mRNA_M-pyrifera_M_contig66628.16150.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66628.16150.1
Unique NamemRNA_M-pyrifera_M_contig66628.16150.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig66628.16150.1 vs. uniprot
Match: J3L2B6_ORYBR (Uncharacterized protein n=2 Tax=Oryza brachyantha TaxID=4533 RepID=J3L2B6_ORYBR)

HSP 1 Score: 51.6 bits (122), Expect = 4.700e-6
Identity = 24/58 (41.38%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:   25 DKYAYTTAIHASAQLGKWSRCVRYLEEMDANGVEKDVVTISAAISACA-----DKGQW 183
            D  ++T+ I A A+ G+W + +R+L EM A G+  + VTI + +SACA     DKG+W
Sbjct:  187 DVVSWTSMISALARCGQWDKVLRFLSEMQAEGINPNKVTIISVLSACAQTQAVDKGRW 244
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BLAST of mRNA_M-pyrifera_M_contig66628.16150.1 vs. uniprot
Match: A0A1W0VYN6_SORBI (Uncharacterized protein n=4 Tax=Andropogoneae TaxID=147429 RepID=A0A1W0VYN6_SORBI)

HSP 1 Score: 48.9 bits (115), Expect = 4.210e-5
Identity = 23/58 (39.66%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:   25 DKYAYTTAIHASAQLGKWSRCVRYLEEMDANGVEKDVVTISAAISACA-----DKGQW 183
            D  ++T+ I A AQ G W   +R+L EM A+G+  + VT+ + +SAC      DKG+W
Sbjct:  186 DVVSWTSMISAFAQCGMWDDALRFLAEMQADGISPNKVTVISLLSACGHTQTVDKGRW 243
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66628.16150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
J3L2B6_ORYBR4.700e-641.38Uncharacterized protein n=2 Tax=Oryza brachyantha ... [more]
A0A1W0VYN6_SORBI4.210e-539.66Uncharacterized protein n=4 Tax=Andropogoneae TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66628contigM-pyrifera_M_contig66628:193..375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816556.6864882-CDS-M-pyrifera_M_contig66628:192..3751622816556.6864882-CDS-M-pyrifera_M_contig66628:192..375Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66628 193..375 +
1692278044.974886-CDS-M-pyrifera_M_contig66628:192..3751692278044.974886-CDS-M-pyrifera_M_contig66628:192..375Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66628 193..375 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66628.16150.1prot_M-pyrifera_M_contig66628.16150.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66628 193..375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66628.16150.1

>prot_M-pyrifera_M_contig66628.16150.1 ID=prot_M-pyrifera_M_contig66628.16150.1|Name=mRNA_M-pyrifera_M_contig66628.16150.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=61bp
MQEDDVWVDKYAYTTAIHASAQLGKWSRCVRYLEEMDANGVEKDVVTISA
AISACADKGQW
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mRNA from alignment at M-pyrifera_M_contig66628:193..375+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66628.16150.1 ID=mRNA_M-pyrifera_M_contig66628.16150.1|Name=mRNA_M-pyrifera_M_contig66628.16150.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=183bp|location=Sequence derived from alignment at M-pyrifera_M_contig66628:193..375+ (Macrocystis pyrifera P11B4 male)
ATGCAAGAAGACGATGTGTGGGTGGACAAGTACGCCTACACGACTGCCAT
TCATGCCTCGGCGCAGCTGGGCAAGTGGTCTCGGTGCGTCAGGTACCTGG
AGGAGATGGACGCCAACGGGGTCGAGAAGGACGTGGTGACCATCAGCGCC
GCCATCAGCGCCTGCGCGGACAAGGGACAGTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66628:193..375+

>mRNA_M-pyrifera_M_contig66628.16150.1 ID=mRNA_M-pyrifera_M_contig66628.16150.1|Name=mRNA_M-pyrifera_M_contig66628.16150.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig66628:193..375+ (Macrocystis pyrifera P11B4 male)
ATGCAAGAAGACGATGTGTGGGTGGACAAGTACGCCTACACGACTGCCAT
TCATGCCTCGGCGCAGCTGGGCAAGTGGTCTCGGTGCGTCAGGTACCTGG
AGGAGATGGACGCCAACGGGGTCGAGAAGGACGTGGTGACCATCAGCGCC
GCCATCAGCGCCTGCGCGGACAAGGGACAGTGGATGCAAGAAGACGATGT
GTGGGTGGACAAGTACGCCTACACGACTGCCATTCATGCCTCGGCGCAGC
TGGGCAAGTGGTCTCGGTGCGTCAGGTACCTGGAGGAGATGGACGCCAAC
GGGGTCGAGAAGGACGTGGTGACCATCAGCGCCGCCATCAGCGCCTGCGC
GGACAAGGGACAGTGG
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