.1 vs. uniprot
Match: Q761N1_9CNID (Beta tubulin (Fragment) n=3 Tax=Eumetazoa TaxID=6072 RepID=Q761N1_9CNID)

HSP 1 Score: 207 bits (527), Expect = 4.910e-67
Identity = 98/114 (85.96%), Postives = 105/114 (92.11%), Query Frame = -1

Query:    3 PDRIMMTFSVCPSPKVSDTVVEPYNATLSVHQIVENTDESFVLDNEALYDICFRTLKLTTPTYGDLNHLVSMCMSGVTASLRFPGQLNCDLRKIAVNLIPFPRLHFFMVGFAPL 344
            PDRIM TFSV PSPKVSDTVVEPYNATLSVHQ+VENTDE++ +DNEALYDICFRTLKLTTPTYGDLNHLVS  MSGVT  LRFPGQLN DLRK+AVN++PFPRLHFFM GFAPL
Sbjct:   14 PDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 127

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig66689.16156.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig66689.16156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A812U6W0_9DINO	1.840e-75	95.61	Tubulin beta chain n=1 Tax=Symbiodinium sp. KB8 Ta...	[more]
TBB3_OOMCK	1.060e-72	95.61	Tubulin beta-3 chain n=107 Tax=Stramenopiles TaxID...	[more]
A0A7S1GQW3_CYCTE	5.240e-69	91.82	Hypothetical protein (Fragment) n=1 Tax=Cyclophora...	[more]
C0SKC9_9STRA	1.140e-67	88.60	Tubulin beta chain (Fragment) n=63 Tax=Stramenopil...	[more]
A0A1A8VF40_NOTFU	1.760e-67	85.96	Tubulin beta chain (Fragment) n=2 Tax=Cyprinodonti...	[more]
A0A7S2D1V5_9STRA	3.040e-67	85.09	Hypothetical protein (Fragment) n=1 Tax=Florenciel...	[more]
A2SWP0_9STRA	4.220e-67	86.84	Tubulin beta chain (Fragment) n=1 Tax=Peronospora ...	[more]
A5PGS4_PSACO	4.750e-67	85.96	Beta tubulin (Fragment) n=1 Tax=Psammocora contigu...	[more]
A5PGR6_PSASE	4.750e-67	85.96	Beta tubulin (Fragment) n=1 Tax=Psammocora stellat...	[more]
Q761N1_9CNID	4.910e-67	85.96	Beta tubulin (Fragment) n=3 Tax=Eumetazoa TaxID=60...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig66689	contig	M-pyrifera_M_contig66689:5..348 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Viridiplantae
Seed ortholog score	99.8
Seed ortholog evalue	8.3e-19
Seed eggNOG ortholog	4530.OS03T0105633-00
Hectar predicted targeting category	other localisation
EggNOG OGs	2APZE@1,2RZHV@2759,38AIJ@33090,3GSG2@35493,3IRBK@38820,3M7B7@4447
Best tax level	Poales
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	345
Cds size	315
Stop	0
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816557.097087-UTR-M-pyrifera_M_contig66689:4..33	1622816557.097087-UTR-M-pyrifera_M_contig66689:4..33	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig66689 5..33 +
1692278045.2428677-UTR-M-pyrifera_M_contig66689:4..33	1692278045.2428677-UTR-M-pyrifera_M_contig66689:4..33	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig66689 5..33 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816557.108807-CDS-M-pyrifera_M_contig66689:33..348	1622816557.108807-CDS-M-pyrifera_M_contig66689:33..348	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig66689 34..348 +
1692278045.2668824-CDS-M-pyrifera_M_contig66689:33..348	1692278045.2668824-CDS-M-pyrifera_M_contig66689:33..348	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig66689 34..348 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig66689.16156.1	prot_M-pyrifera_M_contig66689.16156.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig66689 34..348 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig66689:5..348+
coding sequence from alignment at M-pyrifera_M_contig66689:5..348+

protein sequence of mRNA_M-pyrifera_M_contig66689.16156.1

>prot_M-pyrifera_M_contig66689.16156.1 ID=prot_M-pyrifera_M_contig66689.16156.1|Name=mRNA_M-pyrifera_M_contig66689.16156.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
MKTREWDKVDSDLAQVTVELTWEAEGCSDTRHAHRHEMVEVTVGWGGKLE
GTEANVIKGFVVEHKGFIRVLHNLMDREGSVVRFHNGVRHLWGWADGESH
HDTVW

mRNA from alignment at M-pyrifera_M_contig66689:5..348+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig66689.16156.1 ID=mRNA_M-pyrifera_M_contig66689.16156.1|Name=mRNA_M-pyrifera_M_contig66689.16156.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=344bp|location=Sequence derived from alignment at M-pyrifera_M_contig66689:5..348+ (Macrocystis pyrifera P11B4 male)
GTGAGTGGTGCGAAACCAACCATGAAGAAATGAAGACGAGGGAATGGGAT
AAGGTTGACAGCGATCTTGCGCAAGTCACAGTTGAGCTGACCTGGGAAGC
GGAGGGATGCAGTGACACCAGACATGCACATAGACACGAGATGGTTGAGG
TCACCGTAGGTTGGGGTGGTAAGCTTGAGGGTACGGAAGCAAATGTCATA
AAGGGCTTCGTTGTCGAGCACAAAGGATTCATCCGTGTTCTCCACAATCT
GATGGACAGAGAGGGTAGCGTTGTAAGGTTCCACAACGGTGTCAGACACC
TTTGGGGATGGGCAGACGGAGAAAGTCATCATGATACGGTCTGG

Coding sequence (CDS) from alignment at M-pyrifera_M_contig66689:5..348+

>mRNA_M-pyrifera_M_contig66689.16156.1 ID=mRNA_M-pyrifera_M_contig66689.16156.1|Name=mRNA_M-pyrifera_M_contig66689.16156.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig66689:5..348+ (Macrocystis pyrifera P11B4 male)
ATGAAGACGAGGGAATGGGATAAGGTTGACAGCGATCTTGCGCAAGTCAC
AGTTGAGCTGACCTGGGAAGCGGAGGGATGCAGTGACACCAGACATGCAC
ATAGACACGAGATGGTTGAGGTCACCGTAGGTTGGGGTGGTAAGCTTGAG
GGTACGGAAGCAAATGTCATAAAGGGCTTCGTTGTCGAGCACAAAGGATT
CATCCGTGTTCTCCACAATCTGATGGACAGAGAGGGTAGCGTTGTAAGGT
TCCACAACGGTGTCAGACACCTTTGGGGATGGGCAGACGGAGAAAGTCAT
CATGATACGGTCTGGATGAAGACGAGGGAATGGGATAAGGTTGACAGCGA
TCTTGCGCAAGTCACAGTTGAGCTGACCTGGGAAGCGGAGGGATGCAGTG
ACACCAGACATGCACATAGACACGAGATGGTTGAGGTCACCGTAGGTTGG
GGTGGTAAGCTTGAGGGTACGGAAGCAAATGTCATAAAGGGCTTCGTTGT
CGAGCACAAAGGATTCATCCGTGTTCTCCACAATCTGATGGACAGAGAGG
GTAGCGTTGTAAGGTTCCACAACGGTGTCAGACACCTTTGGGGATGGGCA
GACGGAGAAAGTCATCATGATACGGTCTGG